Genome-wide association identifies a missing hydrolase for tocopherol synthesis in plants

Authors: Albert, Elise, Kim, Sungsoo, Magallanes-Lundback, Maria, Bao, Yan, Deason, Nicholas, Danilo, Benoit, Wu, Di, Li, Xiaowei, Wood, Joshua C., Bornowski, Nolan, Gore, Michael A., Buell, C. Robin, DellaPenna, Dean

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Jun 01. 119(23), 1-10.

Access URL: https://www.jstor.org/stable/27152092

The biosynthesis of thymol, carvacrol, and thymohydroquinone in Lamiaceae proceeds via cytochrome P450s and a short-chain dehydrogenase

Authors: Krause, Sandra T., Liao, Pan, Crocoll, Christoph, Boachon, Benoit, Förster, Christiane, Leidecker, Franziska, Wiese, Natalie, Zhao, Dongyan, Wood, Joshua C., Buell, C. Robin, Gershenzon, Jonathan, Dudareva, Natalia, Degenhardt, Jörg

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Dec . 118(52), 1-10.

Access URL: https://www.jstor.org/stable/27112791

Cell‐type‐aware regulatory landscapes governing monoterpene indole alkaloid biosynthesis in the medicinal plant Catharanthus roseus.

Authors: Li, Chenxin, Colinas, Maite, Wood, Joshua C., Vaillancourt, Brieanne, Hamilton, John P., Jones, Sophia L., Caputi, Lorenzo, O'Connor, Sarah E., Buell, C. Robin

Source: New Phytologist; Jan2025, Vol. 245 Issue 1, p347-362, 16p

Subject Terms: TRANSCRIPTION factors, INDOLE alkaloids, GENE expression, CATHARANTHUS roseus, BIOSYNTHESIS

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity

Authors: Hoopes, Genevieve, Meng, Xiaoxi, Hamilton, John P., Achakkagari, Sai Reddy, de Alves Freitas Guesdes, Fernanda, Bolger, Marie E., Coombs, Joseph J., Esselink, Danny, Kaiser, Natalie R., Kodde, Linda, Kyriakidou, Maria, Lavrijssen, Brian, van Lieshout, Natascha, Shereda, Rachel, Tuttle, Heather K., Vaillancourt, Brieanne, Wood, Joshua C., de Boer, Jan M., Bornowski, Nolan, Bourke, Peter, Douches, David, van Eck, Herman J., Ellis, Dave, Feldman, Max J., Gardner, Kyle M., Hopman, Johannes C.P., Jiang, Jiming, De Jong, Walter S., Kuhl, Joseph C., Novy, Richard G., Oome, Stan, Sathuvalli, Vidyasagar, Tan, Ek Han, Ursum, Remco A., Vales, M. Isabel, Vining, Kelly, Visser, Richard G.F., Vossen, Jack, Yencho, G. Craig, Anglin, Noelle L., Bachem, Christian W.B., Endelman, Jeffrey B., Shannon, Laura M., Strömvik, Martina V., Tai, Helen H., Usadel, Björn, Buell, C. Robin, Finkers, Richard

Source: In Molecular Plant 7 March 2022 15(3):520-536

Identification of genes associated with abiotic stress tolerance in sweetpotato using weighted gene co‐expression network analysis

Authors: Kitavi, Mercy, Gemenet, Dorcus C., Wood, Joshua C., Hamilton, John P., Wu, Shan, Fei, Zhangjun, Khan, Awais, Buell, C. Robin

Source: Plant direct. 7(10)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100196395573.0x000001&indx=1&recIds=ETOCvdc_100196395573.0x000001

Chromosome‐scale Salvia hispanica L. (Chia) genome assembly reveals rampant Salvia interspecies introgression.

Authors: Brose, Julia, Hamilton, John P., Schlecht, Nicholas, Zhao, Dongyan, Mejía‐Ponce, Paulina M., Cruz‐Pérez, Arely, Vaillancourt, Brieanne, Wood, Joshua C., Edger, Patrick P., Montes‐Hernandez, Salvador, de Rosas, Guillermo Orozco, Hamberger, Björn, Cibrian‐Jaramillo, Angélica, Buell, C. Robin

Source: Plant Genome; Sep2024, Vol. 17 Issue 3, p1-16, 16p

Quantitative Single-Cell Mass Spectrometry Provides a Highly Resolved Analysis of Natural Product Biosynthesis Partitioning in Plants.

