Same data, different analysts: variation in effect sizes due to analytical decisions in ecology and evolutionary biology

Authors: Elliot Gould, Hannah S. Fraser, Timothy H. Parker, Shinichi Nakagawa, Simon C. Griffith, Peter A. Vesk, Fiona Fidler, Daniel G. Hamilton, Robin N. Abbey-Lee, Jessica K. Abbott, Luis A. Aguirre, Carles Alcaraz, Irith Aloni, Drew Altschul, Kunal Arekar, Jeff W. Atkins, Joe Atkinson, Christopher M. Baker, Meghan Barrett, Kristian Bell, Suleiman Kehinde Bello, Iván Beltrán, Bernd J. Berauer, Michael Grant Bertram, Peter D. Billman, Charlie K. Blake, Shannon Blake, Louis Bliard, Andrea Bonisoli-Alquati, Timothée Bonnet, Camille Nina Marion Bordes, Aneesh P. H. Bose, Thomas Botterill-James, Melissa Anna Boyd, Sarah A. Boyle, Tom Bradfer-Lawrence, Jennifer Bradham, Jack A. Brand, Martin I. Brengdahl, Martin Bulla, Luc Bussière, Ettore Camerlenghi, Sara E. Campbell, Leonardo L. F. Campos, Anthony Caravaggi, Pedro Cardoso, Charles J. W. Carroll, Therese A. Catanach, Xuan Chen, Heung Ying Janet Chik, Emily Sarah Choy, Alec Philip Christie, Angela Chuang, Amanda J. Chunco, Bethany L. Clark, Andrea Contina, Garth A. Covernton, Murray P. Cox, Kimberly A. Cressman, Marco Crotti, Connor Davidson Crouch, Pietro B. D’Amelio, Alexandra Allison de Sousa, Timm Fabian Döbert, Ralph Dobler, Adam J. Dobson, Tim S. Doherty, Szymon Marian Drobniak, Alexandra Grace Duffy, Alison B. Duncan, Robert P. Dunn, Jamie Dunning, Trishna Dutta, Luke Eberhart-Hertel, Jared Alan Elmore, Mahmoud Medhat Elsherif, Holly M. English, David C. Ensminger, Ulrich Rainer Ernst, Stephen M. Ferguson, Esteban Fernandez-Juricic, Thalita Ferreira-Arruda, John Fieberg, Elizabeth A. Finch, Evan A. Fiorenza, David N. Fisher, Amélie Fontaine, Wolfgang Forstmeier, Yoan Fourcade, Graham S. Frank, Cathryn A. Freund, Eduardo Fuentes-Lillo, Sara L. Gandy, Dustin G. Gannon, Ana I. García-Cervigón, Alexis C. Garretson, Xuezhen Ge, William L. Geary, Charly Géron, Marc Gilles, Antje Girndt, Daniel Gliksman, Harrison B. Goldspiel, Dylan G. E. Gomes, Megan Kate Good, Sarah C. Goslee, J. Stephen Gosnell, Eliza M. Grames, Paolo Gratton, Nicholas M. Grebe, Skye M. Greenler, Maaike Griffioen, Daniel M. Griffith, Frances J. Griffith, Jake J. Grossman, Ali Güncan, Stef Haesen, James G. Hagan, Heather A. Hager, Jonathan Philo Harris, Natasha Dean Harrison, Sarah Syedia Hasnain, Justin Chase Havird, Andrew J. Heaton, María Laura Herrera-Chaustre, Tanner J. Howard, Bin-Yan Hsu, Fabiola Iannarilli, Esperanza C. Iranzo, Erik N. K. Iverson, Saheed Olaide Jimoh, Douglas H. Johnson, Martin Johnsson, Jesse Jorna, Tommaso Jucker, Martin Jung, Ineta Kačergytė, Oliver Kaltz, Alison Ke, Clint D. Kelly, Katharine Keogan, Friedrich Wolfgang Keppeler, Alexander K. Killion, Dongmin Kim, David P. Kochan, Peter Korsten, Shan Kothari, Jonas Kuppler, Jillian M. Kusch, Malgorzata Lagisz, Kristen Marianne Lalla, Daniel J. Larkin, Courtney L. Larson, Katherine S. Lauck, M. Elise Lauterbur, Alan Law, Don-Jean Léandri-Breton, Jonas J. Lembrechts, Kiara L’Herpiniere, Eva J. P. Lievens, Daniela Oliveira de Lima, Shane Lindsay, Martin Luquet, Ross MacLeod, Kirsty H. Macphie, Kit Magellan, Magdalena M. Mair, Lisa E. Malm, Stefano Mammola, Caitlin P. Mandeville, Michael Manhart, Laura Milena Manrique-Garzon, Elina Mäntylä, Philippe Marchand, Benjamin Michael Marshall, Charles A. Martin, Dominic Andreas Martin, Jake Mitchell Martin, April Robin Martinig, Erin S. McCallum, Mark McCauley, Sabrina M. McNew, Scott J. Meiners, Thomas Merkling, Marcus Michelangeli, Maria Moiron, Bruno Moreira, Jennifer Mortensen, Benjamin Mos, Taofeek Olatunbosun Muraina, Penelope Wrenn Murphy, Luca Nelli, Petri Niemelä, Josh Nightingale, Gustav Nilsonne, Sergio Nolazco, Sabine S. Nooten, Jessie Lanterman Novotny, Agnes Birgitta Olin, Chris L. Organ, Kate L. Ostevik, Facundo Xavier Palacio, Matthieu Paquet, Darren James Parker, David J. Pascall, Valerie J. Pasquarella, John Harold Paterson, Ana Payo-Payo, Karen Marie Pedersen, Grégoire Perez, Kayla I. Perry, Patrice Pottier, Michael J. Proulx, Raphaël Proulx, Jessica L Pruett, Veronarindra Ramananjato, Finaritra Tolotra Randimbiarison, Onja H. Razafindratsima, Diana J. Rennison, Federico Riva, Sepand Riyahi, Michael James Roast, Felipe Pereira Rocha, Dominique G. Roche, Cristian Román-Palacios, Michael S. Rosenberg, Jessica Ross, Freya E. Rowland, Deusdedith Rugemalila, Avery L. Russell, Suvi Ruuskanen, Patrick Saccone, Asaf Sadeh, Stephen M. Salazar, Kris Sales, Pablo Salmón, Alfredo Sánchez-Tójar, Leticia Pereira Santos, Francesca Santostefano, Hayden T. Schilling, Marcus Schmidt, Tim Schmoll, Adam C. Schneider, Allie E. Schrock, Julia Schroeder, Nicolas Schtickzelle, Nick L. Schultz, Drew A. Scott, Michael Peter Scroggie, Julie Teresa Shapiro, Nitika Sharma, Caroline L. Shearer, Diego Simón, Michael I. Sitvarin, Fabrício Luiz Skupien, Heather Lea Slinn, Grania Polly Smith, Jeremy A. Smith, Rahel Sollmann, Kaitlin Stack Whitney, Shannon Michael Still, Erica F. Stuber, Guy F. Sutton, Ben Swallow, Conor Claverie Taff, Elina Takola, Andrew J. Tanentzap, Rocío Tarjuelo, Richard J. Telford, Christopher J. Thawley, Hugo Thierry, Jacqueline Thomson, Svenja Tidau, Emily M. Tompkins, Claire Marie Tortorelli, Andrew Trlica, Biz R. Turnell, Lara Urban, Stijn Van de Vondel, Jessica Eva Megan van der Wal, Jens Van Eeckhoven, Francis van Oordt, K. Michelle Vanderwel, Mark C. Vanderwel, Karen J. Vanderwolf, Juliana Vélez, Diana Carolina Vergara-Florez, Brian C. Verrelli, Marcus Vinícius Vieira, Nora Villamil, Valerio Vitali, Julien Vollering, Jeffrey Walker, Xanthe J. Walker, Jonathan A. Walter, Pawel Waryszak, Ryan J. Weaver, Ronja E. M. Wedegärtner, Daniel L. Weller, Shannon Whelan, Rachel Louise White, David William Wolfson, Andrew Wood, Scott W. Yanco, Jian D. L. Yen, Casey Youngflesh, Giacomo Zilio, Cédric Zimmer, Gregory Mark Zimmerman, Rachel A. Zitomer

