Roaming the Seas—Assessing Marine Invertebrate Biodiversity Along Salinity Gradients With Zooplankton and eDNA Metabarcoding

Authors: Alica Ohnesorge, Uwe John, Lucie Kuczynski, Stefan Neuhaus, Kingsly Chuo Beng, Bernd Krock, Silke Laakmann

Source: Environmental DNA, Vol 6, Iss 6, Pp n/a-n/a (2024)

Subject Terms: biodiversity, marine fauna, spatial resolution, zooplankton, Environmental sciences, GE1-350, Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2637-4943

Access URL: https://doaj.org/article/2b32b77c3dcc4e5cb4944ae30846c6a7

Biogeographic gradients of picoplankton diversity indicate increasing dominance of prokaryotes in warmer Arctic fjords

Authors: Cora Hörstmann, Tore Hattermann, Pauline C. Thomé, Pier Luigi Buttigieg, Isidora Morel, Anya M. Waite, Uwe John

Source: Communications Biology, Vol 7, Iss 1, Pp 1-11 (2024)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/2e5b91d5c0d74ccabafdb08db9ea889e

Multiannual patterns of genetic structure and mating type ratios highlight the complex bloom dynamics of a marine planktonic diatom

Authors: Maria Valeria Ruggiero, Marina Buffoli, Klara K. E. Wolf, Domenico D’Alelio, Viviana Di Tuccio, Ernestina Lombardi, Francesco Manfellotto, Laura Vitale, Francesca Margiotta, Diana Sarno, Uwe John, Maria Immacolata Ferrante, Marina Montresor

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-11 (2024)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/8bc09607af51402b86d001fde10a8624

Biodiversity and Hemolytic Toxicity of the Genus Heterocapsa (Dinophyceae) in the Beibu Gulf, China

Authors: Yixiao Xu, Nina Dzhembekova, Kirsty F. Smith, Haifeng Gu, Uwe John, Huanda Xie, Yujuan Wen, Miao Wu

Source: Marine Drugs, Vol 22, Iss 11, p 514 (2024)

Subject Terms: phylogeny, taxonomy, toxicity, erythrocyte lysis assay, dinoflagellate, harmful algal blooms, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/1660-3397/22/11/514; https://doaj.org/toc/1660-3397

Access URL: https://doaj.org/article/987856da6ef74f1baeca5cc67cc4a6cb

Multi-omics analysis reveals the molecular response to heat stress in a 'red tide' dinoflagellate

Authors: Katherine E. Dougan, Zhi-Luo Deng, Lars Wöhlbrand, Carsten Reuse, Boyke Bunk, Yibi Chen, Juliane Hartlich, Karsten Hiller, Uwe John, Jana Kalvelage, Johannes Mansky, Meina Neumann-Schaal, Jörg Overmann, Jörn Petersen, Selene Sanchez-Garcia, Kerstin Schmidt-Hohagen, Sarah Shah, Cathrin Spröer, Helena Sztajer, Hui Wang, Debashish Bhattacharya, Ralf Rabus, Dieter Jahn, Cheong Xin Chan, Irene Wagner-Döbler

Source: Genome Biology, Vol 24, Iss 1, Pp 1-32 (2023)

Subject Terms: Genome evolution, Molecular regulation, Molecular response, Dinoflagellates, Harmful algal bloom, Heat stress, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/65fbf1cee7a54eda8ad277e1b2f154db

Transition from a mixotrophic/heterotrophic protist community during the dark winter to a photoautotrophic spring community in surface waters of Disko Bay, Greenland

Authors: Claudia Sabine Bruhn, Nina Lundholm, Per Juel Hansen, Sylke Wohlrab, Uwe John

Source: Frontiers in Microbiology, Vol 15 (2024)

Subject Terms: sea ice, succession patterns, metabarcoding, spring bloom formation, parasites, functional diversity, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1407888/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/986581eef0f4448e9df513f4a605d3bc

Dataset from RNAseq analysis of differential gene expression among developmental stages of two non-marine ostracodes

Authors: Miguel Vences, Sten Anslan, Joana Sabino-Pinto, Mauricio Bonilla-Flores, Paula Echeverría-Galindo, Uwe John, Benneth Nass, Liseth Pérez, Michaela Preick, Liping Zhu, Antje Schwalb

