Longitudinal profiles of the fecal metabolome during the first 2 years of life

Authors: Elizabeth A. Holzhausen, Natalie Shen, Bridget Chalifour, ViLinh Tran, Zhenjiang Li, Jeremy A. Sarnat, Howard H. Chang, Dean P. Jones, Michael I. Goran, Donghai Liang, Tanya L. Alderete

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-12 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/c1a147d4df544f02b94276482c85bd03

Metabolomics profiling in acute liver transplant rejection in a pediatric population

Authors: Jennifer K. Frediani, Yara S. Beyh, Nitika Gupta, Adrianna L. Westbrook, Rebecca Cleeton, Maria Cordero, Albert Hernandez, ViLinh Tran, Dean P. Jones, Miriam B. Vos

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-10 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/f81428dec5d34e0ab2fa8c75d82d73b4

MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques

Authors: Jeremy D. DeBarry, Mustafa V. Nural, Suman B. Pakala, Vishal Nayak, Susanne Warrenfeltz, Jay Humphrey, Stacey A. Lapp, Monica Cabrera-Mora, Cristiana F. A. Brito, Jianlin Jiang, Celia L. Saney, Allison Hankus, Hannah M. Stealey, Megan B. DeBarry, Nicolas Lackman, Noah Legall, Kevin Lee, Yan Tang, Anuj Gupta, Elizabeth D. Trippe, Robert R. Bridger, Daniel Brent Weatherly, Mariko S. Peterson, Xuntian Jiang, ViLinh Tran, Karan Uppal, Luis L. Fonseca, Chester J. Joyner, Ebru Karpuzoglu, Regina J. Cordy, Esmeralda V. S. Meyer, Lance L. Wells, Daniel S. Ory, F. Eun-Hyung Lee, Rabindra Tirouvanziam, Juan B. Gutiérrez, Chris Ibegbu, Tracey J. Lamb, Jan Pohl, Sarah T. Pruett, Dean P. Jones, Mark P. Styczynski, Eberhard O. Voit, Alberto Moreno, Mary R. Galinski, Jessica C. Kissinger

Source: Scientific Data, Vol 9, Iss 1, Pp 1-43 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/8706a9e9716845819613fdcc3852e381

Exposome epidemiology for suspect environmental chemical exposures during pregnancy linked to subsequent breast cancer diagnosis

Authors: Young-Mi Go, Jaclyn Weinberg, Sami Teeny, Piera M. Cirillo, Nickilou Y. Krigbaum, Grant Singer, ViLinh Tran, Barbara A. Cohn, Dean P. Jones

Source: Environment International, Vol 178, Iss , Pp 108112- (2023)

Subject Terms: Cancer, Exposome, Metabolomics, Pregnancy, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0160412023003859; https://doaj.org/toc/0160-4120

Access URL: https://doaj.org/article/638c58d8d93f487fb6f7830bc291c418

Malaria disrupts the rhesus macaque gut microbiome

Authors: Danielle N. Farinella, Sukhpreet Kaur, ViLinh Tran, Monica Cabrera-Mora, Chester J. Joyner, Stacey A. Lapp, Suman B. Pakala, Mustafa V. Nural, Jeremy D. DeBarry, Jessica C. Kissinger, Dean P. Jones, Alberto Moreno, Mary R. Galinski, Regina Joice Cordy

Source: Frontiers in Cellular and Infection Microbiology, Vol 12 (2023)

Subject Terms: microbiome, malaria, primate, relapse, Plasmodium, metabolomics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.1058926/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/e955d50ca9814ad8b2b157d28e75261a

Use of high-resolution metabolomics to assess the biological perturbations associated with maternal exposure to Bisphenol A and Bisphenol F among pregnant African American women

Authors: Rachel Tchen, Youran Tan, Dana Boyd Barr, P. Barry Ryan, ViLinh Tran, Zhenjiang Li, Yi-Juan Hu, Alicia K. Smith, Dean P. Jones, Anne L. Dunlop, Donghai Liang

Source: Environment International, Vol 169, Iss , Pp 107530- (2022)

Subject Terms: Bisphenol A, Bisphenol F, Urinary bisphenol metabolites, High-resolution metabolomics, Metabolic perturbations, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0160412022004573; https://doaj.org/toc/0160-4120