Source: BMC Biology, Vol 23, Iss 1, Pp 1-36 (2025)

Subject Terms: Analytical heterogeneity, Metascience, Many-analyst, Replication crisis, Reproducibility, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/de5863fbbfd4411f8ee09e352a483284

Single-Photon Detectors for Quantum Integrated Photonics

Authors: Thu Ha Dao, Francesco Amanti, Greta Andrini, Fabrizio Armani, Fabrizio Barbato, Vittorio Bellani, Vincenzo Bonaiuto, Simone Cammarata, Matteo Campostrini, Samuele Cornia, Fabio De Matteis, Valeria Demontis, Giovanni Di Giuseppe, Sviatoslav Ditalia Tchernij, Simone Donati, Andrea Fontana, Jacopo Forneris, Roberto Francini, Luca Frontini, Gian Carlo Gazzadi, Roberto Gunnella, Ali Emre Kaplan, Cosimo Lacava, Valentino Liberali, Leonardo Martini, Francesco Marzioni, Claudia Menozzi, Elena Nieto Hernández, Elena Pedreschi, Paolo Piergentili, Paolo Prosposito, Valentino Rigato, Carlo Roncolato, Francesco Rossella, Matteo Salvato, Fausto Sargeni, Jafar Shojaii, Franco Spinella, Alberto Stabile, Alessandra Toncelli, Gabriella Trucco, Valerio Vitali