Authors: Vu, Anh Hai, Kang, Moonyoung, Wurlitzer, Jens, Heinicke, Sarah, Li, Chenxin, Wood, Joshua C., Grabe, Veit, Buell, C. Robin, Caputi, Lorenzo, O'Connor, Sarah E.

Source: Journal of the American Chemical Society; 8/28/2024, Vol. 146 Issue 34, p23891-23900, 10p

Combining GWAS and TWAS to identify candidate causal genes for tocochromanol levels in maize grain.

Authors: Di Wu¹, Xiaowei Li¹, Ryokei Tanaka¹, Wood, Joshua C.², Tibbs-Cortes, Laura E.³, Magallanes-Lundback, Maria⁴, Bornowski, Nolan⁵, Hamilton, John P.², Vaillancourt, Brieanne², Diepenbrock, Christine H.⁶, Xianran Li⁷, Deason, Nicholas T.⁴, Schoenbaum, Gregory R.³, Jianming Yu³, Buell, C. Robin², DellaPenna, Dean⁴, Gore, Michael A.¹, mag87@cornell.edu

Source: Genetics; Aug2022, Vol. 221 Issue 4, p1-14, 14p

An updated gene atlas for maize reveals organ‐specific and stress‐induced genes

Authors: Hoopes, Genevieve M., Hamilton, John P., Wood, Joshua C., Esteban, Eddi, Pasha, Asher, Vaillancourt, Brieanne, Provart, Nicholas J., Buell, C. Robin

Source: Plant journal. 97(6):1154-1167

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100082966216.0x000001&indx=1&recIds=ETOCvdc_100082966216.0x000001

Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.]

Authors: Gemenet, Dorcus C., da Silva Pereira, Guilherme, De Boeck, Bert, Wood, Joshua C., Mollinari, Marcelo, Olukolu, Bode A., Diaz, Federico, Mosquera, Veronica, Ssali, Reuben T., David, Maria, Kitavi, Mercy N., Burgos, Gabriela, Felde, Thomas Zum, Ghislain, Marc, Carey, Edward, Swanckaert, Jolien, Coin, Lachlan J. M., Fei, Zhangjun, Hamilton, John P., Yada, Benard, Yencho, G. Craig, Zeng, Zhao-Bang, Mwanga, Robert O. M., Khan, Awais, Gruneberg, Wolfgang J., Buell, C. Robin

Source: Theoretical and applied genetics. 133(1):23-36

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125287666.0x000001&indx=1&recIds=ETOCvdc_100125287666.0x000001

Transcriptome‐wide association and prediction for carotenoids and tocochromanols in fresh sweet corn kernels

Authors: Hershberger, Jenna, Tanaka, Ryokei, Wood, Joshua C., Kaczmar, Nicholas, Wu, Di, Hamilton, John P., DellaPenna, Dean, Buell, C. Robin, Gore, Michael A.

Source: œplant genome. 15(2)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100154057012.0x000001&indx=1&recIds=ETOCvdc_100154057012.0x000001

Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato

Authors: Hardigan, Michael A., Laimbeer, F. Parker E., Newton, Linsey, Crisovan, Emily, Hamilton, John P., Vaillancourt, Brieanne, Wiegert-Rininger, Krystle, Wood, Joshua C., Douches, David S., Farré, Eva M., Veilleux, Richard E., Buell, C. Robin

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 Nov . 114(46), E9999-E10008.

Access URL: https://www.jstor.org/stable/26486606

Impact of choice of future climate change projection on growth chamber experimental outcomes: a preliminary study in potato

Authors: Leisner, Courtney P., Wood, Joshua C., Vaillancourt, Brieanne, Tang, Ying, Douches, Dave S., Robin Buell, C., Winkler, Julie A.

Source: International journal of biometeorology. 62(4):669-679

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125309348.0x000001&indx=1&recIds=ETOCvdc_100125309348.0x000001

Multiple QTL Mapping in Autopolyploids: A Random-Effect Model Approach with Application in a Hexaploid Sweetpotato Full-Sib Population.

