Host population dynamics influence Leptospira spp. transmission patterns among Rattus norvegicus in Boston, Massachusetts, US.

Authors: Stone, Nathan E.¹ (AUTHOR), Hamond, Camila² (AUTHOR), Clegg, Joel R.¹ (AUTHOR), McDonough, Ryelan F.¹ (AUTHOR), Bourgeois, Reanna M.¹ (AUTHOR), Ballard, Rebecca¹ (AUTHOR), Thornton, Natalie B.¹ (AUTHOR), Nuttall, Marianece¹ (AUTHOR), Hertzel, Hannah³ (AUTHOR), Anderson, Tammy² (AUTHOR), Whealy, Ryann N.^1,4 (AUTHOR), Timm, Skylar^1,4 (AUTHOR), Roberts, Alexander K.^1,4 (AUTHOR), Barragán, Verónica⁵ (AUTHOR), Phipatanakul, Wanda⁶ (AUTHOR), Leibler, Jessica H.⁷ (AUTHOR), Benson, Hayley³ (AUTHOR), Specht, Aubrey³ (AUTHOR), White, Ruairi³ (AUTHOR), LeCount, Karen² (AUTHOR)

Source: PLoS Neglected Tropical Diseases. 4/15/2025, Vol. 19 Issue 4, p1-30. 30p.

Subject Terms: *RATTUS norvegicus, *WHOLE genome sequencing, *PATHOGENIC bacteria, *ZOONOSES, *RAT control, *LEPTOSPIRA interrogans

Whole genome-based surveillance for human adenovirus-related diseases in Kobe City, Japan, 2018–2022.

Authors: Tanimoto, Yoshihiko^1,2 (AUTHOR) yoshihiko0218tanimoto@gmail.com, Ohyama, Minori¹ (AUTHOR), Ito, Erika¹ (AUTHOR), Akiyoshi, Kyoko¹ (AUTHOR), Onishi, Yuka¹ (AUTHOR), Mori, Ai¹ (AUTHOR), Nomoto, Ryohei¹ (AUTHOR)

Source: BMC Research Notes. 4/15/2025, Vol. 18 Issue 1, p1-8. 8p.

Subject Terms: *WHOLE genome sequencing, *HUMAN genetics, *HUMAN adenoviruses, *LIFE sciences, *SEQUENCE analysis

Geographic Terms: JAPAN

Unveiling the heterosis pattern of modern maize breeding in Southwest China through population structure and genetic diversity analysis.

Authors: Ma, Peng^1,2 (AUTHOR) mapeng561@163.com, Zhang, Hua^1,2 (AUTHOR), Shui, Hongxia^1,2 (AUTHOR), Zhang, Xuecai³ (AUTHOR), Wang, Xiuquan^1,2 (AUTHOR), Gao, Shibin^4,5,6 (AUTHOR), Zhang, Haiying^5,6 (AUTHOR), Nie, Zhi⁷ (AUTHOR), Qing, Chunyan^1,2 (AUTHOR), Lu, Tingqi^1,2 (AUTHOR), Pang, Qihua^1,2 (AUTHOR), Pei, Wenzheng^1,2 (AUTHOR), Chen, Hongmei^1,2 (AUTHOR), He, Chenyan^1,2 (AUTHOR), Luo, Bowen^4,5,6 (AUTHOR) bowen_maize@sicau.edu.cn, He, Dan^1,2 (AUTHOR) myhd095@163.com

Source: BMC Plant Biology. 4/15/2025, Vol. 25 Issue 1, p1-16. 16p.

Subject Terms: *WHOLE genome sequencing, *SINGLE nucleotide polymorphisms, *LIFE sciences, *GENETIC variation, *FOOD crops

A diagnostic model for non-invasive urothelial cancer early detection based on methylation of urinary tumor DNA.

Authors: Wu, Ningning¹ (AUTHOR), Wu, Zhen¹ (AUTHOR), Wang, Yanwen² (AUTHOR), Zhang, Anqi³ (AUTHOR), Peng, Yongfei¹ (AUTHOR), Cheng, Yan³ (AUTHOR), Lei, Hongsong⁴ (AUTHOR), Liu, Siwen¹ (AUTHOR), Zhao, Jie¹ (AUTHOR) zhao.jie@biochainbj.com, Li, Tianbao¹ (AUTHOR) li.tianbao@biochainbj.com, Zhou, Guangpeng¹ (AUTHOR) zhou.guangpeng@biochainbj.com

Source: Cancer Cell International. 4/15/2025, Vol. 25 Issue 1, p1-13. 13p.

