Future structural genomics initiatives: an interview with Helen Berman, director of the Protein Data Bank.

Authors: Warr, Wendy A.¹ wendy@warr.com

Source: Journal of Computer-Aided Molecular Design. Oct2008, Vol. 22 Issue 10, p707-710. 4p.

Subject Terms: *BIOINFORMATICS, *INFORMATION science

Geographic Terms: UNITED States

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

People: BERMAN, Helen

PROTEIN FOLDS IN THE ALL-{beta} AND ALL-{alpha} CLASSES.

Authors: Chothia, Cyrus, Hubbard, Tim, Brenner, Steven, Barns, Hugh, Murzin, Alexey

Source: Annual Review of Biophysics & Biomolecular Structure. 1997, Vol. 26 Issue 1, p597. 31p. 13 Black and White Photographs, 2 Diagrams, 1 Graph.

Subject Terms: *PROTEINS

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Bioinformatics: Data's future shock.

Authors: Buckingham, Steve

Source: Nature. 4/15/2004, Vol. 428 Issue 6984, p774-777. 4p.

Subjects: DATABASES, TECHNOLOGICAL innovations, BIOINFORMATICS, INFORMATION storage & retrieval systems, WORLDWIDE Protein Data Bank (Organization)

Geographic Terms: UNITED StatesReport Available

The archiving and dissemination of biological structure data.

Authors: Berman, Helen M¹ berman@rcsb.rutgers.edu, Burley, Stephen K^1,2, Kleywegt, Gerard J³, Markley, John L⁴, Nakamura, Haruki⁵, Velankar, Sameer³

Source: Current Opinion in Structural Biology. Oct2016, Vol. 40, p17-22. 6p.

Subject Terms: *PROTEIN structure, *DIGITAL libraries, *INFORMATION processing, *DATA analysis

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Notes of a protein crystallographer: on the high-resolution structure of the PDB growth rate.

Authors: Abad-Zapatero, Cele¹

Source: Acta Crystallographica: Section D (Wiley-Blackwell). May2012, Vol. 68 Issue 5, p613-617. 5p.

Subject Terms: *ESSAYS, *DATABASES, *NUCLEAR magnetic resonance, *ELECTRON microscopy

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Brownian Dynamics Simulations of the Recognition of the Scorpion Toxin P05 with the Small-conductance Calcium-activated Potassium Channels

Authors: Cui, Meng¹, Shen, Jianhua¹, Briggs, James M.², Fu, Wei¹, Wu, Jingjiang³, Zhang, Yingmin¹, Luo, Xiaomin¹, Chi, Zhengwu³, Ji, Ruyun¹, Jiang, Hualiang¹ hljiang@mail.shcnc.ac.cn, Chen, Kaixian¹

Source: Journal of Molecular Biology. Apr2002, Vol. 318 Issue 2, p417. 12p.

Subject Terms: *POTASSIUM channels, *TOXINS, *MOLECULAR biology

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

PDB Goodies--a web-based GUI to manipulate the Protein Data Bank file.

Authors: Hussain, A.S.Z., Shanthi, V., Sheik, S.S., Jeyakanthan, J., Selvarani, P., Sekar, K.

Source: Acta Crystallographica: Section D (Wiley-Blackwell). Aug2002, Vol. 58 Issue 8, p1385. 2p.

Subject Terms: *GRAPHICAL user interfaces

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Volumetric Filtering, Modeling and Visualization for Nano-Medicine.

Authors: Bajaj, Chandrajit

Source: Computer Graphics Forum. Sep2003, Vol. 22 Issue 3, pxvii-xvii. 1p.

Subject Terms: Three-dimensional imaging, Viruses, Ion channels, X-ray crystallography

Company/Entity: Worldwide Protein Data Bank (Organization)

Protein Structure Initiative: Phase 3 or Phase Out.

Authors: Service, Robert F.

Source: Science. 3/21/2008, Vol. 319 Issue 5870, p1610-1613. 4p. 3 Color Photographs.

Subjects: PROTEINS, GENOMES, PROTEIN research, GENE mapping, AMINO acid sequence, DATABASE design, PROTEIN engineering, DATABASES, WORLDWIDE Protein Data Bank (Organization)

Fluorine in Pharmaceuticals: Looking Beyond Intuition.

Authors: Müller, Klaus, Faeh, Christoph, Diederich, François

Source: Science. 9/28/2007, Vol. 317 Issue 5846, p1881-1886. 7p. 5 Diagrams.

