EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes

Authors: Richter, Daniel J., Berney, Cédric, Strassert, Jürgen F. H., Poh, Yu-Ping, Herman, Emily K., Muñoz-Gómez, Sergio A., Wideman, Jeremy G., Burki, Fabien, de Vargas, Colomban

Source: Peer Community Journal, Vol 2, Iss , Pp - (2022)

Subject Terms: Archaeology, CC1-960, Science

File Description: electronic resource

Relation: https://peercommunityjournal.org/articles/10.24072/pcjournal.173/; https://doaj.org/toc/2804-3871

Access URL: https://doaj.org/article/0aaaccdebcfb402f82b983a426590c9f

A dynamin superfamily-like pseudoenzyme coordinates with MICOS to promote cristae architecture

Authors: Kumar, Abhishek, Gok, Mehmet Oguz, Nguyen, Kailey N., Connor, Olivia M., Reese, Michael L., Wideman, Jeremy G., Muñoz-Gómez, Sergio A., Friedman, Jonathan R.

Source: In Current Biology 17 June 2024 34(12):2606-2622

The persistent homology of mitochondrial ATP synthases

Authors: Sinha, Savar D. ¹, Wideman, Jeremy G. ^{1, 2, ∗}

Source: In iScience 19 May 2023 26(5)

Evidence for Macroevolution: Using a Microbial Phylogenetics Laboratory to Teach Endosymbiosis.

Authors: Hoskinson, Joshua S. (AUTHOR) jhoskinson@mohave.edu, Wideman, Jeremy G. (AUTHOR) jeremy.wideman@asu.edu

Source: American Biology Teacher (University of California Press). Feb2025, Vol. 87 Issue 2, p93-102. 10p.

Subject Terms: *PEDAGOGICAL content knowledge, *MOLECULAR phylogeny, *RIBOSOMAL RNA, *ENDOSYMBIOSIS, *MACROEVOLUTION

An account of conserved functions and how biologists use them to integrate cell and evolutionary biology.

Authors: Sterner, Beckett¹, bsterne1@asu.edu, Elliott, Steve², Wideman, Jeremy G.¹

Source: Biology & Philosophy; Oct2023, Vol. 38 Issue 5, p1-23, 23p

Evolution: Divergent trajectories predate the origins of animals and fungi

Authors: Jirsová, Dagmar, Wideman, Jeremy G.

Source: Current biology. 32(21):R1242-R1244

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100179074190.0x000001&indx=1&recIds=ETOCvdc_100179074190.0x000001

A single-cell genome reveals diplonemid-like ancestry of kinetoplastid mitochondrial gene structure

Authors: Wideman, Jeremy G., Lax, Gordon, Leonard, Guy, Milner, David S., Rodríguez-Martínez, Raquel, Simpson, Alastair G. B., Richards, Thomas A.

Source: Philosophical Transactions: Biological Sciences, 2019 Nov . 374(1786), 1-10.

Access URL: https://www.jstor.org/stable/26840986

Neutral evolution of cellular phenotypes

Authors: Wideman, Jeremy G, Novick, Aaron, Muñoz-Gómez, Sergio A, Doolittle, W Ford

Source: In Current Opinion in Genetics & Development October 2019 58-59:87-94

Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists

Authors: Wideman, Jeremy G., Monier, Adam, Rodríguez-Martínez, Raquel, Leonard, Guy, Cook, Emily, Poirier, Camille, Maguire, Finlay, Milner, David S., Irwin, Nicholas A. T., Moore, Karen, Santoro, Alyson E., Keeling, Patrick J., Worden, Alexandra Z., Richards, Thomas A.

Source: Nature microbiology. 5(1):154-165

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193509339.0x000001&indx=1&recIds=ETOCvdc_100193509339.0x000001

Cell Biology: Functional Conservation, Structural Divergence, and Surprising Convergence in the MICOS Complex of Trypanosomes

Authors: Wideman, Jeremy G., Muñoz-Gómez, Sergio A.

Source: In Current Biology 5 November 2018 28(21):R1245-R1248

Evolutionary conservation of a core fungal phosphate homeostasis pathway coupled to development in Blastocladiella emersonii

Authors: Gomes-Vieira, André L., Wideman, Jeremy G., Paes-Vieira, Lisvane, Gomes, Suely L., Richards, Thomas A., Meyer-Fernandes, José Roberto

Source: In Fungal Genetics and Biology June 2018 115:20-32

Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists

Authors: Wideman, Jeremy G., Monier, Adam, Rodríguez-Martínez, Raquel, Leonard, Guy, Cook, Emily, Poirier, Camille, Maguire, Finlay, Milner, David S., Irwin, Nicholas A. T., Moore, Karen, Santoro, Alyson E., Keeling, Patrick J., Worden, Alexandra Z., Richards, Thomas A.

