Oral-gut microbiome interactions in advanced cirrhosis: characterisation of pathogenic enterotypes and salivatypes, virulence factors and antimicrobial resistance

Authors: Lee, Sunjae ^{1, 2, †}, Arefaine, Bethlehem ^{3, †}, Begum, Neelu ¹, Stamouli, Marilena ³, Witherden, Elizabeth ¹, Mohamad, Merianne ³, Harzandi, Azadeh ¹, Zamalloa, Ane ⁴, Cai, Haizhuang ¹, Williams, Roger ^{3, #}, Curtis, Michael A. ^{1, 5}, Edwards, Lindsey A. ¹, Chokshi, Shilpa ³, Mardinoglu, Adil ^{1, 6}, Proctor, Gordon ^{1, 5}, Moyes, David L. ¹, McPhail, Mark J. ^{3, 4}, Shawcross, Debbie L. ^{3, 4}, Uhlen, Mathias ⁶, Shoaie, Saeed ^{1, 6, ⁎, ‡}, Patel, Vishal C. ^{3, 4, ⁎, ‡}

Source: In Journal of Hepatology April 2025 82(4):622-633

Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial

Authors: Patel, Vishal C., Lee, Sunjae, McPhail, Mark J.W., Da Silva, Kevin, Guilly, Susie, Zamalloa, Ane, Witherden, Elizabeth, Støy, Sidsel, Manakkat Vijay, Godhev Kumar, Pons, Nicolas, Galleron, Nathalie, Huang, Xaiohong, Gencer, Selin, Coen, Muireann, Tranah, Thomas Henry, Wendon, Julia Alexis, Bruce, Kenneth D., Le Chatelier, Emmanuelle, Ehrlich, Stanislav Dusko, Edwards, Lindsey Ann, Shoaie, Saeed, Shawcross, Debbie Lindsay

Source: Journal of hepatology. 76(2):332-342

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100153315778.0x000001&indx=1&recIds=ETOCvdc_100153315778.0x000001

Characterization of Root Canal Microbiota in Teeth Diagnosed with Irreversible Pulpitis

Authors: Zahran, Shatha, Witherden, Elizabeth, Mannocci, Francesco, Koller, Garrit

Source: In Journal of Endodontics March 2021 47(3):415-423

Using systems biology approaches to elucidate cause and effect in host–microbiome interactions

Authors: Witherden, Elizabeth A., Moyes, David L., Bruce, Kenneth D., Ehrlich, S. Dusko, Shoaie, Saeed

Source: In Current Opinion in Systems Biology June 2017 3:141-146

In-depth shotgun metagenomic analysis of the oral and gut microbiome identifies striking overlap in microbial community structure, virulence factors and antimicrobial resistance genes based on stage and severity of cirrhosis

Authors: Lee, Sunjae, Arefaine, Bethlehem, Begum, Neelu, Witherden, Elizabeth, Stamouli, Marilena, Harzandi, Azadeh, Zamalloa, Ane, Corcoran, Eleanor, Williams, Roger, Chokshi, Shilpa, Proctor, Gordon, Mardinoglu, Adil, Uhlen, Mathias, Shoaie, Saeed, Patel, Vishal C.

Source: Journal of hepatology. 77(S1):S68-S69

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167073298.0x000001&indx=1&recIds=ETOCvdc_100167073298.0x000001

Abundance and diversity of resistomes differ between healthy human oral cavities and gut

Authors: Carr, Victoria R., Witherden, Elizabeth A., Lee, Sunjae, Shoaie, Saeed, Mullany, Peter, Proctor, Gordon B., Gomez-Cabrero, David, Moyes, David L.

Source: Nature communications. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161812162.0x000001&indx=1&recIds=ETOCvdc_100161812162.0x000001

An evaluation of SNP-based PCR methods for the detection of β-lactamase-negative ampicillin-resistant Haemophilus influenzae

Authors: Witherden, Elizabeth A., Kunde, Dale, Tristram, Stephen G.

Source: In Journal of Infection and Chemotherapy 2012 18(4):451-455

OS089 - In-depth shotgun metagenomic analysis of the oral and gut microbiome identifies striking overlap in microbial community structure, virulence factors and antimicrobial resistance genes based on stage and severity of cirrhosis

Authors: Lee, Sunjae, Arefaine, Bethlehem, Begum, Neelu, Witherden, Elizabeth, Stamouli, Marilena, Harzandi, Azadeh, Zamalloa, Ane, Corcoran, Eleanor, Williams, Roger, Chokshi, Shilpa, Proctor, Gordon, Mardinoglu, Adil, Uhlen, Mathias, Shoaie, Saeed, Patel, Vishal C.

