actifpTM: a refined confidence metric of AlphaFold2 predictions involving flexible regions

Authors: Varga, Julia K., Ovchinnikov, Sergey, Schueler-Furman, Ora

Subject Terms: Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2412.15970

Basic Surgical Skill Training before a Vascular Course Improves the Quality of Vascular Anastomoses: A Randomized Controlled Trial

Authors: Varga, Julia, Kiss-Papai, Levente, Varga, Peter, Gloviczki, Peter, Gasz, Balazs

Source: In Annals of Vascular Surgery January 2025 110 Part A:217-225

Examining the Predictive Validity of the Duolingo English Test: Evidence from a Major UK University

Authors: Isaacs, Talia (ORCID 0000-0003-4302-3379), Hu, Ruolin, Trenkic, Danijela, Varga, Julia

Source: Language Testing. Jul 2023 40(3):748-770.

Peer Reviewed: Y

Page Count: 23

Descriptors: Predictive Validity, Educational Technology, Handheld Devices, Language Tests, English (Second Language), Foreign Countries, Computer Assisted Testing, College Entrance Examinations, Academic Achievement, Graduate Students, Undergraduate Students, Second Language Learning, Foreign Students, Predictor Variables

Geographic Terms: United Kingdom (London)

Assessment and Survey Identifiers: International English Language Testing System, Test of English as a Foreign Language

Unbiased phenotype and genotype matching maximizes gene discovery and diagnostic yield

Authors: Rips, Jonathan, Halstuk, Orli, Fuchs, Adina, Lang, Ziv, Sido, Tal, Gershon-Naamat, Shiri, Abu-Libdeh, Bassam, Edvardson, Simon, Salah, Somaya, Breuer, Oded, Hadhud, Mohamad, Eden, Sharon, Simon, Itamar, Slae, Mordechai, Damseh, Nadirah S., Abu-Libdeh, Abdulsalam, Eskin-Schwartz, Marina, Birk, Ohad S., Varga, Julia, Schueler-Furman, Ora, Rosenbluh, Chaggai, Elpeleg, Orly, Yanovsky-Dagan, Shira, Mor-Shaked, Hagar, Harel, Tamar

Source: In Genetics in Medicine April 2024 26(4)

Matching protein surface structural patches for high-resolution blind peptide docking

Authors: Khramushin, Alisa, Ben-Aharon, Ziv, Tsaban, Tomer, Varga, Julia K., Avraham, Orly, Schueler-Furman, Ora

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 May 01. 119(18), 1-10.

Access URL: https://www.jstor.org/stable/27151552

Discriminating physiological from non‐physiological interfaces in structures of protein complexes: A community‐wide study

Authors: Schweke, Hugo, Xu, Qifang, Tauriello, Gerardo, Pantolini, Lorenzo, Schwede, Torsten, Cazals, Frédéric, Lhéritier, Alix, Fernandez‐Recio, Juan, Rodríguez‐Lumbreras, Luis Angel, Schueler‐Furman, Ora, Varga, Julia K., Jiménez‐García, Brian, Réau, Manon F., Bonvin, Alexandre M. J. J., Savojardo, Castrense, Martelli, Pier‐Luigi, Casadio, Rita, Tubiana, Jérôme, Wolfson, Haim J., Oliva, Romina, Barradas‐Bautista, Didier, Ricciardelli, Tiziana, Cavallo, Luigi, Venclovas, Česlovas, Olechnovič, Kliment, Guerois, Raphael, Andreani, Jessica, Martin, Juliette, Wang, Xiao, Terashi, Genki, Sarkar, Daipayan, Christoffer, Charles, Aderinwale, Tunde, Verburgt, Jacob, Kihara, Daisuke, Marchand, Anthony, Correia, Bruno E., Duan, Rui, Qiu, Liming, Xu, Xianjin, Zhang, Shuang, Zou, Xiaoqin, Dey, Sucharita, Dunbrack, Roland L., Levy, Emmanuel D., Wodak, Shoshana J.

Source: Proteomics. 23(17)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100192053847.0x000001&indx=1&recIds=ETOCvdc_100192053847.0x000001

Who Binds Better? Let Alphafold2 Decide!

Authors: Varga, Julia K., Schueler‐Furman, Ora

Source: Angewandte Chemie international edition. 62(28)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100186563937.0x000001&indx=1&recIds=ETOCvdc_100186563937.0x000001

Out-migration and attrition of physicians and dentists before and after EU accession (2003 and 2011): the case of Hungary

Authors: Varga, Júlia

Source: The European Journal of Health Economics, 2017 Dec 01. 18(9), 1079-1093.

Access URL: https://www.jstor.org/stable/45156951

Structure-based prediction of HDAC6 substrates validated by enzymatic assay reveals determinants of promiscuity and detects new potential substrates.

Authors: Varga, Julia K.¹ (AUTHOR), Diffley, Kelsey² (AUTHOR), Welker Leng, Katherine R.² (AUTHOR), Fierke, Carol A.^2,3 (AUTHOR), Schueler-Furman, Ora¹ (AUTHOR) ora.furman-schueler@mail.huji.ac.il

Source: Scientific Reports. 2/2/2022, Vol. 12 Issue 1, p1-15. 15p.

