Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

Authors: Ellrott, Kyle ^{1, 25, ∗}, Wong, Christopher K. ^{2, 25}, Yau, Christina ^{3, 4, 25}, Castro, Mauro A.A. ^{5, 25}, Lee, Jordan A. ^{1, 25}, Karlberg, Brian J. ^{1, 25}, Grewal, Jasleen K. ^{6, 19, 25}, Lagani, Vincenzo ^{7, 8, 20, 25}, Tercan, Bahar ^{9, 25}, Friedl, Verena ², Hinoue, Toshinori ¹⁰, Uzunangelov, Vladislav ^{2, 21}, Westlake, Lindsay ^{11, 12}, Loinaz, Xavier ¹¹, Felau, Ina ¹³, Wang, Peggy I. ¹³, Kemal, Anab ¹³, Caesar-Johnson, Samantha J. ¹³, Shmulevich, Ilya ⁹, Lazar, Alexander J. ¹⁴, Tsamardinos, Ioannis ^{7, 15, 16}, Hoadley, Katherine A. ¹⁷, Robertson, A. Gordon ^{6, 22}, Knijnenburg, Theo A. ^{9, 23}, Benz, Christopher C. ⁴, Stuart, Joshua M. ², Zenklusen, Jean C. ¹³, Cherniack, Andrew D. ^{11, 12, 18, 26, ∗∗}, Laird, Peter W. ^{10, 26, 27, ∗∗∗}

Source: In Cancer Cell 10 February 2025 43(2):195-212

Simulating the Impact of Sugar-Sweetened Beverage Warning Labels in Three Cities

Authors: Lee, Bruce Y., Ferguson, Marie C., Hertenstein, Daniel L., Adam, Atif, Zenkov, Eli, Wang, Peggy I., Wong, Michelle S., Gittelsohn, Joel, Mui, Yeeli, Brown, Shawn T.

Source: In American Journal of Preventive Medicine February 2018 54(2):197-204

Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning

Authors: Lau, Mei Sheng, Schwartz, Matthew G., Kundu, Sharmistha, Savol, Andrej J., Wang, Peggy I., Marr, Sharon K., Grau, Daniel J., Schorderet, Patrick, Sadreyev, Ruslan I., Tabin, Clifford J., Kingston, Robert E.

Source: Science, 2017 Mar 01. 355(6329), 1081-1084.

Access URL: https://www.jstor.org/stable/24918507

Modeling The Economic And Health Impact Of Increasing Children's Physical Activity In The United States

Authors: Lee, Bruce Y., Adam, Atif, Zenkov, Eli, Hertenstein, Daniel, Ferguson, Marie C., Wang, Peggy I., Wong, Michelle S., Wedlock, Patrick, Nyathi, Sindiso, Gittelsohn, Joel

Source: Health affairs. 36(5):902-908

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN611182260&indx=1&recIds=ETOCRN611182260

The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites

Authors: West, Jason A., Davis, Christopher P., Sunwoo, Hongjae, Simon, Matthew D., Sadreyev, Ruslan I., Wang, Peggy I., Tolstorukov, Michael Y., Kingston, Robert E.

Source: In Molecular Cell 4 September 2014 55(5):791-802

A Census of Human Soluble Protein Complexes

Authors: Havugimana, Pierre C., Hart, G. Traver, Nepusz, Tamás, Yang, Haixuan, Turinsky, Andrei L., Li, Zhihua, Wang, Peggy I., Boutz, Daniel R., Fong, Vincent, Phanse, Sadhna, Babu, Mohan, Craig, Stephanie A., Hu, Pingzhao, Wan, Cuihong, Vlasblom, James, Dar, Vaqaar-un-Nisa, Bezginov, Alexandr, Clark, Gregory W., Wu, Gabriel C., Wodak, Shoshana J., Tillier, Elisabeth R.M., Paccanaro, Alberto, Marcotte, Edward M., Emili, Andrew

Source: In Cell 31 August 2012 150(5):1068-1081

It's the machine that matters: Predicting gene function and phenotype from protein networks

Authors: Wang, Peggy I., Marcotte, Edward M.

Source: In Journal of Proteomics 10 October 2010 73(11):2277-2289

Genome-wide identification of autosomal genes with allelic imbalance of chromatin state.

Authors: Savol, Andrej J.^1,2, Wang, Peggy I.^1,2, Jeon, Yesu^1,2,3, Colognori, David^1,2,3, Yildirim, Eda^1,2,3, Pinter, Stefan F.^1,2,3, Payer, Bernhard^1,2,3, Lee, Jeannie T.^1,2,3, Sadreyev, Ruslan I.^1,4 sadreyev@molbio.mgh.harvard.edu

Source: PLoS ONE. 8/10/2017, Vol. 12 Issue 8, p1-22. 22p.

Subject Terms: *CHROMATIN, *GENE expression, *X chromosome, *ALLELES, *HISTONES

Genetic Intersection of Tsix and Hedgehog Signaling during the Initiation of X-Chromosome Inactivation

Authors: Del Rosario, Brian C., Del Rosario, Amanda M., Anselmo, Anthony, Wang, Peggy I., Sadreyev, Ruslan I., Lee, Jeannie T.

Source: Developmental cell. 43(3):359-371.e6

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100061155779.0x000001&indx=1&recIds=ETOCvdc_100061155779.0x000001

Prioritizing candidate disease genes by network-based boosting of genome-wide association data.

Authors: Lee, Insuk, Blom, U. Martin, Wang, Peggy I.

Source: Genome Research; July 2011, Vol. 21 Issue 7, p1109-1121, 13p

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Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning.

Authors: Sheng Lau, Mei, Schwartz, Matthew G., Kundu, Sharmistha, Savol, Andrej J., Wang, Peggy I., Marr, Sharon K., Grau, Daniel J., Schorderet, Patrick, Sadreyev, Ruslan I., Tabin, Clifford J., Kingston, Robert E.

Source: Science; 3/10/2017, Vol. 355 Issue 6329, p1081-1084, 4p, 3 Diagrams, 1 Chart

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Percutaneous Ultrasound Gastrostomy: A Novel Device and Bedside Procedure for Gastrostomy Tube Insertion Using Magnetic and Ultrasound Guidance

Authors: Gentry Wilkerson, R., Pustavoitau, Aliaksei, Carolan, Howard, Benner, Nolan, Fischer, Clark, Sheets, Daniel J., Wang, Peggy I., Tropello, Steven

Source: Journal of Medical Devices; June 2019, Vol. 13 Issue: 2 p024501-024501, 1p

Prioritizing candidate disease genes by network-based boosting of genome-wide association data.

Authors: Insuk Lee insuklee@yonsei.ac.kr, Blom, U. Martin, Wang, Peggy I., Jung Eun Shim, Marcotte, Edward M. marcotte@icmb.utexas.edu

Source: Genome Research. Jul2011, Vol. 21 Issue 7, p33-33. 1p.

Subject Terms: *PHENOTYPES, *GENOMES, *GENES, *ALGORITHMS, *CROHN'S disease, *TYPE 2 diabetes