Gradients of brain organization: Smooth sailing from methods development to user community

Authors: Royer, Jessica, Paquola, Casey, Valk, Sofie L., Kirschner, Matthias, Hong, Seok-Jun, Park, Bo-yong, Bethlehem, Richard A. I., Leech, Robert, Yeo, B. T. Thomas, Jefferies, Elizabeth, Smallwood, Jonathan, Margulies, Daniel, Bernhardt, Boris C.

Subject Terms: Quantitative Biology - Other Quantitative Biology

Access URL: http://arxiv.org/abs/2402.11055

Serum BDNF Increase After 9-Month Contemplative Mental Training Is Associated With Decreased Cortisol Secretion and Increased Dentate Gyrus Volume: Evidence From a Randomized Clinical Trial

Authors: Puhlmann, Lara M.C. ^{a, b, ∗}, Vrtička, Pascal ^{a, c}, Linz, Roman ^a, Valk, Sofie L. ^{d, e, f}, Papassotiriou, Ioannis ^g, Chrousos, George P. ^h, Engert, Veronika ^{a, i, j, k, 1}, Singer, Tania ^{l, 1}

Source: In Biological Psychiatry Global Open Science March 2025 5(2)

Atypical Brain Aging and Its Association With Working Memory Performance in Major Depressive Disorder

Authors: Adamson, Chris, Adler, Sophie, Alexander-Bloch, Aaron F., Anagnostou, Evdokia, Anderson, Kevin M., Areces-Gonzalez, Ariosky, Astle, Duncan E., Auyeung, Bonnie, Ayub, Muhammad, Bae, Jong Bin, Ball, Gareth, Baron-Cohen, Simon, Beare, Richard, Bedford, Saashi A., Benegal, Vivek, Bethlehem, Richard A.I., Beyer, Frauke, Blangero, John, Cábez, Manuel Blesa, Boardman, James P., Borzage, Matthew, Bosch-Bayard, Jorge F., Bourke, Niall, Bullmore, Edward T., Calhoun, Vince D., Chakravarty, Mallar M., Chen, Christina, Chertavian, Casey, Chetelat, Gaël, Chong, Yap S., Corvin, Aiden, Costantino, Manuela, Courchesne, Eric, Crivello, Fabrice, Cropley, Vanessa L., Crosbie, Jennifer, Crossley, Nicolas, Delarue, Marion, Delorme, Richard, Desrivieres, Sylvane, Devenyi, Gabriel, Di Biase, Maria A., Dolan, Ray, Donald, Kirsten A., Donohoe, Gary, Dorfschmidt, Lena, Dunlop, Katharine, Edwards, Anthony D., Elison, Jed T., Ellis, Cameron T., Elman, Jeremy A., Eyler, Lisa, Fair, Damien A., Fletcher, Paul C., Fonagy, Peter, Franz, Carol E., Galan-Garcia, Lidice, Gholipour, Ali, Giedd, Jay, Gilmore, John H., Glahn, David C., Goodyer, Ian M., Grant, P.E., Groenewold, Nynke A., Gudapati, Shreya, Gunning, Faith M., Gur, Raquel E., Gur, Ruben C., Hammill, Christopher F., Hansson, Oskar, Hedden, Trey, Heinz, Andreas, Henson, Richard N., Heuer, Katja, Hoare, Jacqueline, Holla, Bharath, Holmes, Avram J., Huang, Hao, Ipser, Jonathan, Jack, Clifford R., Jr., Jackowski, Andrea P., Jia, Tianye, Jones, David T., Jones, Peter B., Kahn, Rene S., Karlsson, Hasse, Karlsson, Linnea, Kawashima, Ryuta, Kelley, Elizabeth A., Kern, Silke, Kim, Ki-Woong, Kitzbichler, Manfred G., Kremen, William S., Lalonde, François, Landeau, Brigitte, Lerch, Jason, Lewis, John D., Li, Jiao, Liao, Wei, Liston, Conor, Lombardo, Michael V., Lv, Jinglei, Mallard, Travis T., Marcelis, Machteld, Mathias, Samuel R., Mazoyer, Bernard, McGuire, Philip, Meaney, Michael J., Mechelli, Andrea, Misic, Bratislav, Morgan, Sarah E., Mothersill, David, Ortinau, Cynthia, Ossenkoppele, Rik, Ouyang, Minhui, Palaniyappan, Lena, Paly, Leo, Pan, Pedro M., Pantelis, Christos, Park, Min Tae M., Paus, Tomas, Pausova, Zdenka, Paz-Linares, Deirel, Binette, Alexa Pichet, Pierce, Karen, Qian, Xing, Qiu, Anqi, Raznahan, Armin, Rittman, Timothy, Rodrigue, Amanda, Rollins, Caitlin K., Romero-Garcia, Rafael, Ronan, Lisa, Rosenberg, Monica D., Rowitch, David H., Salum, Giovanni A., Satterthwaite, Theodore D., Schaare, H. Lina, Schabdach, Jenna, Schachar, Russell J., Schöll, Michael, Schultz, Aaron P., Seidlitz, Jakob, Sharp, David, Shinohara, Russell T., Skoog, Ingmar, Smyser, Christopher D., Sperling, Reisa A., Stein, Dan J., Stolicyn, Aleks, Suckling, John, Sullivan, Gemma, Thyreau, Benjamin, Toro, Roberto, Traut, Nicolas, Tsvetanov, Kamen A., Turk-Browne, Nicholas B., Tuulari, Jetro J., Tzourio, Christophe, Vachon-Presseau, Étienne, Valdes-Sosa, Mitchell J., Valdes-Sosa, Pedro A., Valk, Sofie L., van Amelsvoort, Therese, Vandekar, Simon N., Vasung, Lana, Vértes, Petra E., Victoria, Lindsay W., Villeneuve, Sylvia, Villringer, Arno, Vogel, Jacob W., Wagstyl, Konrad, Wang, Yin-Shan S., Warfield, Simon K., Warrier, Varun, Westman, Eric, Westwater, Margaret L., Whalley, Heather C., White, Simon R., Witte, A. Veronica, Yang, Ning, Yeo, B.T. Thomas, Yun, Hyuk Jin, Zalesky, Andrew, Zar, Heather J., Zettergren, Anna, Zhou, Juan H., Ziauddeen, Hisham, Zimmerman, Dabriel, Zugman, Andre, Zuo, Xi-Nian N., Ho, Natalie C.W., Nogovitsyn, Nikita, Metzak, Paul, Ballester, Pedro L., Hassel, Stefanie, Rotzinger, Susan, Poppenk, Jordan, Lam, Raymond W., Taylor, Valerie H., Milev, Roumen, Frey, Benicio N., Harkness, Kate L., Addington, Jean, Kennedy, Sidney H.

