LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA

Authors: Xiao-Long Cui, Ji Nie, Houxiang Zhu, Krissana Kowitwanich, Alana V. Beadell, Diana C. West-Szymanski, Zhou Zhang, Urszula Dougherty, Akushika Kwesi, Zifeng Deng, Yan Li, Danqing Meng, Kevin Roggin, Teresa Barry, Ryan Owyang, Ben Fefferman, Chang Zeng, Lu Gao, Carolyn W. T. Zhao, Yuri Malina, Jiangbo Wei, Melanie Weigert, Wenjun Kang, Ajay Goel, Brian C.-H. Chiu, Marc Bissonnette, Wei Zhang, Mengjie Chen, Chuan He

Source: Genome Biology, Vol 25, Iss 1, Pp 1-18 (2024)

Subject Terms: Linear amplification, Bisulfite sequencing, Low-input DNA, Cell-free DNA, Cancer detection, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/5bb50822efdf457baaf29b14934cc113

Analysis of genome-wide 5-hydroxymethylation of blood samples stored in different anticoagulants: opportunities for the expansion of clinical resources for epigenetic research

Authors: Lu Gao, Zhou Zhang, Xiao-Long Cui, Diana West-Szymanski, Chang Ye, Chuan He, Wei Zhang, Marc Bissonnette

Source: Epigenetics, Vol 18, Iss 1 (2023)

Subject Terms: 5-hydroxymethylcytosine, 5hmC-Seal, cfDNA, EDTA, heparin, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1559-2294; https://doaj.org/toc/1559-2308

Access URL: https://doaj.org/article/0976d9c24d404580be02b96f64fabf41

METTL4-mediated nuclear N6-deoxyadenosine methylation promotes metastasis through activating multiple metastasis-inducing targets

Authors: Kai-Wen Hsu, Joseph Chieh-Yu Lai, Jeng-Shou Chang, Pei-Hua Peng, Ching-Hui Huang, Der-Yen Lee, Yu-Cheng Tsai, Chi-Jung Chung, Han Chang, Chao-Hsiang Chang, Ji-Lin Chen, See-Tong Pang, Ziyang Hao, Xiao-Long Cui, Chuan He, Kou-Juey Wu

Source: Genome Biology, Vol 23, Iss 1, Pp 1-37 (2022)

Subject Terms: METTL4, 6mA, Hypoxia, lncRNA, ZMIZ1, Metastasis, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/6c0fad365ca1454eb69e277ce3013571

A human tissue map of 5-hydroxymethylcytosines exhibits tissue specificity through gene and enhancer modulation

Authors: Xiao-Long Cui, Ji Nie, Jeremy Ku, Urszula Dougherty, Diana C. West-Szymanski, Francois Collin, Christopher K. Ellison, Laura Sieh, Yuhong Ning, Zifeng Deng, Carolyn W. T. Zhao, Anna Bergamaschi, Joel Pekow, Jiangbo Wei, Alana V. Beadell, Zhou Zhang, Geeta Sharma, Raman Talwar, Patrick Arensdorf, Jason Karpus, Ajay Goel, Marc Bissonnette, Wei Zhang, Samuel Levy, Chuan He

Source: Nature Communications, Vol 11, Iss 1, Pp 1-11 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/422a834f9ee54a78aa65900aafeb0d8b

Control of Early B Cell Development by the RNA N6-Methyladenosine Methylation

Authors: Zhong Zheng, Linda Zhang, Xiao-Long Cui, Xianbin Yu, Phillip J. Hsu, Ruitu Lyu, Haiyan Tan, Malay Mandal, Michelle Zhang, Hui-Lung Sun, Arantxa Sanchez Castillo, Junmin Peng, Marcus R. Clark, Chuan He, Haochu Huang

Source: Cell Reports, Vol 31, Iss 13, Pp 107819- (2020)

Subject Terms: B cell development, RNA m6A modification, METTL14, YTHDF2, Post-transcriptional regulation of gene expression, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124720308007; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/448c8fb537d140fc9dc83e37b8b0351f

Nine Novel Phages from a Plateau Lake in Southwest China: Insights into Aeromonas Phage Diversity

