Identification of phenotypic and transcriptomic signatures underpinning maize crown root systems

Authors: Callwood, Jodi B. ^a, Cowling, Craig L. ^a, Townsend, Ella G. ^a, Malik, Shikha ^b, Draves, Melissa A. ^c, Khor, Jasper ^d, Marshall, Jackson P. ^e, Sweers, Heather ^a, Walley, Justin W. ^b, Kelley, Dior R. ^{a, ⁎}

Source: In Plant Phenomics March 2025 7(1)

Phosphorylation Dynamics in a flg22-Induced, G Protein–Dependent Network Reveals the AtRGS1 Phosphatase

Authors: Watkins, Justin M., Montes, Christian, Clark, Natalie M., Song, Gaoyuan, Oliveira, Celio Cabral, Mishra, Bharat, Brachova, Libuse, Seifert, Clara M., Mitchell, Malek S., Yang, Jing, Braga dos Reis, Pedro Augusto, Urano, Daisuke, Muktar, M. Shahid, Walley, Justin W., Jones, Alan M.

Source: In Molecular & Cellular Proteomics February 2024 23(2)

Brassinosteroids modulate autophagy through phosphorylation of RAPTOR1B by the GSK3-like kinase BIN2 in Arabidopsis

Authors: Liao, Ching-Yi, Pu, Yunting, Nolan, Trevor M., Montes, Christian, Guo, Hongqing, Walley, Justin W., Yin, Yanhai, Bassham, Diane C.

Source: Autophagy. 19(4):1293-1310

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100177142814.0x000001&indx=1&recIds=ETOCvdc_100177142814.0x000001

Integration of multi‐omics data reveals interplay between brassinosteroid and Target of Rapamycin Complex signaling in Arabidopsis

Authors: Montes, Christian, Wang, Ping, Liao, Ching‐Yi, Nolan, Trevor M., Song, Gaoyuan, Clark, Natalie M., Elmore, J. Mitch, Guo, Hongqing, Bassham, Diane C., Yin, Yanhai, Walley, Justin W.

Source: New phytologist. 236(3):893-910

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165614419.0x000001&indx=1&recIds=ETOCvdc_100165614419.0x000001

QTeller: a tool for comparative multi-genomic gene expression analysis

Authors: Woodhouse, Margaret R, Sen, Shatabdi, Schott, David, Portwood, John L, Freeling, Michael, Walley, Justin W, Andorf, Carson M, Schnable, James C

Source: Bioinformatics. 38(1):236-242

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100137379806.0x000001&indx=1&recIds=ETOCvdc_100137379806.0x000001

Quantitative proteomics reveals extensive lysine ubiquitination and transcription factor stability states in Arabidopsis.

Authors: Song, Gaoyuan, Montes, Christian, Olatunji, Damilola, Malik, Shikha, Ji, Chonghui, Clark, Natalie M, Pu, Yunting, Kelley, Dior R, Walley, Justin W

Source: Plant Cell; Jan2025, Vol. 37 Issue 1, p1-15, 15p

Advances in functional proteomics to study plant-pathogen interactions

Authors: Elmore, James M., Griffin, Brianna D., Walley, Justin W.

Source: In Current Opinion in Plant Biology October 2021 63

Robotic Assay for Drought (RoAD): an automated phenotyping system for brassinosteroid and drought responses

Authors: Xiang, Lirong, Nolan, Trevor M., Bao, Yin, Elmore, Mitch, Tuel, Taylor, Gai, Jingyao, Shah, Dylan, Wang, Ping, Huser, Nicole M., Hurd, Ashley M., McLaughlin, Sean A., Howell, Stephen H., Walley, Justin W., Yin, Yanhai, Tang, Lie

Source: Plant journal. 107(6):1837-1853

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131520948.0x000001&indx=1&recIds=ETOCvdc_100131520948.0x000001

TurboID‐based proteomic profiling reveals proxitome of ASK1 and CUL1 of the SCF ubiquitin ligase in plants.

Authors: Sun, Fuai, Hamada, Natalie, Montes, Christian, Li, Yuanyuan, Meier, Nathan D., Walley, Justin W., Dinesh‐Kumar, Savithramma P., Shabek, Nitzan

Source: New Phytologist; Dec2024, Vol. 244 Issue 6, p2127-2136, 10p

Subject Terms: PROTEOMICS, LIQUID chromatography-mass spectrometry, AUTOMATIC gain control, SCAFFOLD proteins, FLUORESCENT proteins, UBIQUITIN ligases, OXYGENASES

Single‐cell proteomics differentiates Arabidopsis root cell types.

Authors: Montes, Christian, Zhang, Jingyuan, Nolan, Trevor M., Walley, Justin W.

