MultiCo3D: Multi-Label Voxel Contrast for One-Shot Incremental Segmentation of 3D Neuroimages

Authors: Xu, Hao, Xue, Tengfei, Liu, Dongnan, Chen, Yuqian, Zhang, Fan, Westin, Carl-Fredrik, Kikinis, Ron, O'Donnell, Lauren J., Cai, Weidong

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2503.06598

DDCSR: A Novel End-to-End Deep Learning Framework for Cortical Surface Reconstruction from Diffusion MRI

Authors: Li, Chengjin, Chen, Yuqian, Sochen, Nir A., Zhang, Wei, Westin, Carl-Fredrik, Yogesh, Rathi, O'Donnell, Lauren J., Pasternak, Ofer, Zhang, Fan

Subject Terms: Quantitative Biology - Tissues and Organs, Computer Science - Graphics, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/2503.03790

Signal-adapted decomposition of graph signals

Authors: Behjat, Harry H., Westin, Carl-Fredrik, Ossenkoppele, Rik, Van De Ville, Dimitri

Subject Terms: Electrical Engineering and Systems Science - Signal Processing

Access URL: http://arxiv.org/abs/2502.11845

Medical Image Registration Meets Vision Foundation Model: Prototype Learning and Contour Awareness

Authors: Xu, Hao, Xue, Tengfei, Fan, Jianan, Liu, Dongnan, Chen, Yuqian, Zhang, Fan, Westin, Carl-Fredrik, Kikinis, Ron, O'Donnell, Lauren J., Cai, Weidong

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2502.11440

DDEvENet: Evidence-based Ensemble Learning for Uncertainty-aware Brain Parcellation Using Diffusion MRI

Authors: Li, Chenjun, Yang, Dian, Yao, Shun, Wang, Shuyue, Wu, Ye, Zhang, Le, Li, Qiannuo, Cho, Kang Ik Kevin, Seitz-Holland, Johanna, Ning, Lipeng, Legarreta, Jon Haitz, Rathi, Yogesh, Westin, Carl-Fredrik, O'Donnell, Lauren J., Sochen, Nir A., Pasternak, Ofer, Zhang, Fan

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2409.07020

A Registration- and Uncertainty-Based Framework for White Matter Tract Segmentation with Only One Annotated Subject

Authors: Xu, Hao, Xue, Tengfei, Liu, Dongnan, Zhang, Fan, Westin, Carl-Fredrik, Kikinis, Ron, O'Donnell, Lauren J., Cai, Weidong

Source: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2023 IEEE 20th International Symposium on. :1-5 Apr, 2023

Relation: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI)

Diffusion MRI with free gradient waveforms on a high-performance gradient system: Probing restriction and exchange in the human brain

Authors: Chakwizira, Arthur, Zhu, Ante, Foo, Thomas, Westin, Carl-Fredrik, Szczepankiewicz, Filip, Nilsson, Markus

Subject Terms: Physics - Medical Physics

Access URL: http://arxiv.org/abs/2304.02764

Cortical Surface-Informed Volumetric Spatial Smoothing of fMRI Data via Graph Signal Processing

Authors: Behjat, Hamid, Westin, Carl-Fredrik, Aganj, Iman

Source: 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC) Engineering in Medicine & Biology Society (EMBC), 2021 43rd Annual International Conference of the IEEE. :3804-3808 Nov, 2021

Relation: 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC)

Characterization Of Spatial Dynamics Of Fmri Data In White Matter Using Diffusion-Informed White Matter Harmonics

Authors: Behjat, Hamid, Aganj, Iman, Abramian, David, Eklund, Anders, Westin, Carl-Fredrik

Source: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2021 IEEE 18th International Symposium on. :1586-1590 Apr, 2021

Relation: 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI)

DDEvENet: Evidence-based ensemble learning for uncertainty-aware brain parcellation using diffusion MRI

Authors: Li, Chenjun ^{a, 1}, Yang, Dian ^{a, 1}, Yao, Shun ^b, Wang, Shuyue ^c, Wu, Ye ^d, Zhang, Le ^a, Li, Qiannuo ^e, Cho, Kang Ik Kevin ^f, Seitz-Holland, Johanna ^f, Ning, Lipeng ^f, Legarreta, Jon Haitz ^f, Rathi, Yogesh ^f, Westin, Carl-Fredrik ^f, O’Donnell, Lauren J. ^f, Sochen, Nir A. ^g, Pasternak, Ofer ^{f, 2}, Zhang, Fan ^{a, ⁎, 2}