Subject Terms: *PEPTIDES, *PROTEIN folding, *HEAT shock proteins, *CELL survival, *TUBULINS, *DEACETYLASES, *CANCER cells

Lifting the Mist on Gastric Stem Cells

Authors: Varga, Julia, Greten, Florian R.

Source: In Cell Stem Cell 7 January 2016 18(1):7-9

Systematic discovery of protein interaction interfaces using AlphaFold and experimental validation.

Authors: Lee, Chop Yan, Hubrich, Dalmira, Varga, Julia K, Schäfer, Christian, Welzel, Mareen, Schumbera, Eric, Djokic, Milena, Strom, Joelle M, Schönfeld, Jonas, Geist, Johanna L, Polat, Feyza, Gibson, Toby J, Keller Valsecchi, Claudia Isabelle, Kumar, Manjeet, Schueler-Furman, Ora, Luck, Katja

Source: Molecular Systems Biology; Feb2024, Vol. 20 Issue 2, p75-97, 23p

Subject Terms: PROTEIN fractionation, CYTOSKELETAL proteins, PROTEIN structure, STRUCTURAL models, NEUROLOGICAL disorders, PROTEIN-protein interactions

The Youranastomosis Project: A Vision to Take Vascular Surgical Education to the Next Level

Authors: Gasz, Balazs, Varga, Julia, Kiss-Papai, Levente, Huszak, Marcell, Varga, Peter, Gloviczki, Peter

Source: Journal of vascular surgery. 77(4):48S-48S

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100186289709.0x000001&indx=1&recIds=ETOCvdc_100186289709.0x000001

The architect who never sleeps: Tumor-induced plasticity

Authors: Varga, Julia, De Oliveira, Tiago, Greten, Florian R.

Source: In FEBS Letters 1 August 2014 588(15):2422-2427

Structural study of UFL1‐UFC1 interaction uncovers the role of UFL1 N‐terminal helix in ufmylation.

Authors: Banerjee, Sayanika, Varga, Julia K, Kumar, Manoj, Zoltsman, Guy, Rotem‐Bamberger, Shahar, Cohen‐Kfir, Einav, Isupov, Michail N, Rosenzweig, Rina, Schueler‐Furman, Ora, Wiener, Reuven

Source: EMBO Reports; 12/6/2023, Vol. 24 Issue 12, p1-14, 14p

The Gastrointestinal Tumor Microenvironment

Authors: Quante, Michael, Varga, Julia, Wang, Timothy C., Greten, Florian R.

Source: In Gastroenterology July 2013 145(1):63-78

Partial proteolysis improves the identification of the extracellular segments of transmembrane proteins by surface biotinylation

Authors: Langó, Tamás, Pataki, Zoltán Gergő, Turiák, Lilla, Ács, András, Varga, Julia Kornélia, Várady, György, Kucsma, Nóra, Drahos, László, Tusnády, Gábor E.

Source: Scientific reports. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174632453.0x000001&indx=1&recIds=ETOCvdc_100174632453.0x000001

The Role of Labour Market Expectations and Admission Probabilities in Students' Application Decisions on Higher Education: The Case of Hungary

Authors: Varga, Julia

Source: Education Economics. Sep 2006 14(3):309-327.

Peer Reviewed: Y

Page Count: 19

Descriptors: Foreign Countries, Higher Education, Secondary School Students, Probability, Labor Market, Student Attitudes, College Applicants, Career Choice, College Choice, Human Capital

Geographic Terms: Hungary

Access URL: https://taylorandfrancis.metapress.com/link.asp?target=contribution&id=R4UR130U7264164V

EARNINGS EXPECTATIONS AND HIGHER-EDUCATION ENROLMENT DECISIONS IN HUNGARY

Authors: VARGA, JÚLIA

Source: Society and Economy, 2002 Jan 01. 24(1), 121-152.

Access URL: https://www.jstor.org/stable/41471929

DOES PRIVATE AND COST-PRICED HIGHER EDUCATION PRODUCE POOR QUALITY? An Empirical Analysis Based on Labour-market-success Indicators of Hungarian Higher-education Graduates

Authors: GALASI, PÉTER, VARGA, JÚLIA

Source: Society and Economy, 2002 Jan 01. 24(3), 333-361.

Access URL: https://www.jstor.org/stable/41471946

Colon tumour cell death causes mTOR dependence by paracrine P2X4 stimulation.

Authors: Schmitt, Mark, Ceteci, Fatih, Gupta, Jalaj, Pesic, Marina, Böttger, Tim W., Nicolas, Adele M., Kennel, Kilian B., Engel, Esther, Schewe, Matthias, Callak Kirisözü, Asude, Petrocelli, Valentina, Dabiri, Yasamin, Varga, Julia, Ramakrishnan, Mallika, Karimova, Madina, Ablasser, Andrea, Sato, Toshiro, Arkan, Melek C., de Sauvage, Frederic J., Greten, Florian R.

Source: Nature; Dec2022, Vol. 612 Issue 7939, p347-353, 7p