Source: New Phytologist; Dec2024, Vol. 244 Issue 5, p1750-1759, 10p

Subject Terms: FUNCTIONAL genomics, ARABIDOPSIS thaliana, PROTEOMICS, STEM cells, BIOMARKERS

The Tomato Translational Landscape Revealed by Transcriptome Assembly and Ribosome Profiling

Authors: Wu, Hsin-Yen Larry, Song, Gaoyuan, Walley, Justin W., Hsu, Polly Yingshan

Source: Plant Physiology, 2019 Sep 01. 181(1), 367-380.

Access URL: https://www.jstor.org/stable/26786274

Quantitative Early Auxin Root Proteomics Identifies GAUT10, a Galacturonosyltransferase, as a Novel Regulator of Root Meristem Maintenance

Authors: Pu, Yunting ^‡, Walley, Justin W. ^¶, Shen, Zhouxin ^§, Lang, Michelle G. ^‡, Briggs, Steven P. ^§, Estelle, Mark ^§, Kelley, Dior R. ^{‡, ‖}

Source: In Molecular & Cellular Proteomics June 2019 18(6):1157-1170

Quantitative Profiling of Protein Abundance and Phosphorylation State in Plant Tissues Using Tandem Mass Tags

Authors: Song, Gaoyuan, Montes, Christian, Walley, Justin W.

Source: Methods in molecular biology. 2139:147-156

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN624406343&indx=1&recIds=ETOCRN624406343

Integrated multi-omics framework of the plant response to jasmonic acid

Authors: Zander, Mark, Lewsey, Mathew G., Clark, Natalie M., Yin, Lingling, Bartlett, Anna, Saldierna Guzmán, J. Paola, Hann, Elizabeth, Langford, Amber E., Jow, Bruce, Wise, Aaron, Nery, Joseph R., Chen, Huaming, Bar-Joseph, Ziv, Walley, Justin W., Solano, Roberto, Ecker, Joseph R.

Source: Nature plants. 6(3):290-302

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174465774.0x000001&indx=1&recIds=ETOCvdc_100174465774.0x000001

PLASMODESMATA-LOCATED PROTEIN 6 regulates plasmodesmal function in Arabidopsis vasculature.

Authors: Li, Zhongpeng, Liu, Su-Ling, Montes-Serey, Christian, Walley, Justin W, Aung, Kyaw

Source: Plant Cell; Sep2024, Vol. 36 Issue 9, p3543-3561, 19p

Maize defective kernel5 is a bacterial TamB homologue required for chloroplast envelope biogenesis

Authors: Zhang, Junya, Wu, Shan, Boehlein, Susan K., McCarty, Donald R., Song, Gaoyuan, Walley, Justin W., Myers, Alan, Settles, A. Mark

Source: Journal of cell biology. 218(8):2638-2658

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN621049780&indx=1&recIds=ETOCRN621049780

Comparative Analysis of the Transcriptome and Proteome during Mouse Placental Development

Authors: Abdulghani, Majd, Song, Gaoyuan, Kaur, Haninder, Walley, Justin W., Tuteja, Geetu

Source: Journal of proteome research. 18(5):2088-2099

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN620268810&indx=1&recIds=ETOCRN620268810

Fungal-induced protein hyperacetylation in maize identified by acetylome profiling

Authors: Walley, Justin W., Shen, Zhouxin, McReynolds, Maxwell R., Schmelz, Eric A., Briggs, Steven P.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2018 Jan 01. 115(1), 210-215.

Access URL: https://www.jstor.org/stable/26506315

ZmPILS6 is an auxin efflux carrier required for maize root morphogenesis.

Authors: Cowling, Craig L., Homayouni, Arielle L., Callwood, Jodi B., McReynolds, Maxwell R., Khor, Jasper, Haiyan Ke, Draves, Melissa A., Dehesh, Katayoon, Walley, Justin W., Strader, Lucia C., Kelley, Dior R.

Source: Proceedings of the National Academy of Sciences of the United States of America; 5/28/2024, Vol. 121 Issue 22, p1-8, 23p

Subject Terms: AUXIN, CORN, AGRICULTURE, MORPHOGENESIS, PLANT physiology

Integration of omic networks in a developmental atlas of maize

Authors: Walley, Justin W., Sartor, Ryan C., Shen, Zhouxin, Schmitz, Robert J., Wu, Kevin J., Urich, Mark A., Nery, Joseph R., Smith, Laurie G., Schnable, James C., Ecker, Joseph R., Briggs, Steven P.

Source: Science, 2016 Aug . 353(6301), 814-818.

Access URL: https://www.jstor.org/stable/44711374