Subject Terms: *WHOLE genome sequencing, *TRANSITIONAL cell carcinoma, *MEDICAL technology, *URINARY organs, *EARLY detection of cancer

Genomic Characterization of NDM‐1 Harboring Extensively‐Drug Resistance Klebsiella pneumoniae Isolate From ICU‐Admitted Patient With COVID‐19.

Authors: Zomorodi, Abolfazl Rafati¹ (AUTHOR), Salimizand, Himen^2,3 (AUTHOR), Mohseni, Niloufar⁴ (AUTHOR), Hafiz, Maryam⁴ (AUTHOR), Nikoueian, Helia⁴ (AUTHOR), Gholamhosseini-Moghaddam, Tahereh⁴ (AUTHOR), Aflakian, Fatemeh^4,5 (AUTHOR) fatemeh_aflakian@yahoo.com, Ramezani, Amitis (AUTHOR)

Source: Journal of Tropical Medicine (16879686). 4/14/2025, Vol. 2025, p1-6. 6p.

Subject Terms: *WHOLE genome sequencing, *GENOMICS, *INTENSIVE care units, *ANTIMICROBIAL stewardship, *KLEBSIELLA pneumoniae, *DRUG resistance in microorganisms

Genomic characterization and drug resistance of Bordetella pseudohinzii first isolated from wild niviventer.

Authors: Zhou, Jian^1,2 (AUTHOR) 1952375955@qq.com, Mao, Sha¹ (AUTHOR) acems9899101@163.com, Liu, Ying² (AUTHOR) 24166746@qq.com, Gu, Tao¹ (AUTHOR) 2411153528@qq.com, Zhou, Jingzhu² (AUTHOR) 458520264@qq.com, Chen, Fengming² (AUTHOR) fengmingchen@hnu.edu.cn, Hu, Yong¹ (AUTHOR) huyong1979@gmc.edu.cn, Li, Shijun^1,2 (AUTHOR) zjumedjun@163.com

Source: BMC Microbiology. 4/12/2025, Vol. 25 Issue 1, p1-13. 13p.

Subject Terms: *NUCLEIC acid hybridization, *WHOLE genome sequencing, *TIME-of-flight mass spectrometry, *RODENT populations, *LIFE sciences

Epidemiological characteristics and genomic analysis of respiratory adenovirus in Jining City from February 2023 to July 2024.

Authors: Dou, Huixin^1,2,3 (AUTHOR), Chen, Chunmei⁴ (AUTHOR), Song, Tongyun⁵ (AUTHOR), Sun, Xu^2,3 (AUTHOR), He, Feifei⁶ (AUTHOR), Jia, Yongjian^2,3 (AUTHOR), Wang, Xiaoyu^2,3 (AUTHOR), Jiang, Yajuan^2,3 (AUTHOR), Yue, Ying⁶ (AUTHOR), Huang, Shiqing⁶ (AUTHOR), Yan, ShiGan¹ (AUTHOR) yanshigan@126.com, Jiao, Boyan^2,3 (AUTHOR) j198319831983@126.com, Jiao, Baihai⁷ (AUTHOR) Bjiao@uchc.edu

Source: BMC Genomics. 4/14/2025, Vol. 26 Issue 1, p1-12. 12p.

Subject Terms: *WHOLE genome sequencing, *LIFE sciences, *HUMAN genetics, *NUCLEIC acids, *GENOMICS

Molecular epidemiology and in silico prediction of ciprofloxacin resistance in Salmonella enterica in Canada, 2017–2022.

Authors: Wilke, MacKenzie A.P.¹ (AUTHOR), Mistry, Ketna² (AUTHOR), Thumbi, David² (AUTHOR), Li, Xiao Rui¹ (AUTHOR), Charlebois, Audrey³ (AUTHOR), Cormier, Ashley C.⁴ (AUTHOR), Mickanuck, Katrina⁴ (AUTHOR), Avery, Brent P.⁴ (AUTHOR), Murphy, Colleen⁴ (AUTHOR), Deckert, Anne E.⁴ (AUTHOR), Kearney, Ashley¹ (AUTHOR), Campbell, Jennifer¹ (AUTHOR), Christianson, Sara¹ (AUTHOR), Alexander, David C.^5,6 (AUTHOR), El Bailey, Sameh⁷ (AUTHOR), Bekal, Sadjia⁸ (AUTHOR), Chui, Linda^9,10 (AUTHOR), Ding, Xiaofeng¹¹ (AUTHOR), Dingle, Tanis C.^12,13 (AUTHOR), Haldane, David¹⁴ (AUTHOR)

Source: Canadian Journal of Microbiology. 4/14/2025, Vol. 71, p1-8. 8p.

