The Human Pathology Atlas for deciphering the prognostic features of human cancers

Authors: Yuan, Meng ^a, Zhang, Cheng ^a, Von Feilitzen, Kalle ^a, Zwahlen, Martin ^a, Shi, Mengnan ^a, Li, Xiangyu ^b, Yang, Hong ^a, Song, Xiya ^a, Turkez, Hasan ^c, Uhlén, Mathias ^a, Mardinoglu, Adil ^{a, d, ∗}

Source: In eBioMedicine January 2025 111

The neuropeptide landscape of human prefrontal cortex

Authors: Zhong, Wen, Barde, Swapnali, Mitsios, Nicholas, Adori, Csaba, Oksvold, Per, von Feilitzen, Kalle, O’Leary, Liam, Csiba, László, Hortobágyi, Tibor, Szocsics, Péter, Mechawar, Naguib, Maglóczky, Zsófia, Renner, Éva, Palkovits, Miklós, Uhlén, Mathias, Mulder, Jan, Hökfelt, Tomas

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Aug . 119(33), 1-12.

Access URL: https://www.jstor.org/stable/27206912

A human adipose tissue cell-type transcriptome atlas

Authors: Norreen-Thorsen, Marthe, Struck, Eike Christopher, Öling, Sofia, Zwahlen, Martin, Von Feilitzen, Kalle, Odeberg, Jacob, Lindskog, Cecilia, Pontén, Fredrik, Uhlén, Mathias, Dusart, Philip James, Butler, Lynn Marie

Source: In Cell Reports 12 July 2022 40(2)

A genome-wide transcriptomic analysis of protein-coding genes in human blood cells

Authors: Uhlen, Mathias, Karlsson, Max J., Zhong, Wen, Tebani, Abdellah, Pou, Christian, Mikes, Jaromir, Lakshmikanth, Tadepally, Forsström, Björn, Edfors, Fredrik, Odeberg, Jacob, Mardinoglu, Adil, Zhang, Cheng, von Feilitzen, Kalle, Mulder, Jan, Sjöstedt, Evelina, Hober, Andreas, Oksvold, Per, Zwahlen, Martin, Ponten, Fredrik, Lindskog, Cecilia, Sivertsson, Åsa, Fagerberg, Linn, Brodin, Petter

Source: Science, 2019 Dec . 366(6472), 1471-1471.

Access URL: https://www.jstor.org/stable/26871390

Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins

Authors: Sivertsson, Åsa, Lindström, Emil, Oksvold, Per, Katona, Borbala, Hikmet, Feria, Vuu, Jimmy, Gustavsson, Jonas, Sjöstedt, Evelina, von Feilitzen, Kalle, Kampf, Caroline

Source: Journal of proteome research. 19(12):4766-4781

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN625708343&indx=1&recIds=ETOCRN625708343

High throughput generation of a resource of the human secretome in mammalian cells

Authors: Tegel, Hanna, Dannemeyer, Melanie, Kanje, Sara, Sivertsson, Åsa, Berling, Anna, Svensson, Anne-Sophie, Hober, Andreas, Enstedt, Henric, Volk, Anna-Luisa, Lundqvist, Magnus, Moradi, Mona, Afshari, Delaram, Ekblad, Siri, Xu, LanLan, Westin, Malin, Bidad, Faranak, Schiavone, Lovisa Holmberg, Davies, Rick, Mayr, Lorenz M., Knight, Sinead, Göpel, Sven O., Voldborg, Björn G., Edfors, Fredrik, Forsström, Björn, von Feilitzen, Kalle, Zwahlen, Martin, Rockberg, Johan, Takanen, Jenny Ottosson, Uhlén, Mathias, Hober, Sophia

Source: New biotechnology. 58:45-54

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100116063233.0x000001&indx=1&recIds=ETOCvdc_100116063233.0x000001