Source: In Biological Psychiatry: Cognitive Neuroscience and Neuroimaging August 2024 9(8):786-799

Mapping pathways to neuronal atrophy in healthy, mid-aged adults: From chronic stress to systemic inflammation to neurodegeneration?

Authors: Schaefer, Julia K., Engert, Veronika, Valk, Sofie L., Singer, Tania, Puhlmann, Lara M.C.

Source: In Brain, Behavior, & Immunity - Health July 2024 38

Whole-brain structural connectome asymmetry in autism

Authors: Yoo, Seulki, Jang, Yurim, Hong, Seok-Jun, Park, Hyunjin, Valk, Sofie L., Bernhardt, Boris C., Park, Bo-yong

Source: In NeuroImage March 2024 288

Connectome-wide structure-function coupling models implicate polysynaptic alterations in autism

Authors: Park, Bo-yong, Benkarim, Oualid, Weber, Clara F., Kebets, Valeria, Fett, Serena, Yoo, Seulki, Martino, Adriana Di, Milham, Michael P., Misic, Bratislav, Valk, Sofie L., Hong, Seok-Jun, Bernhardt, Boris C.

Source: In NeuroImage January 2024 285

BrainStat: A toolbox for brain-wide statistics and multimodal feature associations

Authors: Larivière, Sara, Bayrak, Şeyma, Vos de Wael, Reinder, Benkarim, Oualid, Herholz, Peer, Rodriguez-Cruces, Raul, Paquola, Casey, Hong, Seok-Jun, Misic, Bratislav, Evans, Alan C., Valk, Sofie L., Bernhardt, Boris C.

Source: In NeuroImage 1 February 2023 266

Heritability of hippocampal functional and microstructural organisation

Authors: Bayrak, Şeyma, de Wael, Reinder Vos, Schaare, H. Lina, Hettwer, Meike D., Caldairou, Benoit, Bernasconi, Andrea, Bernasconi, Neda, Bernhardt, Boris C., Valk, Sofie L.

Source: In NeuroImage 1 December 2022 264

Diagnosis-informed connectivity subtyping discovers subgroups of autism with reproducible symptom profiles

Authors: Choi, Hyoungshin, Byeon, Kyoungseob, Park, Bo-yong, Lee, Jong-eun, Valk, Sofie L., Bernhardt, Boris, Martino, Adriana Di, Milham, Michael, Hong, Seok-Jun, Park, Hyunjin

Source: In NeuroImage 1 August 2022 256

A multimodal characterization of low-dimensional thalamocortical structural connectivity patterns.

Authors: John, Alexandra, Hettwer, Meike D., Schaare, H. Lina, Saberi, Amin, Bayrak, Şeyma, Wan, Bin, Royer, Jessica, Bernhardt, Boris C., Valk, Sofie L.