Subject Terms: *PUBLIC health surveillance, *WHOLE genome sequencing, *SALMONELLA enterica, *MOLECULAR epidemiology, *PHENOTYPIC plasticity, *SALMONELLA diseases

Actinomadura welshii sp. nov., a New Mycetoma Agent in Mexico.

Authors: Vera-Cabrera, Lucio¹ (AUTHOR) luvera_99@yahoo.com, Molina-Torres, Carmen A.¹ (AUTHOR), Crane, Adele E.² (AUTHOR), Cantú-Alvarez, Mayra G.¹ (AUTHOR), Aguilera-Valenciano, Mario A.¹ (AUTHOR), Gallardo-Rocha, Anabel¹ (AUTHOR), Escalante-Fuentes, Wendy G.¹ (AUTHOR), Ocampo-Candiani, Jorge¹ (AUTHOR), Avanzi, Charlotte² (AUTHOR)

Source: PLoS Neglected Tropical Diseases. 4/11/2025, Vol. 19 Issue 4, p1-11. 11p.

Subject Terms: *NUCLEOTIDE sequencing, *WHOLE genome sequencing, *MOLECULAR biology, *GENOMICS, *RIBOSOMAL RNA

Degradation capability of Acinetobacter indicus LXX12 on tobacco straw and its whole genome analysis.

Authors: Lu, Xiaoxiao^1,2 (AUTHOR), Ying, Huang^1,2 (AUTHOR) yhuang6@gzu.edu.cn, Liu, Jing³ (AUTHOR) liujingcre@163.com, Gou, Jianyu³ (AUTHOR), Zhou, Zhengxiong³ (AUTHOR), Xie, Shishuang³ (AUTHOR)

Source: Scientific Reports. 4/11/2025, Vol. 15 Issue 1, p1-12. 12p.

Subject Terms: *LIFE sciences, *WHOLE genome sequencing, *GLYCOSIDASES, *CYTOLOGY, *AGRICULTURAL wastes

Endogenous retrovirus loci and induced changes in gene expression in Japanese indigenous chickens.

Authors: Ishihara, Shinya¹ (AUTHOR) shinyais@nvlu.ac.jp, Shiraishi, Jun-ichi¹ (AUTHOR), Shimamoto, Saki² (AUTHOR), Ijiri, Daichi² (AUTHOR)

Source: Scientific Reports. 4/10/2025, Vol. 15 Issue 1, p1-9. 9p.

Subject Terms: *GENE expression, *WHOLE genome sequencing, *GENETIC variation, *POULTRY breeding, *BROILER chickens

Comparative genomic analysis of Helicobacter pylori isolates from gastric cancer and gastritis in China.

Authors: Kong, Peng-fei¹ (AUTHOR), Yan, Yong-hao¹ (AUTHOR), Duan, Yan-tao¹ (AUTHOR), Fang, Yan-tian¹ (AUTHOR), Dou, Yi¹ (AUTHOR), Xu, Yong-hu¹ (AUTHOR), Xu, Da-zhi¹ (AUTHOR) xudzh@shca.org.cn

Source: BMC Cancer. 4/7/2025, Vol. 25 Issue 1, p1-11. 11p.

Subject Terms: *WHOLE genome sequencing, *SINGLE nucleotide polymorphisms, *HELICOBACTER pylori, *GENOMICS, *CANCER genetics

Analysis of targeted and whole genome sequencing of PacBio HiFi reads for a comprehensive genotyping of gene-proximal and phenotype-associated Variable Number Tandem Repeats.