Source: Data in Brief, Vol 53, Iss , Pp 110070- (2024)

Subject Terms: Ostracoda, Dolerocypris, Heterocypris, Transcriptomics, Phylogenomics, Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S235234092400043X; https://doaj.org/toc/2352-3409

Access URL: https://doaj.org/article/313e2714042d492e9a2fc11da450cf3c

Community dynamics and co-occurrence relationships of pelagic ciliates and their potential prey at a coastal and an offshore station in the ultra-oligotrophic Eastern Mediterranean Sea

Authors: Filomena Romano, Paraskevi Pitta, Uwe John

Source: Frontiers in Genetics, Vol 14 (2023)

Subject Terms: barcoding, DNA, mixotrophy, network analysis, prey-predator, vertical/temporal distribution, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2023.1219085/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/c1f51d19e5844a429b147699c5334add

Towards quantitative metabarcoding of eukaryotic plankton: an approach to improve 18S rRNA gene copy number bias

Authors: Jon Lapeyra Martin, Ioulia Santi, Paraskevi Pitta, Uwe John, Nathalie Gypens

Source: Metabarcoding and Metagenomics, Vol 6, Iss , Pp 245-259 (2022)

Subject Terms: Ecology, QH540-549.5

File Description: electronic resource

Relation: https://mbmg.pensoft.net/article/85794/download/pdf/; https://mbmg.pensoft.net/article/85794/download/xml/; https://mbmg.pensoft.net/article/85794/; https://doaj.org/toc/2534-9708

Access URL: https://doaj.org/article/7348a627bc6243dfaa02125cf89aabe7

Intracellular nitrate storage by diatoms can be an important nitrogen pool in freshwater and marine ecosystems

Authors: Peter Stief, Clemens Schauberger, Marie B. Lund, Andreas Greve, Raeid M. M. Abed, Mohammad A. A. Al-Najjar, Karl Attard, Stefano Bonaglia, Jörg S. Deutzmann, Belén Franco-Cisterna, Emilio García-Robledo, Moritz Holtappels, Uwe John, Adele Maciute, Michael J. Magee, Rie Pors, Tina Santl-Temkiv, Anja Scherwass, Duygu S. Sevilgen, Dirk de Beer, Ronnie N. Glud, Andreas Schramm, Anja Kamp

Source: Communications Earth & Environment, Vol 3, Iss 1, Pp 1-11 (2022)

Subject Terms: Geology, QE1-996.5, Environmental sciences, GE1-350

File Description: electronic resource

Relation: https://doaj.org/toc/2662-4435

Access URL: https://doaj.org/article/77ba71e956da4278b9c261cbf22af504

The evolution of convex trade-offs enables the transition towards multicellularity

Authors: Joana P. Bernardes, Uwe John, Noemi Woltermann, Martha Valiadi, Ruben J. Hermann, Lutz Becks

Source: Nature Communications, Vol 12, Iss 1, Pp 1-9 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/113fc50981134fb7af1649d55e407fbd

A dataset on trophic modes of aquatic protists

Authors: Lisa Schneider, Konstantinos Anestis, Joost Mansour, Anna Anschütz, Nathalie Gypens, Per Hansen, Uwe John, Kerstin Klemm, Jon Martin, Nikola Medic, Fabrice Not, Willem Stolte

Source: Biodiversity Data Journal, Vol 8, Iss , Pp 1-13 (2020)

Subject Terms: aquatic protists, phytoplankton, protozooplankton, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://bdj.pensoft.net/article/56648/download/pdf/; https://bdj.pensoft.net/article/56648/download/xml/; https://bdj.pensoft.net/article/56648/; https://doaj.org/toc/1314-2828

Access URL: https://doaj.org/article/b799136fdb9041d0a8a2abff646828f8

Fantastic Beasts: Unfolding Mixoplankton Temporal Variability in the Belgian Coastal Zone Through DNA-Metabarcoding

Authors: Jon Lapeyra Martin, Uwe John, Colin Royer, Nathalie Gypens

Source: Frontiers in Marine Science, Vol 9 (2022)