A pathology atlas of the human cancer transcriptome

Authors: Uhlen, Mathias, Zhang, Cheng, Lee, Sunjae, Sjöstedt, Evelina, Fagerberg, Linn, Bidkhori, Gholamreza, Benfeitas, Rui, Arif, Muhammad, Liu, Zhengtao, Edfors, Fredrik, Sanli, Kemal, von Feilitzen, Kalle, Oksvold, Per, Lundberg, Emma, Hober, Sophia, Nilsson, Peter, Mattsson, Johanna, Schwenk, Jochen M., Brunnström, Hans, Glimelius, Bengt, Sjöblom, Tobias, Edqvist, Per-Henrik, Djureinovic, Dijana, Micke, Patrick, Lindskog, Cecilia, Mardinoglu, Adil, Ponten, Fredrik

Source: Science, 2017 Aug . 357(6352), 660-660.

Access URL: https://www.jstor.org/stable/26399644

A subcellular map of the human proteome

Authors: Thul, Peter J., Åkesson, Lovisa, Wiking, Mikaela, Mahdessian, Diana, Geladaki, Aikaterini, Blal, Hammou Ait, Alm, Tove, Asplund, Anna, Björk, Lars, Breckels, Lisa M., Bäckström, Anna, Danielsson, Frida, Fagerberg, Linn, Fall, Jenny, Gatto, Laurent, Gnann, Christian, Hober, Sophia, Hjelmare, Martin, Johansson, Fredric, Lee, Sunjae, Lindskog, Cecilia, Mulder, Jan, Mulvey, Claire M., Nilsson, Peter, Oksvold, Per, Rockberg, Johan, Schutten, Rutger, Schwenk, Jochen M., Sivertsson, Åsa, Sjöstedt, Evelina, Skogs, Marie, Stadler, Charlotte, Sullivan, Devin P., Tegel, Hanna, Winsnes, Casper, Zhang, Cheng, Zwahlen, Martin, Mardinoglu, Adil, Pontén, Fredrik, von Feilitzen, Kalle, Lilley, Kathryn S., Uhlén, Mathias, Lundberg, Emma

Source: Science, 2017 May . 356(6340), 820-820.

Access URL: https://www.jstor.org/stable/26399089

Tissue-based map of the human proteome

Authors: Uhlén, Mathias, Fagerberg, Linn, Hallström, Björn M., Lindskog, Cecilia, Oksvold, Per, Mardinoglu, Adil, Sivertsson, Åsa, Kampf, Caroline, Sjöstedt, Evelina, Asplund, Anna, Olsson, IngMarie, Edlund, Karolina, Lundberg, Emma, Navani, Sanjay, Szigyarto, Cristina Al-Khalili, Odeberg, Jacob, Djureinovic, Dijana, Takanen, Jenny Ottosson, Hober, Sophia, Alm, Tove, Edqvist, Per-Henrik, Berling, Holger, Tegel, Hanna, Mulder, Jan, Rockberg, Johan, Nilsson, Peter, Schwenk, Jochen M., Hamsten, Marica, von Feilitzen, Kalle, Forsberg, Mattias, Persson, Lukas, Johansson, Fredric, Zwahlen, Martin, von Heijne, Gunnar, Nielsen, Jens, Pontén, Fredrik

Source: Science, 2015 Jan . 347(6220), 394-394.

Access URL: http://www.jstor.org/stable/24746053

Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics

Authors: Fagerberg, Linn ^‡, Hallström, Björn M. ^‡, Oksvold, Per ^‡, Kampf, Caroline ^§, Djureinovic, Dijana ^§, Odeberg, Jacob ^‡, Habuka, Masato ^‡, Tahmasebpoor, Simin ^§, Danielsson, Angelika ^§, Edlund, Karolina ^§, Asplund, Anna ^§, Sjöstedt, Evelina ^§, Lundberg, Emma ^‡, Szigyarto, Cristina Al-Khalili ^‡, Skogs, Marie ^‡, Takanen, Jenny Ottosson ^‖, Berling, Holger ^‖, Tegel, Hanna ^‖, Mulder, Jan ^‡‡, Nilsson, Peter ^‡, Schwenk, Jochen M. ^‡, Lindskog, Cecilia ^§, Danielsson, Frida ^‡, Mardinoglu, Adil ^¶, Sivertsson, Åsa ^‡, von Feilitzen, Kalle ^‖, Forsberg, Mattias ^‡, Zwahlen, Martin ^‡, Olsson, IngMarie ^§, Navani, Sanjay ^**, Huss, Mikael ^‡, Nielsen, Jens ^{‡, §, ¶}, Ponten, Fredrik ^§, Uhlén, Mathias ^{‡, ‖, ¶¶}