Source: In Journal of Hepatology July 2022 77 Supplement 1:S68-S69

Chapter 22 - Mycobiome and Gut Inflammation: Implications in Gut Disease

Authors: Witherden, Elizabeth A., Moyes, David L.

Source: In Immunity and Inflammation in Health and Disease 2018:271-280

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Interspecies Transfer of the Penicillin-Binding Protein 3-Encoding Gene ftsIbetween Haemophilus influenzaeand Haemophilus haemolyticusCan Confer Reduced Susceptibility to β-Lactam Antimicrobial Agents

Authors: Søndergaard, Annette, Witherden, Elizabeth A., Nørskov-Lauritsen, Niels, Tristram, Stephen G.

Source: Antimicrobial Agents and Chemotherapy; April 2015, Vol. 59 Issue: 7 p4339-4342, 4p

Prevalence and mechanisms of β-lactam resistance in Haemophilus haemolyticus.

Authors: Witherden, Elizabeth A., Tristram, Stephen G.

Source: Journal of Antimicrobial Chemotherapy (JAC); May2013, Vol. 68 Issue 5, p1049-1053, 5p

Subject Terms: LACTAMS, AMIDES, HAEMOPHILUS, PASTEURELLACEAE, HAEMOPHILUS influenzae

List of Contributors

Authors: Ambalam, Padma, Antonicelli, Frank, Asrafuzzaman, Syed, Bagchi, Debasis, Bernard, Philippe, Bhakkiyalakshmi, Elango, Biswas, Chhanda, Bonesi, Marco, Bosco, Nabil, Cexus, Olivier, Chaffee, Scott, Chatterjee, Shampa, Cheong, Dorothy H.J., Choe, Sung J., Das, Amitava, De Meester, Ingrid, Del Rosario, Fernando, Dholia, Neeraj, Doble, Mukesh, Falasca, Katia, Ganguly, Koustav, George, Leema, Ghosh, Nandini, Grimes, Catherine L., He, Zhaoping, Hood, Elizabeth D., Howes, Melanie-Jayne R., Hussain, Shaik Abdul, Jeong, Se K., Jungraithmayr, Wolfgang, Kabuki, Toshihide, Kawasaki, Yoshihiro, Kothari, Charmy, Larbi, Anis, Le Jan, Sébastien, Lee, Eun-Ji, Lee, Jeong-Sang, Lee, Robert J., Lim, Chae J., Loizzo, Monica R., Menichini, Francesco, Mallilankaraman, Karthik B., Manoj Kumar Kingsley, Selvaraj, McMahon, Derek B., Melnyk, James E., Moriya, Tomohiro, Moyes, David L., Na, Hye-Kyung, Nair, Pradeep M.K., Nishihira, Jun, Nishimura, Mie, Park, Keedon, Park, Kyungho, Patel, Priyal, Peethambaran, Bela, Pithva, Sheetal, Plée, Julie, Pothuraju, Ramesh, Prasad, Nupoor, Purama, Ravi Kiran, Qiao, Yongkang, Raman, Maya, Ramkumar, Kunka M., Ramteke, Prerna, Reale, Marcella, Roy, Sashwati, Sakai, Fumihiko, Salwa, Hyndavi, Sampath, Venkatesh, Schaefer, Amy K., Sen, Chandan K., Shah, Rahul, Sharma, Ashish K., Sharma, Minaxi, Sifers, Travis M., Simes, Dina C., Sireesh, Dornadula, Surh, Young-Joon, Thimraj, Tania A., Tran, Thai, Tundis, Rosa, Upadhyay, Swapna, Vazquez-Medina, Jose P., Viegas, Carla S.B., Vishnu Bhat, Ballambattu, Vliegen, Gwendolyn, Witherden, Elizabeth A., Yadav, Umesh C.S., Yenuganti, Vengala Rao, You, Huihui

Source: In Immunity and Inflammation in Health and Disease 2018:xiii-xiv

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Prevalence and genotypic characteristics of β-lactamase-negative ampicillin-resistant Haemophilus influenzae in Australia.

Authors: Witherden, Elizabeth A., Montgomery, Janet, Henderson, Barbara, Tristram, Stephen G.

Source: Journal of Antimicrobial Chemotherapy (JAC); May2011, Vol. 66 Issue 5, p1013-1015, 3p, 1 Chart

Subject Terms: AMPICILLIN, HAEMOPHILUS influenzae, AMINO acids, BETA lactamases

Geographic Terms: AUSTRALIA