Accelerating Data Processing and Benchmarking of AI Models for Pathology

Authors: Zhang, Andrew, Jaume, Guillaume, Vaidya, Anurag, Ding, Tong, Mahmood, Faisal

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2502.06750

Molecular-driven Foundation Model for Oncologic Pathology

Authors: Vaidya, Anurag, Zhang, Andrew, Jaume, Guillaume, Song, Andrew H., Ding, Tong, Wagner, Sophia J., Lu, Ming Y., Doucet, Paul, Robertson, Harry, Almagro-Perez, Cristina, Chen, Richard J., ElHarouni, Dina, Ayoub, Georges, Bossi, Connor, Ligon, Keith L., Gerber, Georg, Le, Long Phi, Mahmood, Faisal

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2501.16652

Transcriptomics-Guided Slide Representation Learning in Computational Pathology

Authors: Jaume, Guillaume, Oldenburg, Lukas, Vaidya, Anurag, Chen, Richard J., Williamson, Drew F.K., Peeters, Thomas, Song, Andrew H., Mahmood, Faisal

Source: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) CVPR Computer Vision and Pattern Recognition (CVPR), 2024 IEEE/CVF Conference on. :9632-9644 Jun, 2024

Relation: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)

Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction

Authors: Jaume, Guillaume, Vaidya, Anurag, Chen, Richard J., Williamson, Drew F.K., Liang, Paul Pu, Mahmood, Faisal

Source: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) CVPR Computer Vision and Pattern Recognition (CVPR), 2024 IEEE/CVF Conference on. :11579-11590 Jun, 2024

Relation: 2024 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)

Multimodal Whole Slide Foundation Model for Pathology

Authors: Ding, Tong, Wagner, Sophia J., Song, Andrew H., Chen, Richard J., Lu, Ming Y., Zhang, Andrew, Vaidya, Anurag J., Jaume, Guillaume, Shaban, Muhammad, Kim, Ahrong, Williamson, Drew F. K., Chen, Bowen, Almagro-Perez, Cristina, Doucet, Paul, Sahai, Sharifa, Chen, Chengkuan, Komura, Daisuke, Kawabe, Akihiro, Ishikawa, Shumpei, Gerber, Georg, Peng, Tingying, Le, Long Phi, Mahmood, Faisal

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Artificial Intelligence, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning, Statistics - Applications

Access URL: http://arxiv.org/abs/2411.19666

E-Navigation: The Boon for Visually Impaired

Authors: Patil, Leena H., Dahale, Nikhil P., Thakare, Atul L., Fursule, Sumit S., Vaidya, Anurag V.

Source: 2024 IEEE International Students' Conference on Electrical, Electronics and Computer Science (SCEECS) Electrical, Electronics and Computer Science (SCEECS), 2024 IEEE International Students' Conference on. :1-8 Feb, 2024

Relation: 2024 IEEE International Students' Conference on Electrical, Electronics and Computer Science (SCEECS)

Multistain Pretraining for Slide Representation Learning in Pathology

Authors: Jaume, Guillaume, Vaidya, Anurag, Zhang, Andrew, Song, Andrew H., Chen, Richard J., Sahai, Sharifa, Mo, Dandan, Madrigal, Emilio, Le, Long Phi, Mahmood, Faisal

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Artificial Intelligence, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2408.02859

Composable Interventions for Language Models

Authors: Kolbeinsson, Arinbjorn, O'Brien, Kyle, Huang, Tianjin, Gao, Shanghua, Liu, Shiwei, Schwarz, Jonathan Richard, Vaidya, Anurag, Mahmood, Faisal, Zitnik, Marinka, Chen, Tianlong, Hartvigsen, Thomas

Subject Terms: Computer Science - Machine Learning, Computer Science - Computation and Language

Access URL: http://arxiv.org/abs/2407.06483

Multimodal Prototyping for cancer survival prediction

Authors: Song, Andrew H., Chen, Richard J., Jaume, Guillaume, Vaidya, Anurag J., Baras, Alexander S., Mahmood, Faisal

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Statistics - Applications

Access URL: http://arxiv.org/abs/2407.00224

HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis

Authors: Jaume, Guillaume, Doucet, Paul, Song, Andrew H., Lu, Ming Y., Almagro-Pérez, Cristina, Wagner, Sophia J., Vaidya, Anurag J., Chen, Richard J., Williamson, Drew F. K., Kim, Ahrong, Mahmood, Faisal