Source: In Computerized Medical Imaging and Graphics March 2025 120

TractoFormer: A Novel Fiber-level Whole Brain Tractography Analysis Framework Using Spectral Embedding and Vision Transformers

Authors: Zhang, Fan, Xue, Tengfei, Cai, Weidong, Rathi, Yogesh, Westin, Carl-Fredrik, O'Donnell, Lauren J

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2207.02327

Probing restricted diffusion and exchange using free gradient waveforms: validation by numerical simulations

Authors: Chakwizira, Arthur, Westin, Carl-Fredrik, Brabec, Jan, Lasič, Samo, Knutsson, Linda, Szczepankiewicz, Filip, Nilsson, Markus

Subject Terms: Physics - Medical Physics

Access URL: http://arxiv.org/abs/2111.11094

SNR-enhanced diffusion MRI with structure-preserving low-rank denoising in reproducing kernel Hilbert spaces

Authors: Ramos-Llordén, Gabriel, Vegas-Sánchez-Ferrero, Gonzalo, Liao, Congyu, Westin, Carl-Fredrik, Setsompop, Kawin, Rathi, Yogesh

Subject Terms: Physics - Medical Physics, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/2009.06600

Gradient waveform design for tensor-valued encoding in diffusion MRI

Authors: Szczepankiewicz, Filip, Westin, Carl-Fredrik, Nilsson, Markus

Subject Terms: Physics - Medical Physics

Access URL: http://arxiv.org/abs/2007.07631

Magnetic resonance assessment of effective confinement anisotropy with orientationally-averaged single and double diffusion encoding

Authors: Yolcu, Cem, Herberthson, Magnus, Westin, Carl-Fredrik, Özarslan, Evren

Source: Anisotropy across fields and scales, 203-223, Cham: Springer Nature, 2021

Subject Terms: Physics - Applied Physics, Physics - Medical Physics

Access URL: http://arxiv.org/abs/1912.12760

On the reconstruction accuracy of multi-coil MRI with orthogonal projections

Authors: Breger, Anna, Llorden, Gabriel Ramos, Ferrero, Gonzalo Vegas Sanchez, Hoge, W. Scott, Ehler, Martin, Westin, Carl-Fredrik

Subject Terms: Physics - Medical Physics, Electrical Engineering and Systems Science - Image and Video Processing, Electrical Engineering and Systems Science - Signal Processing, Mathematics - Numerical Analysis

Access URL: http://arxiv.org/abs/1910.13422

Dynamics of position-phase probability density in magnetic resonance

Authors: Yolcu, Cem, Herberthson, Magnus, Westin, Carl-Fredrik, Özarslan, Evren

Subject Terms: Condensed Matter - Statistical Mechanics

Access URL: http://arxiv.org/abs/1906.04046

Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging

Authors: Zhang, Fan, Savadjiev, Peter, Cai, Weidong, Song, Yang, Verma, Ragini, Westin, Carl-Fredrik, O'Donnell, Lauren J.

Source: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on. :564-567 Apr, 2016

Relation: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016)

Maxwell-compensated design of asymmetric gradient waveforms for tensor-valued diffusion encoding

Authors: Szczepankiewicz, Filip, Westin, Carl-Fredrik, Nilsson, Markus

Source: Magn Reson Med 2019;82(4):1424-1437

Subject Terms: Physics - Medical Physics

Access URL: http://arxiv.org/abs/1903.03357

Tensor-valued diffusion MRI in under 3 minutes: An initial survey of microscopic anisotropy and tissue heterogeneity in intracranial tumors

Authors: Nilsson, Markus, Szczepankiewicz, Filip, Brabec, Jan, Taylor, Marie, Westin, Carl-Fredrik, Golby, Alexandra, van Westen, Danielle, Sundgren, Pia C

Subject Terms: Physics - Medical Physics

Access URL: http://arxiv.org/abs/1902.09986