Comparative genome analysis of two peanut Ralstonia solanacearum strains with significant difference in pathogenicity reveals 16S rRNA dimethyltransferase RsmA involved in inducing immunity

Authors: Xiaodan Tan, Huiquan Tang, Dong Yang, Jinling Huang, Yushuang Wu, Junyi Yu, Jiajun Chen, Qiang Wang, Ruixue Yang, Xiaorong Wan, Yong Yang

Source: Chemical and Biological Technologies in Agriculture, Vol 11, Iss 1, Pp 1-17 (2024)

Subject Terms: Peanut, Ralstonia solanacearum, Bacterial wilt, RsmA, Immunity, Agriculture

File Description: electronic resource

Relation: https://doaj.org/toc/2196-5641

Access URL: https://doaj.org/article/18a783433b304159a62b20923b401be3

Construction and Pathogenicity Analysis of a GFPuv-labeled Peanut Ralstonia solanacearum Strain

Authors: Jinling HUANG, Yushuang WU, Huiquan TANG, Minyi HUANG, Ruixue YANG, Qiang WANG, Yong YANG, Xiaodan TAN

Source: Guangdong nongye kexue, Vol 51, Iss 11, Pp 102-112 (2024)

Subject Terms: ralstonia solanacearum, green fluorescence protein, homologous recombination, labeled strain, integration site, pathogenicity analysis, Agriculture

File Description: electronic resource

Relation: http://gdnykx.cnjournals.org/gdnykx/ch/reader/view_abstract.aspx?file_no=202411010; https://doaj.org/toc/1004-874X

Access URL: https://doaj.org/article/b95ed7aa0c4d44dda6be792012bcfe2f

Genome-wide analysis of the peanut CaM/CML gene family reveals that the AhCML69 gene is associated with resistance to Ralstonia solanacearum

Authors: Dong Yang, Ting Chen, Yushuang Wu, Huiquan Tang, Junyi Yu, Xiaoqiu Dai, Yixiong Zheng, Xiaorong Wan, Yong Yang, Xiaodan Tan

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-16 (2024)

Subject Terms: Arachis hypogaea, Calmodulin/calmodulin-like proteins, Ralstonia solanacearum, Genome-wide, Resistance, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/0c24ae82af264be19a402549d2a44e5b

Predictive value of monocyte to high-density lipoprotein cholesterol ratio and tumor markers in colorectal cancer and their relationship with clinicopathological characteristics

Authors: Xuan Zhang, Hongyan Qin, Xiaodan Tan, Yuncong Mo, Zhenyong Li, Guofeng Huang, Zhixiao Wei

Source: World Journal of Surgical Oncology, Vol 21, Iss 1, Pp 1-9 (2023)

Subject Terms: Monocytes to high-density lipoprotein cholesterol ratio, Colorectal cancer, Carcinoembryonic antigen, Carbohydrate antigen 199, Tumor markers, Surgery, RD1-811, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1477-7819

Access URL: https://doaj.org/article/284d8e95c5db43df8a1ba34e971773fe

LAPTM4B-YAP loop feedback amplification enhances the stemness of hepatocellular carcinoma

Authors: Jianping Liao, Jiahong Wang, Yu Xu, Yong Wu, Meifeng Wang, Qiudong Zhao, Xiaodan Tan, Yan Meng, Lixin Wei, Aimin Huang

Source: iScience, Vol 26, Iss 6, Pp 106754- (2023)

Subject Terms: Cell biology, Stem cells research, Cancer systems biology, Cancer, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004223008313; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/64916cafd73d4ea298aeb9c1bd2ed092

miR-204-5p is sponged by TUG1 to aggravate neuron damage induced by focal cerebral ischemia and reperfusion injury through upregulating COX2

Authors: Pu Xiang, Jian Hu, Hong Wang, Ying Luo, Chao Gu, Xiaodan Tan, Yujun Tu, Wenjia Guo, Lin Chen, Lin Gao, Rongchun Chen, Junqing Yang

Source: Cell Death Discovery, Vol 8, Iss 1, Pp 1-10 (2022)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/2058-7716

Access URL: https://doaj.org/article/d50e74b975eb4ee8a067dc1ba06bb5ab

Effects of fertilization on soil nematode communities in an alpine meadow of Qinghai-Tibet plateau