Subject Terms: North Sea, 18S (SSU) rRNA gene, mixotrophy, seasonal succession, time-series, protists, Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmars.2022.786787/full; https://doaj.org/toc/2296-7745

Access URL: https://doaj.org/article/cf330003e79c430abaadb376b22d5085

Phylogeography and Diversity Among Populations of the Toxigenic Benthic Dinoflagellate Prorocentrum From Coastal Reef Systems in Mexico

Authors: Allan D. Cembella, Lorena M. Durán-Riveroll, Ulrike I. Tarazona-Janampa, Yuri B. Okolodkov, Ricardo García-Sandoval, Bernd Krock, Cora Hörstmann, Uwe John

Source: Frontiers in Marine Science, Vol 8 (2021)

Subject Terms: Prorocentrum lima, species complex, epibenthic dinoflagellates, diarrheic shellfish poisoning, polyether toxins, rDNA variation, Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmars.2021.716669/full; https://doaj.org/toc/2296-7745

Access URL: https://doaj.org/article/47b8a6b715f643258224f945c98e1e41

Expression of calcification‐related ion transporters during blue mussel larval development

Authors: Kirti Ramesh, Tejaswi Yarra, Melody S. Clark, Uwe John, Frank Melzner

Source: Ecology and Evolution, Vol 9, Iss 12, Pp 7157-7172 (2019)

Subject Terms: biomineralization, bivalves, gene expression, larvae, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7758

Access URL: https://doaj.org/article/ba6a9db950c14d9b81ec5487aab8257e

Concepts towards Functional Eukaryotic Microbial Biogeography in the Ocean

Authors: Cora Hoerstmann, Sylke Wohlrab, Uwe John

Source: Journal of Marine Science and Engineering, Vol 10, Iss 11, p 1730 (2022)

Subject Terms: sequencing technologies, metabarcoding, metagenomics, metatranscriptomics, Naval architecture. Shipbuilding. Marine engineering, VM1-989, Oceanography, GC1-1581

File Description: electronic resource

Relation: https://www.mdpi.com/2077-1312/10/11/1730; https://doaj.org/toc/2077-1312

Access URL: https://doaj.org/article/f2fbe728295e47dca7781573b832343f

Retention of Prey Genetic Material by the Kleptoplastidic Ciliate Strombidium cf. basimorphum

Authors: Maira Maselli, Konstantinos Anestis, Kerstin Klemm, Per Juel Hansen, Uwe John

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: kleptoplasty, ciliates, Strombidium, mixotrophy, plankton, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.694508/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/264e805275aa467caf8f5af79d15628f

Genomic and Transcriptomic Differentiation of Independent Invasions of the Pacific Oyster Crassostrea gigas

Authors: K. Mathias Wegner, Ana Lokmer, Uwe John

Source: Frontiers in Ecology and Evolution, Vol 8 (2020)

Subject Terms: biological invasion, genomics, genetic differentiation, FST outlier, adaptation, gene expression, Evolution, QH359-425, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fevo.2020.567049/full; https://doaj.org/toc/2296-701X

Access URL: https://doaj.org/article/d31369b1246b45a0b21a72027f67c729

Comparative Metabarcoding and Metatranscriptomic Analysis of Microeukaryotes Within Coastal Surface Waters of West Greenland and Northwest Iceland

Authors: Stephanie Elferink, Sylke Wohlrab, Stefan Neuhaus, Allan Cembella, Lars Harms, Uwe John

Source: Frontiers in Marine Science, Vol 7 (2020)

Subject Terms: arctic microplankton, DNA-barcoding, metabolic processes, microeukaryotic community, marine pelagic community, picoplankton, Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmars.2020.00439/full; https://doaj.org/toc/2296-7745

Access URL: https://doaj.org/article/31a6736b1199427fa9a76b8d1b3cd2c0

Daphnia galeata responds to the exposure to an ichthyosporean gut parasite by down-regulation of immunity and lipid metabolism

Authors: Yameng Lu, Paul R. Johnston, Stuart R. Dennis, Michael T. Monaghan, Uwe John, Piet Spaak, Justyna Wolinska

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-10 (2018)

Subject Terms: Daphnia, Differential expression, Host-parasite interaction, Immune response, RNAseq, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-5312-7; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/5419ce844a7e4a1ba356f543b118cf23