Clinical Validation of the TruSight Oncology 500 Assay for the Detection and Reporting of Pan-Cancer Biomarkers

Authors: Al-Kateb, Hussam ^{∗, ∗}, Knight, Shannon M. ^∗, Sivasankaran, Gopinath ^†, Voss, Jesse S. ^∗, Pitel, Beth A. ^∗, Blommel, Joseph H. ^∗, Jerde, Calvin R. ^∗, Rumilla, Kandeleria M. ^∗, Lee, Jodi L. ^∗, Mattson, Nate R. ^∗, Lauer, Kim P. ^†, Zimmerman Zuckerman, Eric A. ^∗, Hofich, Chris D. ^∗, Milosevic, Dragana ^∗, Thompson, Joe ^∗, Tillmans, Lori S. ^∗, Stai, Tony T. ^∗, Dasari, Surendra ^†, Pryzbylski, Amber L. ^∗, Mullineaux, Lisa G. ^∗, Ida, Cris M. ^∗, Jenkins, Robert B. ^∗, Gupta, Sounak ^∗, Kipp, Benjamin R. ^∗, Halling, Kevin C. ^{∗, ∗}

Source: In The Journal of Molecular Diagnostics January 2025

SARCP, a Clinical Next-Generation Sequencing Assay for the Detection of Gene Fusions in Sarcomas: A Description of the First 652 Cases

Authors: Atiq, Mazen A., Balan, Jagadheshwar, Blackburn, Patrick R., Gross, John M., Voss, Jesse S., Jin, Long, Fadra, Numrah, Davila, Jaime I., Pitel, Beth A., Siqueira Parrilha Terra, Simone Barreto, Minn, Kay T., Jackson, Rory A., Hofich, Christopher D., Willkomm, Kurt S., Peterson, Brenda J., Clausen, Sydney N., Rumilla, Kandelaria M., Gupta, Sounak, Lo, Ying-Chun, Ida, Cris M., Molligan, Jeremy F., Thangaiah, Judith Jebastin, Petersen, Matthew J., Sukov, William R., Guo, Ruifeng, Giannini, Caterina, Schoolmeester, J. Kenneth, II, Fritchie, Karen, Inwards, Carrie Y., Folpe, Andrew L., Oliveira, Andre M., Torres-Mora, Jorge, Kipp, Benjamin R., Halling, Kevin C.

Source: In The Journal of Molecular Diagnostics January 2025 27(1):74-95

RNA-Seq Reveals Differences in Expressed Tumor Mutation Burden in Colorectal and Endometrial Cancers with and without Defective DNA-Mismatch Repair

Authors: DiGuardo, Margaret A., Davila, Jaime I., Jackson, Rory A., Nair, Asha A., Fadra, Numrah, Minn, Kay T., Atiq, Mazen A., Zarei, Shabnam, Blommel, Joseph H., Knight, Shannon M., Jen, Jin, Eckloff, Bruce W., Voss, Jesse S., Rumilla, Kandelaria M., Kerr, Sarah E., Lam-Himlin, Dora M., Bellizzi, Andrew M., Graham, Rondell P., Kipp, Benjamin R., Jenkins, Robert B., Halling, Kevin C.

Source: In The Journal of Molecular Diagnostics May 2021 23(5):555-564

Chromosomal Junction Detection from Whole-Genome Sequencing on Formalin-Fixed, Paraffin-Embedded Tumors

Authors: Murphy, Stephen, Smadbeck, James, Eckloff, Bruce, Lee, Yean, Johnson, Sarah, Karagouga, Giannoula, Serla, Vishnu, Sharma, Anurag, Sikkink, Robert, Voss, Jesse, Harris, Faye, Kline, Janet Schaefer, Kosari, Farhad, Feldman, Andrew, Wieben, Eric, Aubry, Marie Christine, Kipp, Benjamin, Jen, Jin, Cheville, John, Vasmatzis, George

Source: Journal of molecular diagnostics. 23(4):375-388

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100134157083.0x000001&indx=1&recIds=ETOCvdc_100134157083.0x000001

Secondary renal neoplasia following chemotherapy or radiation in pediatric patients

Authors: Gupta, Sounak, Vanderbilt, Chad M., Leibovich, Bradley C., Herrera-Hernandez, Loren, Raghunathan, Aditya, Sukov, William R., Voss, Jesse S., Barr Fritcher, Emily G., Reed, Katelyn A., Lohse, Christine M., Reuter, Victor E., Jimenez, Rafael E., Thompson, R. Houston, Cheville, John C.

Source: In Human Pathology September 2020 103:1-13

Combining copy number, methylation markers, and mutations as a panel for endometrial cancer detection via intravaginal tampon collection

Authors: Sangtani, Ajleeta, Wang, Chen, Weaver, Amy, Hoppman, Nicole L., Kerr, Sarah E., Abyzov, Alexej, Shridhar, Viji, Staub, Julie, Kocher, Jean-Pierre A., Voss, Jesse S., Podratz, Karl C., Wentzensen, Nicolas, Kisiel, John B., Sherman, Mark E., Bakkum-Gamez, Jamie N.