Subjects: FLUORINE, DRUGS, ORGANOFLUORINE compounds, ADSORPTION (Chemistry), LEAD compounds, BIOAVAILABILITY, AMINES, PROTEINS, WORLDWIDE Protein Data Bank (Organization), CAMBRIDGE Crystallographic Data Centre (Company)

Contemporary approaches to protein structure classification.

Authors: Swindells, Mark B., Orengo, Christine A.

Source: BioEssays. Nov98, Vol. 20 Issue 11, p884. 8p.

Subject Terms: *PROTEINS

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

The 'new' PDB.

Source: Nature Structural Biology. Nov98, Vol. 5 Issue 11, p925. 2p.

Subject Terms: *PROTEINS, *DATABASES

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

How precise are reported protein coordinate data?

Authors: Konagurthu, Arun S.¹, Allison, Lloyd¹, Abramson, David^1,2, Stuckey, Peter J.³, Lesk, Arthur M.⁴ aml25@psu.edu

Source: Acta Crystallographica: Section D (Wiley-Blackwell). Mar2014, Vol. 70 Issue 3, p904-906. 3p.

Subject Terms: *PROTEIN analysis, *PRECISION (Information retrieval), *DATA compression, *PROTEIN structure

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Crystallography: Atomic secrets.

Authors: Jones, Nicola

Source: Nature. 1/30/2014, Vol. 505 Issue 7485, p602-603. 2p. 2 Diagrams.

Subjects: X-ray crystallography, LAUE, Max von, 1879-1960, WORLDWIDE Protein Data Bank (Organization), PROTEIN structure, X-ray diffraction

Charge-Transfer Transitions in Protein Circular Dichroism Calculations.

Authors: Oakley, Mark T.¹, Hirst, Jonathan O.¹ Jonathan.hirst@nottingham.ac.uk

Source: Journal of the American Chemical Society. 9/27/2006, Vol. 128 Issue 38, p12414-12415. 2p. 1 Chart, 1 Graph.

Subject Terms: *SYNCHROTRON radiation, *CHARGE transfer, *PROTEINS, *FAR ultraviolet radiation

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Analysis of crystallization data in the Protein Data Bank.

Authors: Kirkwood, Jobie, Hargreaves, David, O'Keefe, Simon, Wilson, Julie

Source: Acta Crystallographica: Section F, Structural Biology Communications. Oct2015, Vol. 71 Issue 10, p1228-1234. 7p.

Subject Terms: *CRYSTALLIZATION, *HYDROGEN-ion concentration

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Netwatch.

Authors: Kaiser, Jocelyn

Source: Science. 7/9/1999, Vol. 285 Issue 5425, p163-163. 1p. 2 Color Photographs.

Subjects: SCIENCE, WEBSITES, JOHNS Hopkins University, WORLDWIDE Protein Data Bank (Organization), BIOMEDICAL engineering, COMPUTER network resources

Geographic Terms: MARYLANDReport Available, BALTIMORE (Md.), UNITED StatesReport Available

Structure of the orthorhombic form of human inosine triphosphate pyrophosphatase.

Authors: Porta, Jason¹, Kolar, Carol¹, Kozmin, Stanislav G.^2,3, Pavlov, Youri I.¹, Borgstahl, Gloria E. O.¹ gborgstahl@unmc.edu

Source: Acta Crystallographica: Section F (Wiley-Blackwell). Nov2006, Vol. 62 Issue 11, p1076-1081. 6p. 1 Color Photograph, 3 Diagrams, 1 Chart.

Subject Terms: *INOSINE, *DNA replication, *TWINNING (Crystallography), *THERMOPHILIC bacteria

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

Hydrophobic Interactions at the Ccap Position of the C-capping Motif of α-Helices

Authors: Ermolenko, Dmitri N.^1,2, Thomas, Susan T.¹, Aurora, Rajeev³, Gronenborn, Angela M.⁴, Makhatadze, George I.¹ makhatadze@psu.edu

Source: Journal of Molecular Biology. Sep2002, Vol. 322 Issue 1, p123. 13p.

Subject Terms: *PROTEINS, *HELIX (Mollusks), *HYDROPHOBIC surfaces

Company/Entity: WORLDWIDE Protein Data Bank (Organization)

De Novo Prediction of Three-dimensional Structures for Major Protein Families

Authors: Bonneau, Richard¹, Strauss, Charlie E. M.², Rohl, Carol A.¹, Chivian, Dylan¹, Bradley, Phillip¹, Malmström, Lars¹, Robertson, Tim¹, Baker, David¹ dabaker@u.washington.edu

Source: Journal of Molecular Biology. Sep2002, Vol. 322 Issue 1, p65. 14p.

Subject Terms: *PROTEINS, *FORECASTING

Company/Entity: WORLDWIDE Protein Data Bank (Organization)