A Generalized Attraction—Repulsion Potential and Revisited Fragment Library Improves PEP-FOLD Peptide Structure Prediction

Authors: Binette, Vincent, Mousseau, Normand, Tuffery, Pierre

Source: JOURNAL OF CHEMICAL THEORY AND COMPUTATION. 18(4):2720-2736

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632741791&indx=1&recIds=ETOCRN632741791

Isolation of Primary Hepatocytes for Testing Tumor Penetrating Peptides

Authors: Savier, Eric, Tuffery, Pierre, Bruzzoni-Giovanelli, Heriberto, Rebollo, Angelita

Source: Methods in molecular biology. 2383:413-428

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN627945405&indx=1&recIds=ETOCRN627945405

An information gain-based approach for evaluating protein structure models

Authors: Postic, Guillaume, Janel, Nathalie, Tufféry, Pierre, Moroy, Gautier

Source: In Computational and Structural Biotechnology Journal 2020 18:2228-2236

The search of sequence variants using a constrained protein evolution simulation approach

Authors: Tufféry, Pierre, de Vries, Sjoerd

Source: In Computational and Structural Biotechnology Journal 2020 18:1790-1799

Bioinformatics Services Discovery Using Ontology Classification

Authors: Menager, Herve, Lacroix, Zoe, Tuffery, Pierre

Source: 2007 IEEE Congress on Services (Services 2007) Services, 2007 IEEE Congress on. :106-113 Jul, 2007

Relation: 2007 IEEE Congress on Services

Coarse‐grained and atomic resolution biomolecular docking with the ATTRACT approach

Authors: Glashagen, Glenn, Vries, Sjoerd, Uciechowska‐Kaczmarzyk, Urszula, Samsonov, Sergey A., Murail, Samuel, Tuffery, Pierre, Zacharias, Martin

Source: Proteins. 88(8):1018-1028

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107630091.0x000001&indx=1&recIds=ETOCvdc_100107630091.0x000001

Probing the quality control mechanism of the Escherichia coli twin-arginine translocase with folding variants of a de novo–designed heme protein

Authors: Sutherland, George A., Grayson, Katie J., Adams, Nathan B.P., Mermans, Daphne M.J., Jones, Alexander S., Robertson, Angus J., Auman, Dirk B., Brindley, Amanda A., Sterpone, Fabio, Tuffery, Pierre ^**, Derreumaux, Philippe, Dutton, P. Leslie, Robinson, Colin, Hitchcock, Andrew, Hunter, C. Neil

Source: In Journal of Biological Chemistry 4 May 2018 293(18):6672-6681

Interfering peptides targeting protein–protein interactions: the next generation of drugs?

Authors: Bruzzoni-Giovanelli, Heriberto, Alezra, Valerie, Wolff, Nicolas, Dong, Chang-Zhi, Tuffery, Pierre, Rebollo, Angelita

Source: In Drug Discovery Today February 2018 23(2):272-285

A Triple-Mutated Allele of Granzyme B Incapable of Inducing Apoptosis

Authors: McIlroy, Dorian, Cartron, Pierre-François, Tuffery, Pierre, Dudoit, Yasmine, Samri, Assia, Autran, Brigitte, Vallette, François M., Debré, Patrice, Theodorou, Ioannis

Source: Proceedings of the National Academy of Sciences of the United States of America, 2003 Mar 01. 100(5), 2562-2567.

Access URL: https://www.jstor.org/stable/3139567

In silico characterization of the interaction between LSKL peptide, a LAP-TGF-beta derived peptide, and ADAMTS1

Authors: Laurent, Marie-Amandine, Bonnier, Dominique, Théret, Nathalie, Tufféry, Pierre, Moroy, Gautier

Source: In Computational Biology and Chemistry April 2016 61:155-161

Peptide Suboptimal Conformation Sampling for the Prediction of Protein-Peptide Interactions

Authors: Lamiable, Alexis, Thévenet, Pierre, Eustache, Stephanie, Saladin, Adrien, Moroy, Gautier, Tuffery, Pierre

Source: Methods in molecular biology. 1561:21-36

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN610263043&indx=1&recIds=ETOCRN610263043

Evolutionarily conserved protein motifs drive interactions between the plant nucleoskeleton and nuclear pores.