Source: In Gynecologic Oncology February 2020 156(2):387-392

Recurrent MSCE116K mutations in ALK-negative anaplastic large cell lymphoma

Authors: Luchtel, Rebecca A., Zimmermann, Michael T. ^*, Hu, Guangzhen, Dasari, Surendra, Jiang, Manli, Oishi, Naoki, Jacobs, Hailey K., Zeng, Yu, Hundal, Tanya, Rech, Karen L., Ketterling, Rhett P., Lee, Jeong-Heon, Eckloff, Bruce W., Yan, Huihuang, Gaonkar, Krutika S., Tian, Shulan, Ye, Zhenqing, Kadin, Marshall E., Sidhu, Jagmohan, Jiang, Liuyan, Voss, Jesse, Link, Brian K., Syrbu, Sergei I., Facchetti, Fabio, Bennani, N. Nora, Slager, Susan L., Ordog, Tamas, Kocher, Jean-Pierre, Cerhan, James R., Ansell, Stephen M., Feldman, Andrew L. ^*

Source: In Blood 27 June 2019 133(26):2776-2789

Clinicopathologic, Immunohistochemical, and Molecular Characteristics of Ovarian Serous Carcinoma With Mixed Morphologic Features of High-grade and Low-grade Serous Carcinoma

Authors: Zarei, Shabnam, Wang, Yan, Jenkins, Sarah M., Voss, Jesse S., Kerr, Sarah E., Bell, Debra A.

Source: American journal of surgical pathology. 44(3):316-328

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100098225734.0x000001&indx=1&recIds=ETOCvdc_100098225734.0x000001

Evaluating User Experience and DNA Yield from Self-Collection Devices.

Authors: Blommel, Joseph H., Roforth, Matthew M., Jerde, Calvin R., Karsten, Carley A., Bridgeman, Amber R., Voss, Jesse S., Boccuto, Luigi, Ivankovi, Diana S., Sarasua, Sara M., Kipp, Benjamin R., Murphy, Stephen J.

Source: Journal of Applied Laboratory Medicine; Jul2024, Vol. 9 Issue 4, p704-715, 12p

Subject Terms: COVID-19 pandemic, USER experience, DNA, SALIVA, PATIENT care

Analysis of Cell-Free DNA to Assess Risk of Tumoremia Following Endoscopic Ultrasound Fine-Needle Aspiration of Pancreatic Adenocarcinomas

Authors: Levy, Michael J., Kipp, Benjamin R., Milosevic, Dragana, Schneider, Amber R., Voss, Jesse S., Avula, Rajeswari, Kerr, Sarah E., Henry, Michael R., Highsmith, Edward, Jr., Liu, Minetta C., Gleeson, Ferga C.

Source: In Clinical Gastroenterology and Hepatology October 2018 16(10):1632-1640

Development and Verification of an RNA Sequencing (RNA-Seq) Assay for the Detection of Gene Fusions in Tumors

Authors: Winters, Jennifer L., Davila, Jaime I., McDonald, Amber M., Nair, Asha A., Fadra, Numrah, Wehrs, Rebecca N., Thomas, Brittany C., Balcom, Jessica R., Jin, Long, Wu, Xianglin, Voss, Jesse S., Klee, Eric W., Oliver, Gavin R., Graham, Rondell P., Neff, Jadee L., Rumilla, Kandelaria M., Aypar, Umut, Kipp, Benjamin R., Jenkins, Robert B., Jen, Jin, Halling, Kevin C.

Source: In The Journal of Molecular Diagnostics July 2018 20(4):495-511

Pulmonary invasive mucinous adenocarcinoma and mixed invasive mucinous/nonmucinous adenocarcinoma—a clinicopathological and molecular genetic study with survival analysis

Authors: Boland, Jennifer M., Maleszewski, Joseph J., Wampfler, Jason A., Voss, Jesse S., Kipp, Benjamin R., Yang, Ping, Yi, Eunhee S.

Source: In Human Pathology January 2018 71:8-19

IMPACT OF ARTIFICIAL INTELLIGENCE-DRIVEN WHOLE SLIDE IMAGE SCORING AND PRIORITIZATION ON USER EFFICIENCY DURING CYTOLOGIC EVALUATION OF BILIARY STRICTURES

Authors: Marya, Neil, Hartley, Christopher, Powers, Patrick, Bois, Melanie, Kerr, Sarah, Thangaiah, Judith Jebastin, Norton, Daniel, Gleeson, Ferga, Francis, Mary Kittle, Passow, Marie, Dayyeh, Barham Abu, Bofill-Garcia, Aliana, Chandrasekhara, Vinay, Gores, Gregory, Kipp, Benjamin, Law, Ryan, Martin, John, Petersen, Bret, Voss, Jesse, Zieman, Angela, Roberts, Lewis, Bridgeman, Amber, Stai, Anthony, Storm, Andrew, Vargas, Eric, Graham, Rondell, Levy, Michael