Authors: Javadzadeh, Sara¹ (AUTHOR), Adamson, Aaron² (AUTHOR), Park, Jonghun¹ (AUTHOR), Jo, Se-Young^1,3 (AUTHOR), Ding, Yuan-Chun² (AUTHOR), Bakhtiari, Mehrdad¹ (AUTHOR), Bansal, Vikas⁴ (AUTHOR) vibansal@ucsd.edu, Neuhausen, Susan L.² (AUTHOR) sneuhausen@coh.org, Bafna, Vineet¹ (AUTHOR) vbafna@ucsd.edu

Source: PLoS Computational Biology. 4/7/2025, Vol. 21 Issue 4, p1-21. 21p.

Subject Terms: *WHOLE genome sequencing, *TANDEM repeats, *GENETIC variation, *PHENOTYPES, *PAN-genome

MetaDAVis: An R shiny application for metagenomic data analysis and visualization.

Authors: Jagadesan, Sankarasubramanian¹ (AUTHOR), Guda, Chittibabu^1,2 (AUTHOR) babu.guda@unmc.edu

Source: PLoS ONE. 4/7/2025, Vol. 20 Issue 4, p1-10. 10p.

Subject Terms: *WHOLE genome sequencing, *NUCLEOTIDE sequencing, *HUMAN microbiota, *STATISTICAL correlation, *DATA analysis

Functional analysis of Parabacteroides distasonis F4: a novel probiotic strain linked to calf growth and rumen fermentation.

Authors: Feng, Xiaoran¹ (AUTHOR) fengxiaoran0521@163.com, Liu, Yunlong¹ (AUTHOR), Xu, Shengyang¹ (AUTHOR), Ma, Junnan¹ (AUTHOR), Yuan, Hao¹ (AUTHOR), Wang, Haixin¹ (AUTHOR), Hu, Jiachen² (AUTHOR), Jin, Sijie² (AUTHOR), Liu, Shanji² (AUTHOR), Zhong, Jin² (AUTHOR), Ma, Tao¹ (AUTHOR), Tu, Yan¹ (AUTHOR) tuyan@caas.cn

Source: Journal of Animal Science & Biotechnology. 4/4/2025, Vol. 16 Issue 1, p1-17. 17p.

Subject Terms: *AMINO acid metabolism, *WHOLE genome sequencing, *LIFE sciences, *DIETARY supplements, *ORGANIC acids, *RUMEN fermentation, *PROBIOTICS

Common variants in the CPT1A gene are associated with cataracts in Northern breeds of domestic dog.

Authors: Ricketts, Sally L.¹ (AUTHOR) sr958@cam.ac.uk, Ahonen, Saija^2,3,4 (AUTHOR), Pettitt, Louise¹ (AUTHOR), Freyer, Jamie⁵ (AUTHOR), Ellis, Stuart⁶ (AUTHOR), Jenkins, Christopher A.¹ (AUTHOR), Kaukonen, Maria^2,3,4 (AUTHOR), Boursnell, Mike¹ (AUTHOR), Schofield, Ellen¹ (AUTHOR), Forman, Oliver P.⁷ (AUTHOR), Lohi, Hannes^2,3,4 (AUTHOR), Mellersh, Cathryn S.¹ (AUTHOR)

Source: PLoS ONE. 4/4/2025, Vol. 20 Issue 4, p1-18. 18p.

Subject Terms: *GENOME-wide association studies, *WHOLE genome sequencing, *CARNITINE palmitoyltransferase, *DOGS, *VISION disorders, *DOG breeds

Genetic influence of a STAU2 frameshift mutation and RELN regulatory elements on performance in Icelandic horses.

Authors: Sigurðardóttir, Heiðrún^1,2 (AUTHOR) heidrun.sigurdardottir@slu.se, Eriksson, Susanne¹ (AUTHOR) susanne.eriksson@slu.se, Niazi, Adnan¹ (AUTHOR) adnan.niazi@slu.se, Rhodin, Marie¹ (AUTHOR) marie.rhodin@slu.se, Albertsdóttir, Elsa³ (AUTHOR) elsaa@centrum.is, Kristjansson, Thorvaldur^2,4 (AUTHOR) thorvaldur@rml.is, Lindgren, Gabriella^1,5 (AUTHOR) gabriella.lindgren@slu.se

Source: Scientific Reports. 4/4/2025, Vol. 15 Issue 1, p1-15. 15p.

Subject Terms: *WHOLE genome sequencing, *LIFE sciences, *AMINO acid sequence, *HORSE breeding, *GENETICS

Diagnostic accuracy of nanopore sequencing for detecting Mycobacterium tuberculosis and drug-resistant strains: a systematic review and meta-analysis.

