Distributed Model Exploration with EMEWS

Authors: Collier, Nicholson, Wozniak, Justin M., Fadikar, Arindam, Stevens, Abby, Ozik, Jonathan

Source: 2024 Winter Simulation Conference (WSC) Winter Simulation Conference (WSC), 2024. :72-86 Dec, 2024

Relation: 2024 Winter Simulation Conference (WSC)

Benchmarking community drug response prediction models: datasets, models, tools, and metrics for cross-dataset generalization analysis

Authors: Partin, Alexander, Vasanthakumari, Priyanka, Narykov, Oleksandr, Wilke, Andreas, Koussa, Natasha, Jones, Sara E., Zhu, Yitan, Overbeek, Jamie C., Jain, Rajeev, Fernando, Gayara Demini, Sanchez-Villalobos, Cesar, Garcia-Cardona, Cristina, Mohd-Yusof, Jamaludin, Chia, Nicholas, Wozniak, Justin M., Ghosh, Souparno, Pal, Ranadip, Brettin, Thomas S., Weil, M. Ryan, Stevens, Rick L.

Subject Terms: Computer Science - Machine Learning, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2503.14356

Diaspora: Resilience-Enabling Services for Real-Time Distributed Workflows

Authors: Nicolae, Bogdan, Wozniak, Justin M., Bicer, Tekin, Nguyen, Hai, Patel, Parth, Pan, Haochen, Gueroudji, Amal, Gonthier, Maxime, Hayot-Sasson, Valerie, Huerta, Eliu, Chard, Kyle, Chard, Ryan, Dorier, Matthieu, Rao, Nageswara S. V., Al-Najjar, Anees, Corsi, Alessandra, Foster, Ian

Source: 2024 IEEE 20th International Conference on e-Science (e-Science) e-Science (e-Science), 2024 IEEE 20th International Conference on. :1-9 Sep, 2024

Relation: 2024 IEEE 20th International Conference on e-Science (e-Science)

Exascale Workflow Applications and Middleware: An ExaWorks Retrospective

Authors: Alsaadi, Aymen, Hategan-Marandiuc, Mihael, Maheshwari, Ketan, Merzky, Andre, Titov, Mikhail, Turilli, Matteo, Wilke, Andreas, Wozniak, Justin M., Chard, Kyle, da Silva, Rafael Ferreira, Jha, Shantenu, Laney, Daniel

Subject Terms: Computer Science - Software Engineering

Access URL: http://arxiv.org/abs/2411.10637

ExaWorks Software Development Kit: A Robust and Scalable Collection of Interoperable Workflow Technologies

Authors: Turilli, Matteo, Hategan-Marandiuc, Mihael, Titov, Mikhail, Maheshwari, Ketan, Alsaadi, Aymen, Merzky, Andre, Arambula, Ramon, Zakharchanka, Mikhail, Cowan, Matt, Wozniak, Justin M., Wilke, Andreas, Kilic, Ozgur Ozan, Chard, Kyle, da Silva, Rafael Ferreira, Jha, Shantenu, Laney, Daniel

Subject Terms: Computer Science - Software Engineering, Computer Science - Distributed, Parallel, and Cluster Computing

Access URL: http://arxiv.org/abs/2407.16646

An Automation Framework for Comparison of Cancer Response Models Across Configurations

Authors: Wozniak, Justin M., Jain, Rajeev, Wilke, Andreas, Weaver, Rylie, Partin, Alexander, Brettin, Thomas, Stevens, Rick

Source: 2023 IEEE 19th International Conference on e-Science (e-Science) e-Science (e-Science), 2023 IEEE 19th International Conference on. :1-10 Oct, 2023

Relation: 2023 IEEE 19th International Conference on e-Science (e-Science)

PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs

Authors: Hategan-Marandiuc, Mihael, Merzky, Andre, Collier, Nicholson, Maheshwari, Ketan, Ozik, Jonathan, Turilli, Matteo, Wilke, Andreas, Wozniak, Justin M., Chard, Kyle, Foster, Ian, da Silva, Rafael Ferreira, Jha, Shantenu, Laney, Daniel