Source: Communications Biology; 2/5/2025, Vol. 8 Issue 1, p1-15, 15p

Subject Terms: DEFAULT mode network, FUNCTIONAL connectivity, MEDICAL sciences, THALAMUS, THALAMIC nuclei, MYELIN

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Behavioral, Anatomical and Heritable Convergence of Affect and Cognition in Superior Frontal Cortex

Authors: Kraljević, Nevena, Schaare, H. Lina, Eickhoff, Simon B., Kochunov, Peter, Yeo, B.T. Thomas, Kharabian Masouleh, Shahrzad, Valk, Sofie L.

Source: In NeuroImage November 2021 243

Recent developments in representations of the connectome

Authors: Bijsterbosch, Janine D., Valk, Sofie L., Wang, Danhong, Glasser, Matthew F.

Source: In NeuroImage November 2021 243

Signal diffusion along connectome gradients and inter-hub routing differentially contribute to dynamic human brain function

Authors: Park, Bo-yong, Vos de Wael, Reinder, Paquola, Casey, Larivière, Sara, Benkarim, Oualid, Royer, Jessica, Tavakol, Shahin, Cruces, Raul R., Li, Qiongling, Valk, Sofie L., Margulies, Daniel S., Mišić, Bratislav, Bzdok, Danilo, Smallwood, Jonathan, Bernhardt, Boris C.

Source: In NeuroImage 1 January 2021 224

Structural Connectivity Gradients of the Temporal Lobe Serve as Multiscale Axes of Brain Organization and Cortical Evolution

Authors: Vos de Wael, Reinder, Royer, Jessica, Tavakol, Shahin, Wang, Yezhou, Paquola, Casey, Benkarim, Oualid, Eichert, Nicole, Larivière, Sara, Xu, Ting, Misic, Bratislav, Smallwood, Jonathan, Valk, Sofie L, Bernhardt, Boris C

Source: Cerebral cortex. 31(11):5151-5164

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131725111.0x000001&indx=1&recIds=ETOCvdc_100131725111.0x000001

Microstructural asymmetry in the human cortex.

Authors: Wan, Bin, Saberi, Amin, Paquola, Casey, Schaare, H. Lina, Hettwer, Meike D., Royer, Jessica, John, Alexandra, Dorfschmidt, Lena, Bayrak, Şeyma, Bethlehem, Richard A. I., Eickhoff, Simon B., Bernhardt, Boris C., Valk, Sofie L.

Source: Nature Communications; 11/22/2024, Vol. 15 Issue 1, p1-13, 13p

Subject Terms: MAGNETIZATION transfer, ASYMMETRY (Linguistics), CEREBRAL cortex, MENTAL health, CEREBRAL dominance

Personality traits vary in their association with brain activity across situations.

Authors: Hardikar, Samyogita, McKeown, Brontë, Turnbull, Adam, Xu, Ting, Valk, Sofie L., Bernhardt, Boris C., Margulies, Daniel S., Milham, Michael P., Jefferies, Elizabeth, Leech, Robert, Villringer, Arno, Smallwood, Jonathan

Source: Communications Biology; 11/12/2024, Vol. 7 Issue 1, p1-8, 8p

Subject Terms: HUMAN behavior, DISSOCIATIVE identity disorder, PERSONALITY, SAMPLE size (Statistics), COGNITION

Personality and local brain structure: Their shared genetic basis and reproducibility

Authors: Valk, Sofie L., Hoffstaedter, Felix, Camilleri, Julia A., Kochunov, Peter, Yeo, B.T. Thomas, Eickhoff, Simon B.

Source: In NeuroImage 15 October 2020 220

Lack of structural brain alterations associated with insomnia: findings from the ENIGMA‐Sleep Working Group

Authors: Weihs, Antoine, Frenzel, Stefan, Bi, Hanwen, Schiel, Julian E., Afshani, Mortaza, Bülow, Robin, Ewert, Ralf, Fietze, Ingo, Hoffstaedter, Felix, Jahanshad, Neda, Khazaie, Habibolah, Riemann, Dieter, Rostampour, Masoumeh, Stubbe, Beate, Thomopoulos, Sophia I., Thompson, Paul M., Valk, Sofie L., Völzke, Henry, Zarei, Mojtaba, Eickhoff, Simon B., Grabe, Hans J., Patil, Kaustubh R., Spiegelhalder, Kai, Tahmasian, Masoud

Source: Journal of sleep research. 32(5)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100192130021.0x000001&indx=1&recIds=ETOCvdc_100192130021.0x000001

Schizophrenia and Macroscale Brain Structure: Genes in Context

Authors: Hettwer, Meike D., Saberi, Amin, Fan, Yun-Shuang, Valk, Sofie L.

Source: Biological psychiatry. 92(4):258-260

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100170746574.0x000001&indx=1&recIds=ETOCvdc_100170746574.0x000001