Source: Photonics, Vol 12, Iss 1, p 8 (2024)

Subject Terms: quantum information, integrated photonics, single-photon detectors, Applied optics. Photonics, TA1501-1820

File Description: electronic resource

Relation: https://www.mdpi.com/2304-6732/12/1/8; https://doaj.org/toc/2304-6732

Access URL: https://doaj.org/article/3994a24e72214efa8f37bf4ad8dfd722

Mechanical dicing of optical quality facets and waveguides in a silicon nitride platform

Authors: Paul C Gow, Glenn M Churchill, Valerio Vitali, Thalia Dominguez Bucio, Frederic Y Gardes, Matthew P D'Souza, Periklis Petropoulos, Corin B E Gawith, James C Gates

Source: Electronics Letters, Vol 60, Iss 5, Pp n/a-n/a (2024)

Subject Terms: micromachining, optical fabrication, photonics, sawing machines, surface roughness, waveguides, Electrical engineering. Electronics. Nuclear engineering, TK1-9971

File Description: electronic resource

Relation: https://doaj.org/toc/0013-5194; https://doaj.org/toc/1350-911X

Access URL: https://doaj.org/article/ece7d56b131d461d988726b44338c899

Integrated Photonic Passive Building Blocks on Silicon-on-Insulator Platform

Authors: Francesco Amanti, Greta Andrini, Fabrizio Armani, Fabrizio Barbato, Vittorio Bellani, Vincenzo Bonaiuto, Simone Cammarata, Matteo Campostrini, Thu Ha Dao, Fabio De Matteis, Valeria Demontis, Simone Donati, Giovanni Di Giuseppe, Sviatoslav Ditalia Tchernij, Andrea Fontana, Jacopo Forneris, Luca Frontini, Roberto Gunnella, Simone Iadanza, Ali Emre Kaplan, Cosimo Lacava, Valentino Liberali, Leonardo Martini, Francesco Marzioni, Luca Morescalchi, Elena Pedreschi, Paolo Piergentili, Domenic Prete, Valentino Rigato, Carlo Roncolato, Francesco Rossella, Matteo Salvato, Fausto Sargeni, Jafar Shojaii, Franco Spinella, Alberto Stabile, Alessandra Toncelli, Valerio Vitali

Source: Photonics, Vol 11, Iss 6, p 494 (2024)

Subject Terms: silicon-on-insulator, silicon photonics, integrated photonic circuits, optical interconnect, semiconductor, integrated waveguide devices, Applied optics. Photonics, TA1501-1820

File Description: electronic resource

Relation: https://www.mdpi.com/2304-6732/11/6/494; https://doaj.org/toc/2304-6732

Access URL: https://doaj.org/article/5b5bc252f2ae45e29ed986d5dce3905a

Hybrid Integrated Silicon Photonics Based on Nanomaterials

Authors: Domenic Prete, Francesco Amanti, Greta Andrini, Fabrizio Armani, Vittorio Bellani, Vincenzo Bonaiuto, Simone Cammarata, Matteo Campostrini, Samuele Cornia, Thu Ha Dao, Fabio De Matteis, Valeria Demontis, Giovanni Di Giuseppe, Sviatoslav Ditalia Tchernij, Simone Donati, Andrea Fontana, Jacopo Forneris, Roberto Francini, Luca Frontini, Gian Carlo Gazzadi, Roberto Gunnella, Simone Iadanza, Ali Emre Kaplan, Cosimo Lacava, Valentino Liberali, Leonardo Martini, Francesco Marzioni, Claudia Menozzi, Elena Nieto Hernández, Elena Pedreschi, Paolo Piergentili, Paolo Prosposito, Valentino Rigato, Carlo Roncolato, Francesco Rossella, Andrea Salamon, Matteo Salvato, Fausto Sargeni, Jafar Shojaii, Franco Spinella, Alberto Stabile, Alessandra Toncelli, Gabriella Trucco, Valerio Vitali

Source: Photonics, Vol 11, Iss 5, p 418 (2024)

