Rational design of thermophilic CYP119 for progesterone hydroxylation by in silico mutagenesis and docking screening

Authors: Doğru, Ekin Kestevur, Güralp, Gülce, Uyar, Arzu, Surmeli, Nur Basak

Source: In Journal of Molecular Graphics and Modelling January 2023 118

Identification and Characterization of Two Structurally Related Dipeptides that Enhance Catalytic Efficiency of Neurolysin

Authors: Jayaraman, Srinidhi ¹, Kocot, Joanna ¹, Esfahani, Shiva Hadi ¹, Wangler, Naomi J., Uyar, Arzu, Mechref, Yehia, Trippier, Paul C., Abbruscato, Thomas J., Dickson, Alex, Aihara, Hideki, Ostrov, David A., Karamyan, Vardan T. ^*

Source: In The Journal of Pharmacology and Experimental Therapeutics November 2021 379(2):191-202

Membrane-Mediated Ligand Unbinding of the PK-11195 Ligand from TSPO

Authors: Dixon, Tom, Uyar, Arzu, Ferguson-Miller, Shelagh, Dickson, Alex

Source: In Biophysical Journal 5 January 2021 120(1):158-167

Perturbation of ACE2 Structural Ensembles by SARS-CoV-2 Spike Protein Binding

Authors: Uyar, Arzu, Dickson, Alex

Source: JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 17(9):5896-5906

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632738081&indx=1&recIds=ETOCRN632738081

Features of Large Hinge-Bending Conformational Transitions. Prediction of Closed Structure from Open State

Authors: Uyar, Arzu, Kantarci-Carsibasi, Nigar, Haliloglu, Turkan, Doruker, Pemra

Source: In Biophysical Journal 17 June 2014 106(12):2656-2666

Effect of intracellular loop 3 on intrinsic dynamics of human β2-adrenergic receptor.

Authors: Ozcan, Ozer¹ m.ozerozcan@gmail.com, Uyar, Arzu² arzumuyar@gmail.com, Doruker, Pemra² doruker@boun.edu.tr, Akten, Ebru Demet³ demet.akten@khas.edu.tr

Source: BMC Structural Biology. 2013, Vol. 13, p1-33. 33p. 3 Diagrams, 7 Graphs.

Subject Terms: *ENDOENZYMES, *ADRENERGIC receptors, *MOLECULAR dynamics, *G protein coupled receptors, *MOLECULAR docking

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How Does a Ligand Explore the Deep Channel of Neurolysin? A Conformational Dynamics Study with Wexplore and Elastic Network Modeling

Authors: Uyar, Arzu, Karamyan, Vardan, Dickson, Alex

Source: Biophysical journal. 112(3):355a-355a

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100054032050.0x000001&indx=1&recIds=ETOCvdc_100054032050.0x000001

Structural insights into lethal contractural syndrome type 3 (LCCS3) caused by a missense mutation of PIP5Kγ.

Authors: Xuankun Zeng, Uyar, Arzu, Dexin Sui, Donyapour, Nazanin, Dianqing Wu, Dickson, Alex, Jian Hu

Source: Biochemical Journal; 7/31/2018, Vol. 475 Issue 14, p2257-2269, 13p

Subject Terms: PHOSPHATIDYLINOSITOL 3-kinases, MISSENSE mutation, ASPARTATES, ASPARAGINE, GENETIC disorders

Targeted Conformational Transitions of Multimeric Proteins by Monte Carlo Simulations Combined with Collective Anisotropic Network Model Modes

Authors: Yesiltepe, Yasemin, Uyar, Arzu, Turgut, Deniz, Haliloglu, Turkan, Doruker, Pemra, Ozisik, Rahmi

Source: In Biophysical Journal 27 January 2015 108(2) Supplement 1:211a-211a

Assessing Dynamic Features of NF-κB via Molecular Dynamics Simulations and Elastic Network Model

Authors: Uyar, Arzu, Pande, Vineet, Mura, Cameron, McCammon, J. Andrew, Doruker, Pemra, Nilsson, Lennart

Source: In Biophysical Journal 28 January 2014 106(2) Supplement 1:252a-252a

Effect of Intracellular Loop 3 on Intrinsic Dynamics of Human β2-Adrenergic Receptor

Authors: Ozcan, Ozer, Uyar, Arzu, Doruker, Pemra, Akten, Ebru Demet

Source: In Biophysical Journal 28 January 2014 106(2) Supplement 1:53a-53a

The Perceptions of Entrepreneurs on the Strategic Role of Human Resource Management

Authors: Uyar, Arzu Safak, Deniz, Nevin

Source: Procedia Social and Behavioral Sciences; October 2012, Vol. 58 Issue: 1 p914-923, 10p

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