Access URL: https://doaj.org/article/c23452518b6641239b477e801bae76b9

Addressing the batch effect issue for LC/MS metabolomics data in data preprocessing

Authors: Qin Liu, Douglas Walker, Karan Uppal, Zihe Liu, Chunyu Ma, ViLinh Tran, Shuzhao Li, Dean P. Jones, Tianwei Yu

Source: Scientific Reports, Vol 10, Iss 1, Pp 1-13 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/b7e4a35c4a4445a4849e3d300e5b7365

Plasmodium knowlesi Cytoadhesion Involves SICA Variant Proteins

Authors: Mariko S. Peterson, Chester J. Joyner, Stacey A. Lapp, Jessica A. Brady, Jennifer S. Wood, Monica Cabrera-Mora, Celia L. Saney, Luis L. Fonseca, Wayne T. Cheng, Jianlin Jiang, Stephanie R. Soderberg, Mustafa V. Nural, Allison Hankus, Deepa Machiah, Ebru Karpuzoglu, Jeremy D. DeBarry, MaHPIC-Consortium, Rabindra Tirouvanziam, Jessica C. Kissinger, Alberto Moreno, Sanjeev Gumber, Eberhard O. Voit, Juan B. Gutierrez, Regina Joice Cordy, Mary R. Galinski, Dave C. Anderson, Ferhat Ay, Cristiana F. A. Brito, John W. Barnwell, Megan DeBarry, Steven E. Bosinger, Jung-Ting Chien, Jinho Choi, Anuj Gupta, Jay C. Humphrey, Chris Ibegbu, Xuntian Jiang, Dean P. Jones, Nicolas Lackman, Tracey J. Lamb, Frances E.-H. Lee, Karine Gaelle Le Roche, Shuzhao Li, Esmeralda V.S. Meyer, Diego M. Moncada-Giraldo, Dan Ory, Jan Pohl, Saeid Safaei, Ignacio Sanz, Maren Smith, Gregory Tharp, ViLinh Tran, Elizabeth D. Trippe, Karan Uppal, Susanne Warrenfeltz, Tyrone Williams, Zerotti L. Woods

Source: Frontiers in Cellular and Infection Microbiology, Vol 12 (2022)

Subject Terms: malaria, antigenic variation, rhesus monkey (Macaca mulatta), gastritis, anemia, infected erythrocytes, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2022.888496/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/f9d42a57757a4753b7d629da228ac99f

Antagonistic Interactions in Mitochondria ROS Signaling Responses to Manganese

Authors: Jolyn Fernandes, Karan Uppal, Ken H. Liu, Xin Hu, Michael Orr, ViLinh Tran, Young-Mi Go, Dean P. Jones

Source: Antioxidants, Vol 12, Iss 4, p 804 (2023)

Subject Terms: mitochondria, antioxidants, oxidative phosphorylation, redox regulation, exposome, integrated omics, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.mdpi.com/2076-3921/12/4/804; https://doaj.org/toc/2076-3921

Access URL: https://doaj.org/article/73bcf93c41c042fa9f6d6e022c5ee543

An atlas of metallome and metabolome interactions and associations with incident diabetes in the Strong Heart Family Study

Authors: Tiffany R. Sanchez, Xin Hu, Jinying Zhao, ViLinh Tran, Nancy Loiacono, Young-Mi Go, Walter Goessler, Shelley Cole, Jason Umans, Dean P. Jones, Ana Navas-Acien, Karan Uppal

Source: Environment International, Vol 157, Iss , Pp 106810- (2021)

Subject Terms: Integrative omics, Metabolomics, Metals, Metallomics, Metal-mixtures, Diabetes, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0160412021004359; https://doaj.org/toc/0160-4120

Access URL: https://doaj.org/article/5d10ff955b8f42c5861aa65456d65af6

Perturbations of the arginine metabolome following exposures to traffic-related air pollution in a panel of commuters with and without asthma

Authors: Donghai Liang, Chandresh N. Ladva, Rachel Golan, Tianwei Yu, Douglas I. Walker, Stefanie E. Sarnat, Roby Greenwald, Karan Uppal, ViLinh Tran, Dean P. Jones, Armistead G. Russell, Jeremy A. Sarnat

Source: Environment International, Vol 127, Iss , Pp 503-513 (2019)