Source: In Molecular & Cellular Proteomics February 2014 13(2):397-406

Global compositional and functional states of the human gut microbiome in health and disease

Authors: Lee, Sunjae, Portlock, Theo, Le Chatelier, Emmanuelle, Garcia-Guevara, Fernando, Clasen, Frederick, Oñate, Florian Plaza, Pons, Nicolas, Begum, Neelu, Harzandi, Azadeh, Proffitt, Ceri, Rosario, Dorines, Vaga, Stefania, Park, Junseok, von Feilitzen, Kalle, Johansson, Fredric, Zhang, Cheng, Edwards, Lindsey A., Lombard, Vincent, Gauthier, Franck, Steves, Claire J., Gomez-Cabrero, David, Henrissat, Bernard, Lee, Doheon, Engstrand, Lars, Shawcross, Debbie L., Proctor, Gordon, Almeida, Mathieu, Nielsen, Jens, Mardinoglu, Adil, Moyes, David L., Ehrlich, Stanislav Dusko, Uhlen, Mathias, Shoaie, Saeed

Source: Genome Research; 2024, Vol. 34 Issue: 6 p967-978, 12p

Integration of molecular profiles in a longitudinal wellness profiling cohort

Authors: Tebani, Abdellah, Gummesson, Anders, Zhong, Wen, Koistinen, Ina Schuppe, Lakshmikanth, Tadepally, Olsson, Lisa M., Boulund, Fredrik, Neiman, Maja, Stenlund, Hans, Hellström, Cecilia, Karlsson, Max J., Arif, Muhammad, Dodig-Crnković, Tea, Mardinoglu, Adil, Lee, Sunjae, Zhang, Cheng, Chen, Yang, Olin, Axel, Mikes, Jaromir, Danielsson, Hanna, von Feilitzen, Kalle, Jansson, Per-Anders, Angerås, Oskar, Huss, Mikael, Kjellqvist, Sanela, Odeberg, Jacob, Edfors, Fredrik, Tremaroli, Valentina, Forsström, Björn, Schwenk, Jochen M., Nilsson, Peter, Moritz, Thomas, Bäckhed, Fredrik, Engstrand, Lars, Brodin, Petter, Bergström, Göran, Uhlen, Mathias, Fagerberg, Linn

Source: Nature communications. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174520685.0x000001&indx=1&recIds=ETOCvdc_100174520685.0x000001

Systematic transcriptional analysis of human cell lines for gene expression landscape and tumor representation.

Authors: Jin, Han, Zhang, Cheng, Zwahlen, Martin, von Feilitzen, Kalle, Karlsson, Max, Shi, Mengnan, Yuan, Meng, Song, Xiya, Li, Xiangyu, Yang, Hong, Turkez, Hasan, Fagerberg, Linn, Uhlén, Mathias, Mardinoglu, Adil

Source: Nature Communications; 9/5/2023, Vol. 14 Issue 1, p1-15, 15p

Subject Terms: GENE expression, HUMAN biology, CELL analysis, HUMAN genes, DRUG development

Next generation pan-cancer blood proteome profiling using proximity extension assay.