Source: 2023 IEEE 19th International Conference on e-Science (e-Science) e-Science (e-Science), 2023 IEEE 19th International Conference on. :1-10 Oct, 2023

Relation: 2023 IEEE 19th International Conference on e-Science (e-Science)

Steering a Fleet: Adaptation for Large-Scale, Workflow-Based Experiments

Authors: Pruyne, Jim, Hayot-Sasson, Valerie, Zheng, Weijian, Chard, Ryan, Wozniak, Justin M., Bicer, Tekin, Chard, Kyle, Foster, Ian T.

Subject Terms: Computer Science - Distributed, Parallel, and Cluster Computing

Access URL: http://arxiv.org/abs/2403.06077

Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis

Authors: Collier, Nicholson, Wozniak, Justin M., Stevens, Abby, Babuji, Yadu, Binois, Mickael, Fadikar, Arindam, Wurth, Alexandra, Chard, Kyle, Ozik, Jonathan

Source: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) IPDPSW Parallel and Distributed Processing Symposium Workshops (IPDPSW), 2023 IEEE International. :868-877 May, 2023

Relation: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)

WfBench: Automated Generation of Scientific Workflow Benchmarks

Authors: Coleman, Taina, Casanova, Henri, Maheshwari, Ketan, Pottier, Loic, Wilkinson, Sean R., Wozniak, Justin, Suter, Frederic, Shankar, Mallikarjun, Da Silva, Rafael Ferreira

Source: 2022 IEEE/ACM International Workshop on Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS) PMBS Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS), 2022 IEEE/ACM International Workshop on. :100-111 Nov, 2022

Relation: 2022 IEEE/ACM International Workshop on Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS)

Tracking Dubious Data: Protecting Scientific Workflows from Invalidated Experiments

Authors: Pruyne, Jim, Wozniak, Justin M., Foster, Ian

Source: 2022 IEEE 18th International Conference on e-Science (e-Science) ESCIENCE e-Science (e-Science), 2022 IEEE 18th International Conference on. :456-461 Oct, 2022

Relation: 2022 IEEE 18th International Conference on e-Science (e-Science)

NSF RESUME HPC Workshop: High-Performance Computing and Large-Scale Data Management in Service of Epidemiological Modeling

Authors: Stevens, Abby, Ozik, Jonathan, Chard, Kyle, Gerardin, Jaline, Wozniak, Justin M.

Subject Terms: Computer Science - Computers and Society

Access URL: http://arxiv.org/abs/2308.04602

Bootstrapping In-Situ Workflow Auto-Tuning via Combining Performance Models of Component Applications

Authors: Shu, Tong, Guo, Yanfei, Wozniak, Justin, Ding, Xiaoning, Foster, Ian, Kurc, Tahsin

Source: SC21: International Conference for High Performance Computing, Networking, Storage and Analysis High Performance Computing, Networking, Storage and Analysis, SC21: International Conference for. :1-15 Nov, 2021

Relation: SC21: International Conference for High Performance Computing, Networking, Storage and Analysis

ExaWorks: Workflows for Exascale

Authors: Al-Saadi, Aymen, Ahn, Dong H., Babuji, Yadu, Chard, Kyle, Corbett, James, Hategan, Mihael, Herbein, Stephen, Jha, Shantenu, Laney, Daniel, Merzky, Andre, Munson, Todd, Salim, Michael, Titov, Mikhail, Turilli, Matteo, Uram, Thomas D., Wozniak, Justin M.