Subject Terms: Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2406.16192

Artificial Intelligence for Digital and Computational Pathology

Authors: Song, Andrew H., Jaume, Guillaume, Williamson, Drew F. K., Lu, Ming Y., Vaidya, Anurag, Miller, Tiffany R., Mahmood, Faisal

Source: Nature Reviews Bioengineering 2023

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Artificial Intelligence, Computer Science - Computer Vision and Pattern Recognition, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2401.06148

A General-Purpose Self-Supervised Model for Computational Pathology

Authors: Chen, Richard J., Ding, Tong, Lu, Ming Y., Williamson, Drew F. K., Jaume, Guillaume, Chen, Bowen, Zhang, Andrew, Shao, Daniel, Song, Andrew H., Shaban, Muhammad, Williams, Mane, Vaidya, Anurag, Sahai, Sharifa, Oldenburg, Lukas, Weishaupt, Luca L., Wang, Judy J., Williams, Walt, Le, Long Phi, Gerber, Georg, Mahmood, Faisal

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence, Quantitative Biology - Tissues and Organs

Access URL: http://arxiv.org/abs/2308.15474

Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction

Authors: Jaume, Guillaume, Vaidya, Anurag, Chen, Richard, Williamson, Drew, Liang, Paul, Mahmood, Faisal

Subject Terms: Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence, Quantitative Biology - Genomics, Quantitative Biology - Quantitative Methods, Quantitative Biology - Tissues and Organs

Access URL: http://arxiv.org/abs/2304.06819

Artificial intelligence for multimodal data integration in oncology

Authors: Lipkova, Jana, Chen, Richard J., Chen, Bowen, Lu, Ming Y., Barbieri, Matteo, Shao, Daniel, Vaidya, Anurag J., Chen, Chengkuan, Zhuang, Luoting, Williamson, Drew F.K., Shaban, Muhammad, Chen, Tiffany Y., Mahmood, Faisal

Source: In Cancer Cell 10 October 2022 40(10):1095-1110

Anisotropic and viscoelastic tensile mechanical properties of aponeurosis: Experimentation, modeling, and tissue microstructure

Authors: Grega, Keith L., Segall, Ruth N., Vaidya, Anurag J., Fu, Chong, Wheatley, Benjamin B.

Source: In Journal of the Mechanical Behavior of Biomedical Materials October 2020 110

Perceptually improved T1-T2 MRI translations using conditional generative adversarial networks
Medical Imaging 2022: Image Processing

Authors: Vaidya, Anurag, Stough, Joshua V., Patel, Aalpen A.

Source: Proceedings of SPIE, the International Society for Optical Engineering. 12032:120321V-120321V-7

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN900043666&indx=1&recIds=ETOCCN900043666

An experimental and computational investigation of the effects of volumetric boundary conditions on the compressive mechanics of passive skeletal muscle

Authors: Vaidya, Anurag J., Wheatley, Benjamin B.

Source: In Journal of the Mechanical Behavior of Biomedical Materials February 2020 102

Demographic bias in misdiagnosis by computational pathology models

Authors: Vaidya, Anurag, Chen, Richard J., Williamson, Drew F. K., Song, Andrew H., Jaume, Guillaume, Yang, Yuzhe, Hartvigsen, Thomas, Dyer, Emma C., Lu, Ming Y., Lipkova, Jana, Shaban, Muhammad, Chen, Tiffany Y., Mahmood, Faisal

Source: Nature Medicine; April 2024, Vol. 30 Issue: 4 p1174-1190, 17p

Towards a general-purpose foundation model for computational pathology

Authors: Chen, Richard J., Ding, Tong, Lu, Ming Y., Williamson, Drew F. K., Jaume, Guillaume, Song, Andrew H., Chen, Bowen, Zhang, Andrew, Shao, Daniel, Shaban, Muhammad, Williams, Mane, Oldenburg, Lukas, Weishaupt, Luca L., Wang, Judy J., Vaidya, Anurag, Le, Long Phi, Gerber, Georg, Sahai, Sharifa, Williams, Walt, Mahmood, Faisal

Source: Nature Medicine; March 2024, Vol. 30 Issue: 3 p850-862, 13p

Perceptually improved T1-T2 MRI translations using conditional generative adversarial networks

Authors: Colliot, Olivier, Išgum, Ivana, Vaidya, Anurag, Stough, Joshua V., Patel, Aalpen A.

Source: Proceedings of SPIE; April 2022, Vol. 12032 Issue: 1 p120321V-120321V-7, 1082897p