Source: Nature microbiology. 5(1):154-165

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100130016403.0x000001&indx=1&recIds=ETOCvdc_100130016403.0x000001

ER-shaping atlastin proteins act as central hubs to promote flavivirus replication and virion assembly

Authors: Neufeldt, Christopher J., Cortese, Mirko, Scaturro, Pietro, Cerikan, Berati, Wideman, Jeremy G., Tabata, Keisuke, Moraes, Thaís, Oleksiuk, Olga, Pichlmair, Andreas, Bartenschlager, Ralf

Source: Nature microbiology. 4(12):2416-2429

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100130017481.0x000001&indx=1&recIds=ETOCvdc_100130017481.0x000001

Chapter Eight - An introduction to comparative genomics, EukProt, and the reciprocal best hit (RBH) method for bench biologists: Ancestral phosphorylation of Tom22 in eukaryotes as a case study

Authors: Leka, Kamawela P., Wideman, Jeremy G.

Source: In Methods in Enzymology 2024 707:209-234

A new mitofusin topology places the redox-regulated C terminus in the mitochondrial intermembrane space

Authors: Mattie, Sevan, Riemer, Jan, Wideman, Jeremy G., McBride, Heidi M.

Source: Journal of cell biology. 217(2):507-516

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN619320620&indx=1&recIds=ETOCRN619320620

The evolution of ERMIONE in mitochondrial biogenesis and lipid homeostasis: An evolutionary view from comparative cell biology

Authors: Wideman, Jeremy G., Muñoz-Gómez, Sergio A.

Source: In BBA - Molecular and Cell Biology of Lipids August 2016 1861(8) Part B:900-912

Losing Complexity: The Role of Simplification in Macroevolution

Authors: O’Malley, Maureen A., Wideman, Jeremy G., Ruiz-Trillo, Iñaki

Source: In Trends in Ecology & Evolution August 2016 31(8):608-621

First report of mitochondrial COI in foraminifera and implications for DNA barcoding.

Authors: Macher, Jan-Niklas¹ (AUTHOR) jan.macher@naturalis.nl, Wideman, Jeremy G.² (AUTHOR), Girard, Elsa B.^1,3 (AUTHOR), Langerak, Anouk¹ (AUTHOR), Duijm, Elza¹ (AUTHOR), Jompa, Jamaluddin⁴ (AUTHOR), Sadekov, Aleksey⁵ (AUTHOR), Vos, Rutger^1,6 (AUTHOR), Wissels, Richard¹ (AUTHOR), Renema, Willem^1,3 (AUTHOR)

Source: Scientific Reports. 11/12/2021, Vol. 11 Issue 1, p1-9. 9p.

Subject Terms: *CYTOCHROME oxidase, *GENETIC barcoding, *CARBON cycle, *FORAMINIFERA, *SHOTGUN sequencing, *RIBOSOMAL RNA

Mitochondrial genomes revisited: why do different lineages retain different genes?

Authors: Butenko, Anzhelika, Lukeš, Julius, Speijer, Dave, Wideman, Jeremy G.

Source: BMC Biology; 1/25/2024, Vol. 22 Issue 1, p1-16, 16p

Subject Terms: GENETIC drift, POPULATION genetics, MITOCHONDRIA, GENETIC transformation, GENES, GENOMES

A functional bacteria-derived restriction modification system in the mitochondrion of a heterotrophic protist.

Authors: Milner, David S.¹ (AUTHOR), Wideman, Jeremy G.^2,3 (AUTHOR) jeremy.wideman@asu.edu, Stairs, Courtney W.⁴ (AUTHOR), Dunn, Cory D.⁵ (AUTHOR), Richards, Thomas A.¹ (AUTHOR) jeremy.wideman@asu.edu

Source: PLoS Biology. 4/23/2021, Vol. 19 Issue 4, p1-20. 20p. 1 Color Photograph, 2 Diagrams, 1 Graph.

Subject Terms: *MITOCHONDRIA, *EUKARYOTIC genomes, *HORIZONTAL gene transfer, *PLANT mitochondria, *EUKARYOTIC cells, *BACTERIAL cells, *RNA splicing