Authors: Álvez, María Bueno, Edfors, Fredrik, von Feilitzen, Kalle, Zwahlen, Martin, Mardinoglu, Adil, Edqvist, Per-Henrik, Sjöblom, Tobias, Lundin, Emma, Rameika, Natallia, Enblad, Gunilla, Lindman, Henrik, Höglund, Martin, Hesselager, Göran, Stålberg, Karin, Enblad, Malin, Simonson, Oscar E., Häggman, Michael, Axelsson, Tomas, Åberg, Mikael, Nordlund, Jessica

Source: Nature Communications; 7/19/2023, Vol. 14 Issue 1, p1-13, 13p

Subject Terms: MACHINE learning, BLOOD proteins, TUMOR classification, PROTEOMICS, PLASMA production

Enhanced validation of antibodies for research applications

Authors: Edfors, Fredrik, Hober, Andreas, Linderbäck, Klas, Maddalo, Gianluca, Azimi, Alireza, Sivertsson, Åsa, Tegel, Hanna, Hober, Sophia, Szigyarto, Cristina Al-Khalili, Fagerberg, Linn, von Feilitzen, Kalle, Oksvold, Per, Lindskog, Cecilia, Forsström, Björn, Uhlen, Mathias

Source: Nature communications. 9(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129877710.0x000001&indx=1&recIds=ETOCvdc_100129877710.0x000001

The neuropeptide landscape of human prefrontal cortex.

Authors: Wen Zhong, Barde, Swapnali, Mitsios, Nicholas, Adori, Csaba, Oksvold, Per, von Feilitzen, Kalle, O'Leary, Liam, Csiba, László, Hortobágyi, Tibor, Szocsics, Péter, Mechawar, Naguib, Maglóczky, Zsófia, Renner, Éva, Palkovits, Miklós, Uhlén, Mathias, Mulder, Jan, Hökfelt, Tomas

Source: Proceedings of the National Academy of Sciences of the United States of America; 8/16/2022, Vol. 119 Issue 33, p1-12, 54p

Subject Terms: PREFRONTAL cortex, PEPTIDE hormones, PEPTIDES, CINGULATE cortex, SOMATOSTATIN receptors

Genome-wide annotation of protein-coding genes in pig.

Authors: Karlsson, Max, Sjöstedt, Evelina, Oksvold, Per, Sivertsson, Åsa, Huang, Jinrong, Álvez, María Bueno, Arif, Muhammad, Li, Xiangyu, Lin, Lin, Yu, Jiaying, Ma, Tao, Xu, Fengping, Han, Peng, Jiang, Hui, Mardinoglu, Adil, Zhang, Cheng, von Feilitzen, Kalle, Xu, Xun, Wang, Jian, Yang, Huanming

Source: BMC Biology; 1/25/2022, Vol. 20 Issue 1, p1-18, 18p

Subject Terms: SWINE, GENES, GENE expression, ANNOTATIONS, GENE expression profiling, GENE clusters

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The human secretome

Authors: Uhlén, Mathias, Karlsson, Max J., Hober, Andreas, Svensson, Anne-Sophie, Scheffel, Julia, Kotol, David, Zhong, Wen, Tebani, Abdellah, Strandberg, Linnéa, Edfors, Fredrik, Sjöstedt, Evelina, Mulder, Jan, Mardinoglu, Adil, Berling, Anna, Ekblad, Siri, Dannemeyer, Melanie, Kanje, Sara, Rockberg, Johan, Lundqvist, Magnus, Malm, Magdalena, Volk, Anna-Luisa, Nilsson, Peter, Månberg, Anna, Dodig-Crnkovic, Tea, Pin, Elisa, Zwahlen, Martin, Oksvold, Per, von Feilitzen, Kalle, Häussler, Ragna S., Hong, Mun-Gwan, Lindskog, Cecilia, Ponten, Fredrik, Katona, Borbala, Vuu, Jimmy, Lindström, Emil, Nielsen, Jens, Robinson, Jonathan, Ayoglu, Burcu, Mahdessian, Diana, Sullivan, Devin, Thul, Peter, Danielsson, Frida, Stadler, Charlotte, Lundberg, Emma, Bergström, Göran, Gummesson, Anders, Voldborg, Bjørn G., Tegel, Hanna, Hober, Sophia, Forsström, Björn, Schwenk, Jochen M., Fagerberg, Linn, Sivertsson, Åsa

Source: Science Signaling; November 2019, Vol. 12 Issue: 609