Using natural language processing and patient journey clustering for temporal phenotyping of antimicrobial therapies for cat bite abscesses

Authors: Hur, Brian, Verspoor, Karin M., Baldwin, Timothy, Hardefeldt, Laura Y., Pfeiffer, Caitlin, Mansfield, Caroline, Scarborough, Riati, Gilkerson, James R.

Source: In Preventive Veterinary Medicine February 2024 223

Use of a Victorian statewide surveillance programme to evaluate the burden of healthcare‐associated Staphylococcus aureus bacteraemia and Clostridioides difficile infection in patients with cancer

Authors: Valentine, Jake C., Hall, Lisa, Verspoor, Karin M., Gillespie, Elizabeth, Worth, Leon J.

Source: Internal medicine journal. 52(7):1215-1224

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157801476.0x000001&indx=1&recIds=ETOCvdc_100157801476.0x000001

Drawing on millions of biomedical journal publications to do predictive biology

Authors: Verspoor, Karin M.

Source: 2015 International Conference on Big Data and Smart Computing (BIGCOMP) Big Data and Smart Computing (BigComp), 2015 International Conference on. :251-253 Feb, 2015

Relation: 2015 International Conference on Big Data and Smart Computing (BigComp)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Authors: Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed ME, Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, C., Dukka B K., Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Hieta, Reija, Legge, Duncan, Lovering, Ruth C, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E, Pavlidis, Paul, Feng, Shou, Cejuela, Juan M, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio, del Pozo, Angela, Fernández, José M, Maietta, Paolo, Valencia, Alfonso, Tress, Michael L, Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W, van Dijk, Aalt DJ, Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C, Vencio, Ricardo ZN, Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael JE, Wass, Mark N, Huntley, Rachael P, Martin, Maria J, O'Donovan, Claire, Robinson, Peter N, Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C, Brenner, Steven E, Linial, Michal, Orengo, Christine A, Rost, Burkhard, Greene, Casey S, Mooney, Sean D, Friedberg, Iddo, Radivojac, Predrag

Subject Terms: Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1601.00891

Knowledge Integration in OpenWorlds: Utilizing the Mathematics of Hierarchical Structure

Authors: Joslyn, Cliff A., Verspoor, Karin M., Gessler, Damian DG

Source: International Conference on Semantic Computing (ICSC 2007) Semantic Computing, 2007. ICSC 2007. International Conference on. :105-112 Sep, 2007

Relation: International Conference on Semantic Computing

Burden and clinical outcomes of hospital-coded infections in patients with cancer: an 11-year longitudinal cohort study at an Australian cancer centre

Authors: Valentine, Jake C., Hall, Lisa, Spelman, Tim, Verspoor, Karin M., Seymour, John F., Rischin, Danny, Thursky, Karin A., Slavin, Monica A., Worth, Leon J.

Source: Supportive care in cancer. 28(12):6023-6034

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187180087.0x000001&indx=1&recIds=ETOCvdc_100187180087.0x000001

Crowdsourcing critical appraisal of research evidence (CrowdCARE) was found to be a valid approach to assessing clinical research quality

Authors: Pianta, Michael J., Makrai, Eve, Verspoor, Karin M., Cohn, Trevor A., Downie, Laura E.

Source: In Journal of Clinical Epidemiology December 2018 104:8-14

The current scope of healthcare-associated infection surveillance activities in hospitalized immunocompromised patients: a systematic review

Authors: Valentine, Jake C, Hall, Lisa, Verspoor, Karin M, Worth, Leon J

Source: International journal of epidemiology. 48(6):1768-1782

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100100510778.0x000001&indx=1&recIds=ETOCvdc_100100510778.0x000001

Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts.

Authors: Verspoor, Karin M.¹ min.song@yonsei.ac.uk, Go Eun Heo², Keun Young Kang², Min Song² min.song@yonsei.ac.uk, Heo, Go Eun² (AUTHOR), Kang, Keun Young² (AUTHOR), Song, Min² (AUTHOR)

Source: BMC Medical Informatics & Decision Making. 7/18/2016, Vol. 16, p37-47. 11p. 4 Diagrams, 5 Charts.