Authors: Meng Bai, Ya-Hui Cheng, Xue-Qin Sun, Zi-Yi Wang, Yong-Xia Wang, Xiao-Long Cui, Wei Xiao

Source: Viruses, Vol 11, Iss 7, p 615 (2019)

Subject Terms: bacteriophage, Aeromonas, genome evolution, large terminase, auxiliary metabolism gene, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/11/7/615; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/6ef01e32b7d54848955697d6faca612a

Development of a Virtual Maintenance System for Complex Mechanical Product

Authors: Xin-hua Liu, Guo-min Song, Xiao-long Cui, Bi-hong Xu, Kai Wang, Zhong-bin Wang

Source: Advances in Mechanical Engineering, Vol 5 (2013)

Subject Terms: Mechanical engineering and machinery, TJ1-1570

File Description: electronic resource

Relation: https://doaj.org/toc/1687-8132

Access URL: https://doaj.org/article/65c62c0d37a34310b80da38d44883ec1

Vapor-Liquid Equilibria for the Trifluoromethane + 1,1,1,2-Tetrafluoroethane System.

Authors: Xiao Long Cui, Guang Ming Chen, Xiao Hong Han

Source: Journal of Chemical & Engineering Data; September/October 2006, Vol. 51 Issue 5, p1927-1930, 4p

FTO mediates LINE1 m6A demethylation and chromatin regulation in mESCs and mouse development.

Authors: Jiangbo Wei^1,2, Xianbin Yu^1,2, Lei Yang^3,4, Xuelian Liu³, Boyang Gao^2,5, Boxian Huang⁶, Xiaoyang Dou^2,5, Jun Liu^2,5, Zhongyu Zou^2,5, Xiao-Long Cui^2,5, Li-Sheng Zhang^2,5, Xingsen Zhao^7,8, Qinzhe Liu^2,5, He, P. Cody^2,5, Sepich-Poore, Caraline^2,5, Zhong, Nicole^2,5, Wenqiang Liu⁹, Yanhe Li⁹, Xiaochen Kou³, Yanhong Zhao³

Source: Science; 5/27/2022, Vol. 376 Issue 6596, p968-973, 6p, 5 Color Photographs

FTO mediates LINE1 m⁶A demethylation and chromatin regulation in mESCs and mouse development.

Authors: Jiangbo Wei, Xianbin Yu, Lei Yang, Xuelian Liu, Boyang Gao, Boxian Huang, Xiaoyang Dou, Jun Liu, Zhongyu Zou, Xiao-Long Cui, Li-Sheng Zhang, Xingsen Zhao, Qinzhe Liu, He, P. Cody, Sepich-Poore, Caraline, Zhong, Nicole, Wenqiang Liu, Yanhe Li, Xiaochen Kou, Yanhong Zhao

Source: Science; 5/27/2022, Vol. 376 Issue 6596, p968-973, 6p, 5 Color Photographs

Zhihengliuella salsuginis sp. nov., a moderately halophilic actinobacterium from a subterranean brine.

Authors: Yi-Guang Chen, Shu-Kun Tang, Yu-Qin Zhang, Zhu-Xiang Liu, Qi-Hui Chen, Jian-Wu He, Xiao-Long Cui, Wen-Jun Li

Source: Extremophiles; Jul2010, Vol. 14 Issue 4, p397-402, 6p, 1 Diagram, 1 Chart

Subject Terms: HALOPHILIC microorganisms, ACTINOBACTERIA, SALT, STREAM salinity

Geographic Terms: HUNAN Sheng (China), CHINA

Halobacillus hunanensis sp. nov., a moderately halophilic bacterium isolated from a subterranean brine.

Authors: Qing-Zhong Peng, Qing-Jing Peng, Yu-Qin Zhang, Zhu-Xiang Liu, Yong-Xia Wang, Xiao-Long Cui, Yi-Guang Chen

Source: Antonie van Leeuwenhoek; Nov2009, Vol. 96 Issue 4, p497-504, 8p

Virgibacillus litoralis sp. nov., a moderately halophilic bacterium isolated from saline soil.