Authors: Carandang, Timothy Hudson David Culasino¹ (AUTHOR), Cunanan, Dianne Jaula² (AUTHOR), Co, Gail S.³ (AUTHOR), Pilapil, John David⁴ (AUTHOR), Garcia, Juan Ignacio^5,6 (AUTHOR), Restrepo, Blanca I.^6,7 (AUTHOR), Yotebieng, Marcel^6,8 (AUTHOR), Torrelles, Jordi B.^5,6 (AUTHOR) JTorrelles@txbiomed.org, Notarte, Kin Israel⁹ (AUTHOR) knotart1@jhmi.edu

Source: Scientific Reports. 4/4/2025, Vol. 15 Issue 1, p1-19. 19p.

Subject Terms: *WHOLE genome sequencing, *MYCOBACTERIUM tuberculosis, *DRUG resistance, *ODDS ratio, *LINEZOLID, *RIFAMPIN

Reinvigorating AMR resilience: leveraging CRISPR–Cas technology potentials to combat the 2024 WHO bacterial priority pathogens for enhanced global health security—a systematic review.

Authors: Okesanya, Olalekan John^1,2,3 (AUTHOR) okesanyaolalekanjohn@gmail.com, Ahmed, Mohamed Mustaf⁴ (AUTHOR) momustafahmed@simad.edu.so, Ogaya, Jerico Bautista^5,6 (AUTHOR) jericoogaya13@gmail.com, Amisu, Blessing Olawunmi⁷ (AUTHOR) olawunmiblessing123@gmail.com, Ukoaka, Bonaventure Michael⁸ (AUTHOR) bonaventureukoaka@gmail.com, Adigun, Olaniyi Abideen⁹ (AUTHOR) olaniyiadigun.oa@gmail.com, Manirambona, Emery¹⁰ (AUTHOR) manemery1@gmail.com, Adebusuyi, Olakulehin¹¹ (AUTHOR) olakulehin13@gmail.com, Othman, Zhinya Kawa¹² (AUTHOR) zhinya11@gmail.com, Oluwakemi, Olanegan Gloria¹³ (AUTHOR) olanegangloria@gmail.com, Ayando, Oluwaseunayo Deborah¹⁴ (AUTHOR) ayandodeborah0@gmail.com, Tan, Maria Ivy Rochelle S.¹⁵ (AUTHOR) mstan4@up.edu.ph, Idris, Nimat Bola¹⁶ (AUTHOR) nbidris@alhikmah.edu.ng, Kayode, Hassan Hakeem¹⁷ (AUTHOR) hakeemkayode07@gmail.com, Oso, Tolutope Adebimpe² (AUTHOR) bimpeadebayo2002@yahoo.com, Ahmed, Musa¹⁸ (AUTHOR) ahmedopeyemi25@gmail.com, Kouwenhoven, M. B. N.¹⁹ (AUTHOR) t.kouwenhoven@xjtlu.edu.cn, Ibrahim, Adamu Muhammad²⁰ (AUTHOR) amuhammadibrahim37@gmail.com, Lucero-Prisno III, Don Eliseo^21,22,23 (AUTHOR) don-eliseo.lucero-prisno@lshtm.ac.uk

Source: Tropical Medicine & Health. 4/2/2025, Vol. 53 Issue 1, p1-26. 26p.

Subject Terms: *WHOLE genome sequencing, *ESCHERICHIA coli, *GENE silencing, *DRUG resistance in microorganisms, *MIDDLE-income countries

Phenotypic and Genomic Assessment of Antimicrobial Resistance and Virulence Factors Determinants in Salmonella Heidelberg Isolated from Broiler Chickens.

Authors: de Almeida Figueira, Arthur¹ (AUTHOR), Salles Dias, Thomas^1,2 (AUTHOR) thomassalles@id.uff.br, Alves Costa, Gisllany¹ (AUTHOR), Lima da Costa Abreu, Dayse^1,2 (AUTHOR), dos Santos Medeiros, Luciana² (AUTHOR), Léo de Almeida Pereira, Virginia^1,2 (AUTHOR)

Source: Animals (2076-2615). Apr2025, Vol. 15 Issue 7, p1003. 10p.

Subject Terms: *WHOLE genome sequencing, *FOODBORNE diseases, *POULTRY products, *POULTRY as food, *DRUG resistance in microorganisms