Source: 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS) WORKS Workflows in Support of Large-Scale Science (WORKS), 2021 IEEE Workshop on. :50-57 Nov, 2021

Relation: 2021 IEEE Workshop on Workflows in Support of Large-Scale Science (WORKS)

High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response

Authors: Wozniak, Justin M., Yoo, Hyunseung, Mohd-Yusof, Jamaludin, Nicolae, Bogdan, Collier, Nicholson, Ozik, Jonathan, Brettin, Thomas, Stevens, Rick

Source: 2020 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC) and Workshop on Artificial Intelligence and Machine Learning for Scientific Applications (AI4S) MLHPC-AI4S Machine Learning in High Performance Computing Environments (MLHPC) and Workshop on Artificial Intelligence and Machine Learning for Scientific Applications (AI4S), 2020 IEEE/ACM Workshop on. :1-10 Nov, 2020

Relation: 2020 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC) and Workshop on Artificial Intelligence and Machine Learning for Scientific Applications (AI4S)

DeepClone: Lightweight State Replication of Deep Learning Models for Data Parallel Training

Authors: Nicolae, Bogdan, Wozniak, Justin M., Dorier, Matthieu, Cappello, Franck

Source: 2020 IEEE International Conference on Cluster Computing (CLUSTER) CLUSTER Cluster Computing (CLUSTER), 2020 IEEE International Conference on. :226-236 Sep, 2020

Relation: 2020 IEEE International Conference on Cluster Computing (CLUSTER)

DeepFreeze: Towards Scalable Asynchronous Checkpointing of Deep Learning Models

Authors: Nicolae, Bogdan, Li, Jiali, Wozniak, Justin M., Bosilca, George, Dorier, Matthieu, Cappello, Franck

Source: 2020 20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing (CCGRID) Cluster, Cloud and Internet Computing (CCGRID), 2020 20th IEEE/ACM International Symposium on. :172-181 May, 2020

Relation: 2020 20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing (CCGRID)

Understanding Scalability and Fine-Grain Parallelism of Synchronous Data Parallel Training

Authors: Li, Jiali, Nicolae, Bogdan, Wozniak, Justin, Bosilca, George

Source: 2019 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC) MLHPC Machine Learning in High Performance Computing Environments (MLHPC), 2019 IEEE/ACM Workshop on. :1-8 Nov, 2019

Relation: 2019 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC)

Toward Interlanguage Parallel Scripting for Distributed-Memory Scientific Computing

Authors: Wozniak, Justin M., Armstrong, Timothy G., Maheshwari, Ketan C., Katz, Daniel S., Wilde, Michael, Foster, Ian T.

Subject Terms: Computer Science - Distributed, Parallel, and Cluster Computing

Access URL: http://arxiv.org/abs/2107.02841

Workflows Community Summit: Advancing the State-of-the-art of Scientific Workflows Management Systems Research and Development

Authors: da Silva, Rafael Ferreira, Casanova, Henri, Chard, Kyle, Coleman, Tainã, Laney, Dan, Ahn, Dong, Jha, Shantenu, Howell, Dorran, Soiland-Reys, Stian, Altintas, Ilkay, Thain, Douglas, Filgueira, Rosa, Babuji, Yadu, Badia, Rosa M., Balis, Bartosz, Caino-Lores, Silvina, Callaghan, Scott, Coppens, Frederik, Crusoe, Michael R., De, Kaushik, Di Natale, Frank, Do, Tu M. A., Enders, Bjoern, Fahringer, Thomas, Fouilloux, Anne, Fursin, Grigori, Gaignard, Alban, Ganose, Alex, Garijo, Daniel, Gesing, Sandra, Goble, Carole, Hasan, Adil, Huber, Sebastiaan, Katz, Daniel S., Leser, Ulf, Lowe, Douglas, Ludaescher, Bertram, Maheshwari, Ketan, Malawski, Maciej, Mayani, Rajiv, Mehta, Kshitij, Merzky, Andre, Munson, Todd, Ozik, Jonathan, Pottier, Loïc, Ristov, Sashko, Roozmeh, Mehdi, Souza, Renan, Suter, Frédéric, Tovar, Benjamin, Turilli, Matteo, Vahi, Karan, Vidal-Torreira, Alvaro, Whitcup, Wendy, Wilde, Michael, Williams, Alan, Wolf, Matthew, Wozniak, Justin

Subject Terms: Computer Science - Distributed, Parallel, and Cluster Computing

Access URL: http://arxiv.org/abs/2106.05177