Subject Terms: integrated silicon photonics, nanostructured materials, hybrid photonic platforms, integrated photonic circuits, Applied optics. Photonics, TA1501-1820

File Description: electronic resource

Relation: https://www.mdpi.com/2304-6732/11/5/418; https://doaj.org/toc/2304-6732

Access URL: https://doaj.org/article/9afc8621ebc7455fa03696f3c5e91b99

Highly efficient dual-level grating couplers for silicon nitride photonics

Authors: Valerio Vitali, Cosimo Lacava, Thalía Domínguez Bucio, Frederic Y. Gardes, Periklis Petropoulos

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-12 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/5ea5ba14f2ae450687b81ecbe9ce053f

Solid-State Color Centers for Single-Photon Generation

Authors: Greta Andrini, Francesco Amanti, Fabrizio Armani, Vittorio Bellani, Vincenzo Bonaiuto, Simone Cammarata, Matteo Campostrini, Thu Ha Dao, Fabio De Matteis, Valeria Demontis, Giovanni Di Giuseppe, Sviatoslav Ditalia Tchernij, Simone Donati, Andrea Fontana, Jacopo Forneris, Roberto Francini, Luca Frontini, Roberto Gunnella, Simone Iadanza, Ali Emre Kaplan, Cosimo Lacava, Valentino Liberali, Francesco Marzioni, Elena Nieto Hernández, Elena Pedreschi, Paolo Piergentili, Domenic Prete, Paolo Prosposito, Valentino Rigato, Carlo Roncolato, Francesco Rossella, Andrea Salamon, Matteo Salvato, Fausto Sargeni, Jafar Shojaii, Franco Spinella, Alberto Stabile, Alessandra Toncelli, Gabriella Trucco, Valerio Vitali

Source: Photonics, Vol 11, Iss 2, p 188 (2024)

Subject Terms: color centers, solid state, diamond, silicon carbide, hBN, nitrides, Applied optics. Photonics, TA1501-1820

File Description: electronic resource

Relation: https://www.mdpi.com/2304-6732/11/2/188; https://doaj.org/toc/2304-6732

Access URL: https://doaj.org/article/974a6b2d832b4643aa2adb9a5869e5e8

Quantum Information with Integrated Photonics

Authors: Paolo Piergentili, Francesco Amanti, Greta Andrini, Fabrizio Armani, Vittorio Bellani, Vincenzo Bonaiuto, Simone Cammarata, Matteo Campostrini, Samuele Cornia, Thu Ha Dao, Fabio De Matteis, Valeria Demontis, Giovanni Di Giuseppe, Sviatoslav Ditalia Tchernij, Simone Donati, Andrea Fontana, Jacopo Forneris, Roberto Francini, Luca Frontini, Roberto Gunnella, Simone Iadanza, Ali Emre Kaplan, Cosimo Lacava, Valentino Liberali, Francesco Marzioni, Elena Nieto Hernández, Elena Pedreschi, Domenic Prete, Paolo Prosposito, Valentino Rigato, Carlo Roncolato, Francesco Rossella, Andrea Salamon, Matteo Salvato, Fausto Sargeni, Jafar Shojaii, Franco Spinella, Alberto Stabile, Alessandra Toncelli, Gabriella Trucco, Valerio Vitali

Source: Applied Sciences, Vol 14, Iss 1, p 387 (2023)

Subject Terms: quantum information, quantum computation, integrated photonics, quantum processors, quantum technologies, Technology, Engineering (General). Civil engineering (General), TA1-2040, Biology (General), QH301-705.5, Physics, QC1-999, Chemistry, QD1-999

File Description: electronic resource

Relation: https://www.mdpi.com/2076-3417/14/1/387; https://doaj.org/toc/2076-3417

Access URL: https://doaj.org/article/c9cd67399b7e41d2b5f53c181eb55839

Multi-frequency passive and active microrheology with optical tweezers

Authors: Randhir Kumar, Valerio Vitali, Timo Wiedemann, Robert Meissner, Paolo Minzioni, Cornelia Denz

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/129b28a33ff2445fb75fc4987c114cb4

Long-Term Cardiovascular Outcome in Children with MIS-C Linked to SARS-CoV-2 Infection—An Italian Multicenter Experience

Authors: Nicoletta Cantarutti, Virginia Battista, Nicola Stagnaro, Marianna Eleonora Labate, Marianna Cicenia, Marta Campisi, Valerio Vitali, Aurelio Secinaro, Andrea Campana, Gianluca Trocchio, Fabrizio Drago

Source: Biology, Vol 11, Iss 10, p 1474 (2022)