Source: Gastrointestinal endoscopy. 97(6):AB741-AB742

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100192691158.0x000001&indx=1&recIds=ETOCvdc_100192691158.0x000001

Molecular profiling of long-term IDH-wildtype glioblastoma survivors

Authors: Burgenske, Danielle M, Yang, Jie, Decker, Paul A, Kollmeyer, Thomas M, Kosel, Matthew L, Mladek, Ann C, Caron, Alissa A, Vaubel, Rachael A, Gupta, Shiv K, Kitange, Gaspar J, Sicotte, Hugues, Youland, Ryan S, Remonde, Dioval, Voss, Jesse S, Fritcher, Emily G Barr, Kolsky, Kathryn L, Ida, Cristiane M, Meyer, Fredric B, Lachance, Daniel H, Parney, Ian J, Kipp, Benjamin R, Giannini, Caterina, Sulman, Erik P, Jenkins, Robert B, Eckel-Passow, Jeanette E, Sarkaria, Jann N

Source: Neuro-oncology. 21(11):1458-1469

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100100533045.0x000001&indx=1&recIds=ETOCvdc_100100533045.0x000001

Clinicopathological, immunophenotypic and genetic studies of mediastinal paragangliomas†

Authors: Hsu, Ying-Han R, Torres-Mora, Jorge, Kipp, Benjamin R, Sukov, William R, Jenkins, Sarah M, Voss, Jesse S, Barr Fritcher, Emily G, Schaff, Hartzell V, Cassivi, Stephen D, Roden, Anja C

Source: European journal of cardio-thoracic surgery. 56(5):867-875

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100100572689.0x000001&indx=1&recIds=ETOCvdc_100100572689.0x000001

Genomic rearrangements in sporadic lymphangioleiomyomatosis: an evolving genetic story

Authors: Murphy, Stephen J, Terra, Simone B, Harris, Faye R, Nasir, Aqsa, Voss, Jesse S, Smadbeck, James B, Johnson, Sarah H, Serla, Vishnu, Ryu, Jay H, Yi, Eunhee S, Kipp, Benjamin R, Vasmatzis, George, Carmona, Eva M

Source: In Modern Pathology September 2017 30(9):1223-1233

Molecular cytology genotyping of primary and metastatic GI stromal tumors by using a custom two-gene targeted next-generation sequencing panel with therapeutic intent

Authors: Gleeson, Ferga C., Kerr, Sarah E., Kipp, Benjamin R., Voss, Jesse S., Minot, Douglas M., Tu, Zheng Jin, Henry, Michael R., Vasmatzis, George, Cheville, John C., Lazaridis, Konstantinos N., Levy, Michael J.

Source: In Gastrointestinal Endoscopy December 2016 84(6):950-958

An Optimized Set of Fluorescence In Situ Hybridization Probes for Detection of Pancreatobiliary Tract Cancer in Cytology Brush Samples

Authors: Barr Fritcher, Emily G., Voss, Jesse S., Brankley, Shannon M., Campion, Michael B., Jenkins, Sarah M., Keeney, Matthew E., Henry, Michael R., Kerr, Sarah M., Chaiteerakij, Roongruedee, Pestova, Ekaterina V., Clayton, Amy C., Zhang, Jun, Roberts, Lewis R., Gores, Gregory J., Halling, Kevin C., Kipp, Benjamin R.

Source: In Gastroenterology December 2015 149(7):1813-1824

Frequency of mitogen-activated protein kinase and phosphoinositide 3-kinase signaling pathway pathogenic alterations in EUS-FNA sampled malignant lymph nodes in rectal cancer with theranostic potential

Authors: Gleeson, Ferga C., Kipp, Benjamin R., Voss, Jesse S., Campion, Michael B., Minot, Douglas M., Tu, Zheng J., Klee, Eric W., Graham, Rondell P., Lazaridis, Konstantinos N., Henry, Michael R., Levy, Michael J.

Source: In Gastrointestinal Endoscopy September 2015 82(3):550-556

Detection of endometrial cancer via molecular analysis of DNA collected with vaginal tampons

Authors: Bakkum-Gamez, Jamie N., Wentzensen, Nicolas, Maurer, Matthew J., Hawthorne, Kieran M., Voss, Jesse S., Kroneman, Trynda N., Famuyide, Abimbola O., Clayton, Amy C., Halling, Kevin C., Kerr, Sarah E., Cliby, William A., Dowdy, Sean C., Kipp, Benjamin R., Mariani, Andrea, Oberg, Ann L., Podratz, Karl C., Shridhar, Viji, Sherman, Mark E.

Source: In Gynecologic Oncology April 2015 137(1):14-22