Authors: Yanwen Qi, Xinhang Sun, Sichen Peng, Xiaodan Tan, Shurong Zhou

Source: Frontiers in Ecology and Evolution, Vol 11 (2023)

Subject Terms: alpine meadow, soil nematode, fertilization, functional diversity, species diversity, root traits, Evolution, QH359-425, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fevo.2023.1122505/full; https://doaj.org/toc/2296-701X

Access URL: https://doaj.org/article/819b1a3403ae407fb05eb64cd8f2c076

Comparative genomic analysis of Ralstonia solanacearum reveals candidate avirulence effectors in HA4-1 triggering wild potato immunity

Authors: Mengshu Huang, Xiaodan Tan, Botao Song, Yuqi Wang, Dong Cheng, Bingsen Wang, Huilan Chen

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: Ralstonia solanacearum-potato interaction, bacterial resistance, avirulence effector, comparative genomics, type III effectors, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1075042/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/16e3068576de4394b526425aed3a7fe9

Genome-Wide Analysis of Pentatricopeptide Repeat Gene Family in Peanut and Identification of AhPPR598 Resistance to Ralstonia solanacearum

Authors: Yong Yang, Dong Yang, Yushuang Wu, Ting Chen, Xiaoqiu Dai, Junyi Yu, Huiquan Tang, Yixiong Zheng, Xiaorong Wan, Xiaodan Tan

Source: Agriculture, Vol 14, Iss 2, p 195 (2024)

Subject Terms: Arachis hypogaea, pentatricopeptide repeat (PPR) proteins, genome wide, expression pattern, bacterial wilt, AhPPR598, Agriculture (General), S1-972

File Description: electronic resource

Relation: https://www.mdpi.com/2077-0472/14/2/195; https://doaj.org/toc/2077-0472

Access URL: https://doaj.org/article/d1926c28200d4f9d85d717e12281c77c

Comparative transcriptome analysis revealed molecular mechanisms of peanut leaves responding to Ralstonia solanacearum and its type III secretion system mutant

Authors: Yong Yang, Ting Chen, Xiaoqiu Dai, Dong Yang, Yushuang Wu, Huilan Chen, Yixiong Zheng, Qingqing Zhi, Xiaorong Wan, Xiaodan Tan

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: peanut, Ralstonia solanacearum, DEGs, RNA sequencing, PAMPs, T3Es, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.998817/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/ffba43ed330f43868cd8a6eabb8d2bee

Discovery of Novel and Highly Potent Inhibitors of SARS CoV-2 Papain-Like Protease Through Structure-Based Pharmacophore Modeling, Virtual Screening, Molecular Docking, Molecular Dynamics Simulations, and Biological Evaluation

Authors: Xiaoyan Tian, Quanfeng Zhao, Xiaohong Chen, Zhe Peng, Xiaodan Tan, Qin Wang, Lin Chen, Yang Yang

Source: Frontiers in Pharmacology, Vol 13 (2022)

Subject Terms: SARS CoV-2, papain-like protease, pharmacophore modeling, molecular docking, inhibitor, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphar.2022.817715/full; https://doaj.org/toc/1663-9812

Access URL: https://doaj.org/article/41cd732908e542d18b2a30eed6a3f7a1

Complete Genome Sequence Analysis of Ralstonia solanacearum Strain PeaFJ1 Provides Insights Into Its Strong Virulence in Peanut Plants

Authors: Xiaodan Tan, Xiaoqiu Dai, Ting Chen, Yushuang Wu, Dong Yang, Yixiong Zheng, Huilan Chen, Xiaorong Wan, Yong Yang

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: Ralstonia solanacearum, peanut, genome sequencing, comparative genomic analysis, pathogenicity, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.830900/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/df99b19255e04252b4d80bf5d131d76a

CTRP1 Attenuates Cerebral Ischemia/Reperfusion Injury via the PERK Signaling Pathway

Authors: Huizhi Fei, Pu Xiang, Wen Luo, Xiaodan Tan, Chao Gu, Maozhu Liu, Mengyuan Chen, Qiong Wang, Junqing Yang

Source: Frontiers in Cell and Developmental Biology, Vol 9 (2021)