Subject Terms: MIS-C, SARS-CoV-2, cardiovascular outcome, children, pediatric, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2079-7737/11/10/1474; https://doaj.org/toc/2079-7737

Access URL: https://doaj.org/article/5bb5ed6b21fc4012992df02b35a095fd

Polarization Control in Integrated Silicon Waveguides Using Semiconductor Nanowires

Authors: Ali Emre Kaplan, Valerio Vitali, Valeria Demontis, Francesco Rossella, Andrea Fontana, Samuele Cornia, Periklis Petropoulos, Vittorio Bellani, Cosimo Lacava, Ilaria Cristiani

Source: Nanomaterials, Vol 12, Iss 14, p 2438 (2022)

Subject Terms: integrated photonics, polarization control, silicon photonics, nanowires, Chemistry, QD1-999

File Description: electronic resource

Relation: https://www.mdpi.com/2079-4991/12/14/2438; https://doaj.org/toc/2079-4991

Access URL: https://doaj.org/article/3edfffe3e31f486d9e506fc65ed07f61

Cross-Generational Effects and Non-random Developmental Response to Temperature Variation in Paramecium

Authors: Rebecca Hagen, Valerio Vitali, Francesco Catania

Source: Frontiers in Cell and Developmental Biology, Vol 8 (2020)

Subject Terms: programmed DNA elimination, adaptive developmental plasticity, temperature, genome evolution, Paramecium, intergenerational effects, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcell.2020.584219/full; https://doaj.org/toc/2296-634X

Access URL: https://doaj.org/article/3056ffeee5234f71bfd259cba7d3e73d

A Review of Capabilities and Scope for Hybrid Integration Offered by Silicon-Nitride-Based Photonic Integrated Circuits

Authors: Frederic Gardes, Afrooz Shooa, Greta De Paoli, Ilias Skandalos, Stefan Ilie, Teerapat Rutirawut, Wanvisa Talataisong, Joaquín Faneca, Valerio Vitali, Yaonan Hou, Thalía Domínguez Bucio, Ioannis Zeimpekis, Cosimo Lacava, Periklis Petropoulos

Source: Sensors, Vol 22, Iss 11, p 4227 (2022)

Subject Terms: silicon nitride, modulation, nonlinear photonics, laser integration, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://www.mdpi.com/1424-8220/22/11/4227; https://doaj.org/toc/1424-8220

Access URL: https://doaj.org/article/ab4fcbea4c22431ba033401c3a9781a1

Fifty Generations of Amitosis: Tracing Asymmetric Allele Segregation in Polyploid Cells with Single-Cell DNA Sequencing

Authors: Valerio Vitali, Rebecca Rothering, Francesco Catania

Source: Microorganisms, Vol 9, Iss 9, p 1979 (2021)

Subject Terms: amitosis, single-cell DNA sequencing, developmental plasticity, somatic mutations, polyploidy, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/9/9/1979; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/539b844897624dfcb48aaa0adca1a78c

Low-Loss Micro-Resonator Filters Fabricated in Silicon by CMOS-Compatible Lithographic Techniques: Design and Characterization

Authors: Riccardo Marchetti, Valerio Vitali, Cosimo Lacava, Ilaria Cristiani, Guido Giuliani, Viviane Muffato, Maryse Fournier, Silvio Abrate, Roberto Gaudino, Enrico Temporiti, Lee Carroll, Paolo Minzioni

Source: Applied Sciences, Vol 7, Iss 2, p 174 (2017)

Subject Terms: Silicon photonics, Micro-rings, integrated filters, optical losses, optical components, integrated waveguides, Technology, Engineering (General). Civil engineering (General), TA1-2040, Biology (General), QH301-705.5, Physics, QC1-999, Chemistry, QD1-999

File Description: electronic resource

Relation: http://www.mdpi.com/2076-3417/7/2/174; https://doaj.org/toc/2076-3417

Access URL: https://doaj.org/article/b4ef6fb9143048c3bbe6b021255decc4

Integrated Optofluidic Chip for Low-Volume Fluid Viscosity Measurement

Authors: Tie Yang, Giovanni Nava, Valerio Vitali, Francesca Bragheri, Roberto Osellame, Tommaso Bellini, Ilaria Cristiani, Paolo Minzioni

Source: Micromachines, Vol 8, Iss 3, p 65 (2017)

Subject Terms: optofluidics, viscosity, microfluidics, optical forces, optical shooting, Mechanical engineering and machinery, TJ1-1570

File Description: electronic resource

Relation: http://www.mdpi.com/2072-666X/8/3/65; https://doaj.org/toc/2072-666X

Access URL: https://doaj.org/article/b17b3f82350c4c02b330a9ab14d00cad

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