Subject Terms: Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0160412019304209; https://doaj.org/toc/0160-4120

Access URL: https://doaj.org/article/cd2545ca758447499347c24397d0fb79

Transcriptomic-Metabolomic Profiling in Mouse Lung Tissues Reveals Sex- and Strain-Based Differences

Authors: Jolyn Fernandes, Katelyn Dunigan-Russell, Hua Zhong, Vivian Lin, Mary Silverberg, Stephanie B. Moore, ViLinh Tran, Dean P. Jones, Peter F. Vitiello, Lynette K. Rogers, Trent E. Tipple

Source: Metabolites, Vol 12, Iss 10, p 932 (2022)

Subject Terms: metabolomics, transcriptomics, xMWAS, sex differences, strain differences, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2218-1989/12/10/932; https://doaj.org/toc/2218-1989

Access URL: https://doaj.org/article/789997480be447328f99394fe0810e25

Integrative metabolomics and transcriptomics signatures of clinical tolerance to Plasmodium vivax reveal activation of innate cell immunity and T cell signaling

Authors: Luiz G. Gardinassi, Myriam Arévalo-Herrera, Sócrates Herrera, Regina J. Cordy, ViLinh Tran, Matthew R. Smith, Michelle S. Johnson, Balu Chacko, Ken H. Liu, Victor M. Darley-Usmar, Young-Mi Go, Dean P. Jones, Mary R. Galinski, Shuzhao Li

Source: Redox Biology, Vol 17, Iss , Pp 158-170 (2018)

Subject Terms: Medicine (General), R5-920, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2213231718302556; https://doaj.org/toc/2213-2317

Access URL: https://doaj.org/article/5768d83a0a9a4257af14d0af86dd80cf

Particulate metal exposures induce plasma metabolome changes in a commuter panel study.

Authors: Chandresh Nanji Ladva, Rachel Golan, Donghai Liang, Roby Greenwald, Douglas I Walker, Karan Uppal, Amit U Raysoni, ViLinh Tran, Tianwei Yu, W Dana Flanders, Gary W Miller, Dean P Jones, Jeremy A Sarnat

Source: PLoS ONE, Vol 13, Iss 9, p e0203468 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC6145583?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/385d541124864aa180103624f3e6ce36

The Effect of Anticoagulants, Temperature, and Time on the Human Plasma Metabolome and Lipidome from Healthy Donors as Determined by Liquid Chromatography-Mass Spectrometry

Authors: Manoj Khadka, Andrei Todor, Kristal M. Maner-Smith, Jennifer K. Colucci, ViLinh Tran, David A. Gaul, Evan J. Anderson, Muktha S. Natrajan, Nadine Rouphael, Mark J. Mulligan, Circe E. McDonald, Mehul Suthar, Shuzhao Li, Eric A. Ortlund

Source: Biomolecules, Vol 9, Iss 5, p 200 (2019)

Subject Terms: lipidomics, metabolomics, anticoagulants, vaccine, storage conditions, sample collection, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/2218-273X/9/5/200; https://doaj.org/toc/2218-273X

Access URL: https://doaj.org/article/830767b37d474ed38d2cc3df536856cd

Transcriptome–metabolome wide association study (TMWAS) of maneb and paraquat neurotoxicity reveals network level interactions in toxicologic mechanism

Authors: James R. Roede, Karan Uppal, Youngja Park, ViLinh Tran, Dean P. Jones

Source: Toxicology Reports, Vol 1, Iss C, Pp 435-444 (2014)

Subject Terms: Maneb, Metabolomics, Paraquat, Parkinson's disease, Toxicology. Poisons, RA1190-1270

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2214750014000511; https://doaj.org/toc/2214-7500

Access URL: https://doaj.org/article/a2dabcb3bd044c60955b6dc3a233f18c

Serum metabolomics of slow vs. rapid motor progression Parkinson's disease: a pilot study.

Authors: James R Roede, Karan Uppal, Youngja Park, Kichun Lee, Vilinh Tran, Douglas Walker, Frederick H Strobel, Shannon L Rhodes, Beate Ritz, Dean P Jones

Source: PLoS ONE, Vol 8, Iss 10, p e77629 (2013)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3805572?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/a5960dc0a1ef44ce850deec120273442

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