Subject Terms: *HUMAN genetics, *VERTICAL-speed indicators, *DATA mining, *TEXT mining, *SINGLE nucleotide polymorphisms, *COLON tumors, *DATABASES, *GENETICS, RECTUM tumors

Evaluating the dose, indication and agreement with guidelines of antimicrobial use in companion animal practice with natural language processing.

Authors: Hur, Brian, Hardefeldt, Laura Y., Verspoor, Karin M., Baldwin, Timothy, Gilkerson, James R.

Source: JAC-Antimicrobial Resistance; Feb2022, Vol. 4 Issue 1, p1-9, 9p

Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients.

Authors: Valentine, Jake C., Worth, Leon J., Verspoor, Karin M., Hall, Lisa, Yeoh, Daniel K., Thursky, Karin A., Clark, Julia E., Haeusler, Gabrielle M.

Source: PLoS ONE; 9/9/2020, Vol. 15 Issue 9, p1-14, 14p

Subject Terms: INVASIVE candidiasis, CANCER patients, CHILDREN'S hospitals, MYCOSES, CHILDHOOD cancer

Geographic Terms: VICTORIA

TextMining Improves Prediction of Protein Functional Sites.

Authors: Verspoor, Karin M.¹ karin.verspoor@ucdenver.edu, Cohn, Judith D.², Ravikumar, Komandur E.¹, Wall, Michael E.^2,3 mewall@lanl.gov

Source: PLoS ONE. Feb2012, Vol. 7 Issue 2, p1-16. 16p.

Subject Terms: *IMMUNOGLOBULIN idiotypes, *CATALOGING, *PHILOLOGY, *BIOCHEMISTRY, *IMMUNOSPECIFICITY, *MATERIA medica

Describing the antimicrobial usage patterns of companion animal veterinary practices; free text analysis of more than 4.4 million consultation records.

Authors: Hur, Brian A., Hardefeldt, Laura Y., Verspoor, Karin M., Baldwin, Timothy, Gilkerson, James R.

Source: PLoS ONE; 3/13/2020, Vol. 15 Issue 3, p1-15, 15p

Subject Terms: VETERINARY drugs, DRUG resistance in microorganisms, NATURAL language processing, FELIDAE, PETS

Geographic Terms: AUSTRALIA

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Performance of ICD-10-AM codes for quality improvement monitoring of hospital-acquired pneumonia in a haematology-oncology casemix in Victoria, Australia

Authors: Valentine, Jake C, Gillespie, Elizabeth, Verspoor, Karin M, Hall, Lisa, Worth, Leon J

Source: Health Information Management Journal; 20240101, Issue: Preprints

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References.

Authors: Hoogeveen, Doris¹, doris.hoogeveen@gmail.com, Li Wang², li@liwang.info, Baldwin, Timothy¹, tb@ldwin.net, Verspoor, Karin M.¹, karin.verspoor@unimelb.edu.au

Source: Foundations & Trends in Information Retrieval; 2018, Vol. 12 Issue 1, p116-163, 48p

Chapter 5: Social forum analysis: 5.3 Expert finding.

Authors: Hoogeveen, Doris¹, doris.hoogeveen@gmail.com, Li Wang², li@liwang.info, Baldwin, Timothy¹, tb@ldwin.net, Verspoor, Karin M.¹, karin.verspoor@unimelb.edu.au

Source: Foundations & Trends in Information Retrieval; 2018, Vol. 12 Issue 1, p103-109, 7p

Chapter 5: Social forum analysis: 5.2 User and community analysis.

Authors: Hoogeveen, Doris¹, doris.hoogeveen@gmail.com, Li Wang², li@liwang.info, Baldwin, Timothy¹, tb@ldwin.net, Verspoor, Karin M.¹, karin.verspoor@unimelb.edu.au

Source: Foundations & Trends in Information Retrieval; 2018, Vol. 12 Issue 1, p100-103, 4p

Chapter 5: Social forum analysis: 5.1 User satisfaction.

Authors: Hoogeveen, Doris¹, doris.hoogeveen@gmail.com, Li Wang², li@liwang.info, Baldwin, Timothy¹, tb@ldwin.net, Verspoor, Karin M.¹, karin.verspoor@unimelb.edu.au

Source: Foundations & Trends in Information Retrieval; 2018, Vol. 12 Issue 1, p97-100, 4p