Authors: Yi-Guang Chen, Zhu-Xiang Liu, De-Jiao Peng, Yu-Qin Zhang, Yong-Xia Wang, Shu-Kun Tang, Xiao-Long Cui, Yan-Qi Liu

Source: Antonie van Leeuwenhoek; Oct2009, Vol. 96 Issue 3, p323-329, 7p

Halobacillus naozhouensis sp. nov., a moderately halophilic bacterium isolated from a sea anemone.

Authors: Zhi-Xiong Liu, Yu-Qin Zhang, You-Xiang Zhang, Shu-Kun Tang, Entomack Borrathybay, Xiao-Long Cui

Source: Antonie van Leeuwenhoek; Jun2009, Vol. 96 Issue 1, p99-107, 9p

Halomonas sediminis sp. nov., a new halophilic bacterium isolated from salt-lake sediment in China.

Authors: Heng-Yu Huang, Yi-Guang Chen, Yong-Xia Wang, Ji-Hui Liu, Shu-Kun Tang, Qian Peng, Meng-Liang Wen, Hong Yu, Xiao-Long Cui

Source: Extremophiles; Dec2008, Vol. 12 Issue 6, p829-835, 7p, 1 Diagram, 2 Charts

Subject Terms: LAKE sediments, FATTY acids, BACTERIA, SALT lakes

Geographic Terms: TSAIDAM Basin (China), CHINA

Salinicoccus salitudinis sp. nov., a new moderately halophilic bacterium isolated from a saline soil sample.

Authors: Yi-Guang Chen¹, Xiao-Long Cui² xlcuiynu@yahoo.com.cn, Wen-Jun Li², Li-Hua Xu², Meng-Liang Wen², Qian Peng², Cheng-Lin Jiang²

Source: Extremophiles. Feb2008, Vol. 12 Issue 2, p197-203. 7p. 1 Diagram, 2 Charts.

Subject Terms: *SOIL salinity, *SALINITY, *SOIL composition, *CATALYSTS, *FATTY acids, *PHYLOGENY, *GENES

Geographic Terms: TSAIDAM Basin (China), CHINA

Co-participation of paternal and maternal genomes before the blastocyst stage is not required for full-term development of mouse embryos.

Authors: Xin Li, Jia-Qiang Wang, Le-Yun Wang, Hai-Feng Wan, Yu-Fei Li, Tian-Da Li, Yu-Kai Wang, Ling Shuai, Yi-Huan Mao, Xiao-Long Cui, Liu Wang, Zhong-Hua Liu, Wei Li, Qi Zhou

Source: Journal of Molecular Cell Biology; Oct2015, Vol. 7 Issue 5, p486-488, 3p

Cytotoxic metabolites of Streptimonospora salina.

Authors: Wei-Hong Liu, Ming-Gang Li, Yi-Qing Li, Jiang-Yuan Zhao, Zhang-Gui Ding, Pei-Wen Yang, Xiao-Long Cui, Meng-Liang Wen

Source: Chemistry of Natural Compounds; Jul2008, Vol. 44 Issue 4, p503-505, 3p, 1 Diagram

Subject Terms: METABOLITES, ANTIBIOTICS, PHENAZINE, CARBOXYLIC acids, NUCLEAR magnetic resonance

The METTL5-TRMT112 N⁶-methyladenosine methyltransferase complex regulates mRNA translation via 18S rRNA methylation.

Authors: Sepich-Poore, Caraline¹, Zhong Zheng^1,2, Schmitt, Emily^1,2, Kailong Wen¹, Zhang, Zijie Scott^1,2, Xiao-Long Cui^1,2, Qing Dai¹, Zhu, Allen C.¹, Linda Zhang^1,2, Castillo, Arantxa Sanchez^1,2, Haiyan Tan^1,2, Junmin Peng^1,2, Xiaoxi Zhuang³, Chuan He^1,2 chuanhe@uchicago.edu, Nachtergaele, Sigrid^1,2

Source: Journal of Biological Chemistry. Mar2022, Vol. 298 Issue 3, p1-20. 20p.

Subject Terms: *RIBOSOMAL RNA, *METHYLTRANSFERASES, *NON-coding RNA, *KNOCKOUT mice, *METHYLATION, *MESSENGER RNA, *RIBOSOMES