Authors: da Silva Pereira, Guilherme^1,2, gdasilv@ncsu.edu, Gemenet, Dorcus C.³, Mollinari, Marcelo^1,2, Olukolu, Bode A.⁴, Wood, Joshua C.⁵, Diaz, Federico⁶, Mosquera, Veronica⁶, Gruneberg, Wolfgang J.⁶, Khan, Awais⁷, Buell, C. Robin⁵, Yencho, G. Craig², Zhao-Bang Zeng^1,2

Source: Genetics; Jul2020, Vol. 215 Issue 3, p579-595, 17p

Chromosome-scale genome assembly of the 'Munstead' cultivar of Lavandula angustifolia.

Authors: Hamilton, John P., Vaillancourt, Brieanne, Wood, Joshua C., Wang, Haiyan, Jiang, Jiming, Soltis, Douglas E., Buell, C. Robin, Soltis, Pamela S.

Source: BMC Genomic Data; 12/13/2023, Vol. 24 Issue 1, p1-6, 6p

Subject Terms: LAVENDERS, GENOMES, CULTIVARS, CHROMOSOMES, LAMIACEAE, SPECIES

Leveraging prior biological knowledge improves prediction of tocochromanols in maize grain.

Authors: Tanaka, Ryokei, Wu, Di, Li, Xiaowei, Tibbs‐Cortes, Laura E., Wood, Joshua C., Magallanes‐Lundback, Maria, Bornowski, Nolan, Hamilton, John P., Vaillancourt, Brieanne, Li, Xianran, Deason, Nicholas T., Schoenbaum, Gregory R., Buell, C. Robin, DellaPenna, Dean, Yu, Jianming, Gore, Michael A.

Source: Plant Genome; Dec2023, Vol. 16 Issue 4, p1-17, 17p

Cold stress induces differential gene expression of retained homeologs in Camelina sativa cv Suneson.

Authors: Chao Fang, Hamilton, John P., Vaillancourt, Brieanne, Yi-Wen Wang, Wood, Joshua C., Deans, Natalie C., Scroggs, Taylor, Carlton, Lemor, Mailloux, Kathrine, Douches, David S., Nadakuduti, Satya Swathi, Jiming Jiang, Buell, C. Robin

Source: Frontiers in Plant Science; 2023, p01-13, 13p

Subject Terms: GENE expression, DEVIATORIC stress (Engineering), CAMELINA, PHYSIOLOGICAL effects of cold temperatures, COMPARATIVE genomics, ABIOTIC stress, GENE ontology

Chromosome-scale assembly of the Verbenaceae species Queen's Wreath (Petrea volubilis L.).

Authors: Hamilton, John P., Vaillancourt, Brieanne, Wood, Joshua C., Buell, C. Robin

Source: BMC Genomic Data; 3/3/2023, Vol. 24 Issue 1, p1-5, 5p

Subject Terms: VERBENACEAE, SPECIES, PLANT species, CHROMOSOMES

Single-cell multi-omics in the medicinal plant Catharanthus roseus

Authors: Li, Chenxin, Wood, Joshua C., Vu, Anh Hai, Hamilton, John P., Rodriguez Lopez, Carlos Eduardo, Payne, Richard M. E., Serna Guerrero, Delia Ayled, Gase, Klaus, Yamamoto, Kotaro, Vaillancourt, Brieanne, Caputi, Lorenzo, O’Connor, Sarah E., Robin Buell, C.

Source: Nature Chemical Biology; 20230101, Issue: Preprints p1-11, 11p

Biocatalytic routes to stereo-divergent iridoids.

Authors: Hernández Lozada, Néstor J., Hong, Benke, Wood, Joshua C., Caputi, Lorenzo, Basquin, Jérôme, Chuang, Ling, Kunert, Maritta, Rodríguez López, Carlos E., Langley, Chloe, Zhao, Dongyan, Buell, C. Robin, Lichman, Benjamin R., O'Connor, Sarah E.

Source: Nature Communications; 8/11/2022, Vol. 13 Issue 1, p1-13, 13p

Subject Terms: IRIDOIDS, BIOCATALYSIS, NATURAL products, INSECT baits & repellents, BIOSYNTHESIS, STEREOISOMERS, REDUCTASES