Authors: Mermet, Sarah, Voisin, Maxime, Mordier, Joris, Dubos, Tristan, Tutois, Sylvie, Tuffery, Pierre, Baroux, Célia, Tamura, Kentaro, Probst, Aline V, Vanrobays, Emmanuel, Tatout, Christophe

Source: Plant Cell; Dec2023, Vol. 35 Issue 12, p4284-4303, 20p

PEP-FOLD4: a pH-dependent force field for peptide structure prediction in aqueous solution.

Authors: Rey, Julien, Murail, Samuel, de Vries, Sjoerd, Derreumaux, Philippe, Tuffery, Pierre

Source: Nucleic Acids Research; 7/5/2023, Vol. 51 Issue W1, pW432-W437, 6p

Isotype modulates epitope specificity, affinity, and antiviral activities of anti–HIV-1 human broadly neutralizing 2F5 antibody

Authors: Tudor, Daniela, Yu, Huifeng, Maupetit, Julien, Drillet, Anne-Sophie, Bouceba, Tahar, Schwartz-Cornil, Isabelle, Lopalco, Lucia, Tuffery, Pierre, Bomsel, Morgane

Source: Proceedings of the National Academy of Sciences of the United States of America, 2012 Jul . 109(31), 12680-12685.

Access URL: https://www.jstor.org/stable/41685458

In Silico and In Vivo Studies of a Tumor-Penetrating and Interfering Peptide with Antitumoral Effect on Xenograft Models of Breast Cancer.

Authors: Marin, Gustavo H., Murail, Samuel, Andrini, Laura, Garcia, Marcela, Loisel, Severine, Tuffery, Pierre, Rebollo, Angelita

Source: Pharmaceutics; Apr2023, Vol. 15 Issue 4, p1180, 16p

Subject Terms: PEPTIDES, BREAST cancer, HELICAL structure, PROTEIN-protein interactions, DEEP learning

The CH1α domain of mucosal gp41 IgA contributes to antibody specificity and antiviral functions in HIV-1 highly exposed Sero-Negative individuals.

Authors: Khamassi, Marwa^1,2,3, Xu, Lin^1,2,3, Rey, Julien^3,4, Duchemin, Maxence^1,2,3, Bouceba, Tahar⁵, Tuffery, Pierre^3,4, Tudor, Daniela^1,2,3, Bomsel, Morgane^1,2,3, morgane.bomsel@inserm.fr

Source: PLoS Pathogens; 12/14/2020, Vol. 16 Issue 12, p1-28, 28p

Binding and Kinetic Analysis of Human Protein Phosphatase PP2A Interactions with Caspase 9 Protein and the Interfering Peptide C9h.

Authors: Dorgham, Karim, Murail, Samuel, Tuffery, Pierre, Savier, Eric, Bravo, Jeronimo, Rebollo, Angelita

Source: Pharmaceutics; Oct2022, Vol. 14 Issue 10, pN.PAG-N.PAG, 12p

Subject Terms: PEPTIDES, PHOSPHOPROTEIN phosphatases, CASPASES, MOLECULAR dynamics, PROTEIN analysis

A model for the photosystem II reaction center core including the structure of the primary donor P680.

Authors: Svensson, Bengt, Etchebest, Catherine, Tuffery, Pierre

Source: Biochemistry; November 19 1996, Vol. 35, p14486-14502, 17p

aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species

Authors: Tuffery Pierre, Darlu Pierre, Garry Louis, Clermont Olivier, Hoede Claire, Lescat Mathilde, Denamur Erick, Picard Bertrand

Source: BMC Microbiology, Vol 9, Iss 1, p 273 (2009)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2180/9/273; https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/0ca7627c63c24bf29bc932fb793ec675

Ligand scaffold hopping combining 3D maximal substructure search and molecular similarity

Authors: Petitjean Michel, Grynberg Julien, Sperandio Olivier, Quintus Flavien, Tuffery Pierre

Source: BMC Bioinformatics, Vol 10, Iss 1, p 245 (2009)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/10/245; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/cb43d657e9944b148121ef9a4243ddd4