Subject Terms: CTRP1, apoptosis, endoplasmic reticulum stress, cerebral ischemia reperfusion injury, PERK signaling pathway, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2021.700854/full; https://doaj.org/toc/2296-634X

Access URL: https://doaj.org/article/21d1191d77c94315878b590b6df0b4dd

Effect of TO901317 on GF to promote the differentiation of human bone marrow mesenchymal stem cells into dopamine neurons on Parkinson’s disease

Authors: Miaomiao Li, Junqing Yang, Oumei Cheng, Zhe Peng, Yin Luo, Dongzhi Ran, Yang Yang, Pu Xiang, Haifeng Huang, Xiaodan Tan, Hong Wang

Source: Therapeutic Advances in Chronic Disease, Vol 12 (2021)

Subject Terms: Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://doaj.org/toc/2040-6231

Access URL: https://doaj.org/article/c063b6f074a645c6865aae7ca7d745c7

iPCD: A Comprehensive Data Resource of Regulatory Proteins in Programmed Cell Death

Authors: Dachao Tang, Cheng Han, Shaofeng Lin, Xiaodan Tan, Weizhi Zhang, Di Peng, Chenwei Wang, Yu Xue

Source: Cells, Vol 11, Iss 13, p 2018 (2022)

Subject Terms: programmed cell death, PCD protein, apoptosis, ferroptosis, GPX4, Cytology, QH573-671

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4409/11/13/2018; https://doaj.org/toc/2073-4409

Access URL: https://doaj.org/article/b1492c8b321a4327b427bee255c6de0e

Complete Genome Sequence of Sequevar 14M Ralstonia solanacearum Strain HA4-1 Reveals Novel Type III Effectors Acquired Through Horizontal Gene Transfer

Authors: Xiaodan Tan, Huishan Qiu, Feng Li, Dong Cheng, Xueao Zheng, Bingsen Wang, Mengshu Huang, Wenhao Li, Yanping Li, Kangqi Sang, Botao Song, Juan Du, Huilan Chen, Conghua Xie

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: Ralstonia solanacearum, genome sequencing, plasmid, type III effectors, potato, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.01893/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/435fa74466374747afca668dcdf0cca6

GPS-PBS: A Deep Learning Framework to Predict Phosphorylation Sites that Specifically Interact with Phosphoprotein-Binding Domains

Authors: Yaping Guo, Wanshan Ning, Peiran Jiang, Shaofeng Lin, Chenwei Wang, Xiaodan Tan, Lan Yao, Di Peng, Yu Xue

Source: Cells, Vol 9, Iss 5, p 1266 (2020)

Subject Terms: protein phosphorylation, phosphoprotein-binding domain, phosphorylation site, PPBD-specific binding p-site, deep learning, protein kinase, Cytology, QH573-671

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Relation: https://www.mdpi.com/2073-4409/9/5/1266; https://doaj.org/toc/2073-4409

Access URL: https://doaj.org/article/f363363bd4c543a3994c5861edd398a4

Improved Transient Response Estimations in Predicting 40 Hz Auditory Steady-State Response Using Deconvolution Methods

Authors: Xiaodan Tan, Qiuyang Fu, Han Yuan, Lei Ding, Tao Wang

Source: Frontiers in Neuroscience, Vol 11 (2017)

Subject Terms: auditory steady-state response, linear superposition hypothesis, multi-rate steady-state average deconvolution, continuous loop averaging deconvolution, stimulus sequencing scheme, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: http://journal.frontiersin.org/article/10.3389/fnins.2017.00697/full; https://doaj.org/toc/1662-453X

Access URL: https://doaj.org/article/1a35f245ef0441569ba2ecd420fae476

Study on Habituation of N100 Amplitude Attenuation Parameters at Different Loudness Scales

Authors: Wenting, Wu, Daming, Peng, Xiaodan, Tan

Source: Hang tian yi xue yu yi xue gong cheng. 31(5):502-506

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN618952044&indx=1&recIds=ETOCRN618952044

An Assessment of Linear Superposition Conditions for 40 Hz Auditory Steady-State Responses

Authors: Lin, Lin, Xiaodan, Tan, Tao, Wang

Source: Zhongguo sheng wu yi xue gong cheng xue bao. 35(3):278-283

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN607617204&indx=1&recIds=ETOCRN607617204