On Colorectal-Cancer Grading Using Fine-Tuning Based Convolutional Neural Networks

Authors: Fujimoto, Daiki, Kamiura, Naotake, Isokawa, Teijiro, Matsui, Nobuyuki, Tsuruyama, Tatsuaki

Source: 2024 Joint 13th International Conference on Soft Computing and Intelligent Systems and 25th International Symposium on Advanced Intelligent Systems (SCIS&ISIS) Soft Computing and Intelligent Systems and 25th International Symposium on Advanced Intelligent Systems (SCIS&ISIS), 2024 Joint 13th International Conference on. :1-6 Nov, 2024

Relation: 2024 Joint 13th International Conference on Soft Computing and Intelligent Systems and 25th International Symposium on Advanced Intelligent Systems (SCIS&ISIS)

Large Deviation Theory Approach to Fluctuation Theorems and Landauer's Principle through Heat Redefinition

Authors: Tsuruyama, Tatsuaki

Subject Terms: Physics - Chemical Physics

Access URL: http://arxiv.org/abs/2410.15725

High-dose radiation preferentially induces the clonal expansion of hematopoietic progenitor cells over mature T and B cells in mouse bone marrow

Authors: Yoshida, Kengo ^{1, ∗}, Misumi, Munechika ², Hamasaki, Kanya ¹, Kyoizumi, Seishi ¹, Satoh, Yasunari ¹, Tsuruyama, Tatsuaki ¹, Uchimura, Arikuni ¹, Kusunoki, Yoichiro ^{1, 3, ∗∗}

Source: In Stem Cell Reports 11 March 2025 20(3)

Cholangiocyte organoids for disease, cancer, and regenerative medicine

Authors: Nagao, Munemasa ^{a, b}, Fukuda, Akihisa ^{a, ⁎}, Kashima, Hirotaka ^a, Matsuyama, Sho ^a, Iimori, Kei ^a, Nakayama, Shinnosuke ^a, Mizukoshi, Kenta ^a, Kawai, Munenori ^a, Yamakawa, Go ^a, Omatsu, Mayuki ^a, Namikawa, Mio ^{a, c}, Masuda, Tomonori ^a, Hiramatsu, Yukiko ^a, Muta, Yu ^a, Maruno, Takahisa ^a, Nakanishi, Yuki ^a, Tsuruyama, Tatsuaki ^d, Seno, Hiroshi ^a

Source: In European Journal of Cell Biology March 2025 104(1)

Proteomic profiling of FFPE specimens: Discovery of HNRNPA2/B1 and STT3B as biomarkers for determining formalin fixation durations

Authors: Kobayashi, Go, Ito, Reiko, Taga, Masataka, Koyama, Kazuaki, Yano, Shiho, Endo, Tatsuya, Kai, Tsutomu, Yamamoto, Takushi, Hiratsuka, Takuya, Tsuruyama, Tatsuaki

Source: In Journal of Proteomics 15 June 2024 301

Formalin-Fixed Paraffin-Embedded Proteomics of Malignant Mesothelioma and New Candidate Biomarkers Thioredoxin and Superoxide Dismutase 2 for Immunohistochemistry

Authors: Hiratsuka, Takuya, Yoshizawa, Akihiko, Endo, Tatsuya, Yamamoto, Takushi, Toyokuni, Shinya, Tsuruyama, Tatsuaki

Source: In Laboratory Investigation February 2024 104(2)

Simultaneous activation of Kras–Akt and Notch pathways induces extrahepatic biliary cancer via the mTORC1 pathway

Authors: Namikawa, Mio, Fukuda, Akihisa, Mizukoshi, Kenta, Iwane, Kosuke, Kawai, Munenori, Yamakawa, Go, Omatsu, Mayuki, Sono, Makoto, Masuda, Tomonori, Araki, Osamu, Nagao, Munemasa, Yoshikawa, Takaaki, Ogawa, Satoshi, Hiramatsu, Yukiko, Muta, Yu, Tsuda, Motoyuki, Maruno, Takahisa, Nakanishi, Yuki, Tsuruyama, Tatsuaki, Taura, Kojiro, Hatano, Etsuro, Seno, Hiroshi

Source: Journal of pathology. 260(4):478-492

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187530412.0x000001&indx=1&recIds=ETOCvdc_100187530412.0x000001

Improving Public Trust in Biobanking: Roundtable Discussions from the 2021 ISBER Annual Meeting

Authors: Yadav, Birendra Kumar, Ng, Wayne, Vu, Hanh, Fachiroh, Jajah, Tsuruyama, Tatsuaki, Zhou, Li, Henderson, Marianne K., Gokhale, Sharvari, Furuta, Koh

Source: Biopreservation and biobanking. 21(3):308-312

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100185654223.0x000001&indx=1&recIds=ETOCvdc_100185654223.0x000001

Clinically relevant model of oxaliplatin‐induced sinusoidal obstruction syndrome

Authors: Toda, Rei, Seo, Satoru, Uemoto, Yusuke, Morino, Koshiro, Nishino, Hiroto, Nakamura, Naohiko, Okuno, Masayuki, Iguchi, Kohta, Sato, Motohiko, Nakamura, Kojiro, Taura, Kojiro, Nakagawa, Shunsaku, Nakagawa, Takayuki, Tsuruyama, Tatsuaki, Manabe, Toshiaki, Kawaguchi, Hiroaki, Iwaisako, Keiko, Ikegawa, Masaya, Uemoto, Shinji, Hatano, Etsuro

Source: Hepatology research. 53(2):145-159

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174769733.0x000001&indx=1&recIds=ETOCvdc_100174769733.0x000001

Harnessing Information Thermodynamics: Conversion of DNA Information into Mechanical Work in RNA Transcription and Nanopore Sequencing.

Authors: Tsuruyama, Tatsuaki^1,2,3,4 (AUTHOR) tsuruyam@ddm.med.kyoto-u.ac.jp

Source: Entropy. Apr2024, Vol. 26 Issue 4, p324. 13p.

Subject Terms: *MOLECULAR motor proteins, *DNA, *FOKKER-Planck equation, *THERMODYNAMICS, *RNA, *DIFFUSION coefficients

Effect of radiation exposure on survival after first solid cancer diagnosis in A-bomb survivors

Authors: Sposto, Richard, Sugiyama, Hiromi, Tsuruyama, Tatsuaki, Brenner, Alina V.

Source: In Cancer Epidemiology April 2023 83

Neutrophil S100A9 supports M2 macrophage niche formation in granulomas

Authors: Mizutani, Tatsuaki ^{1, 2, 8, ∗}, Ano, Toshiaki ^{1, 2}, Yoshioka, Yuya ^{1, 2}, Mizuta, Satoshi ³, Takemoto, Keiko ⁴, Ouchi, Yuki ^{1, 2}, Morita, Daisuke ^{1, 2}, Kitano, Satsuki ⁵, Miyachi, Hitoshi ⁵, Tsuruyama, Tatsuaki ⁶, Fujiwara, Nagatoshi ⁷, Sugita, Masahiko ^{1, 2}

Source: In iScience 17 March 2023 26(3)

Pattern formation of skin cancers: Effects of cancer proliferation and hydrodynamic interactions

Authors: Hoshino, Takuma, Liu, Ming-Wei, Wu, Kuo-An, Chen, Hsuan-Yi, Tsuruyama, Tatsuaki, Komura, Shigeyuki

Source: Phys. Rev. E 99, 032416 (2019)

Subject Terms: Condensed Matter - Soft Condensed Matter

Access URL: http://arxiv.org/abs/1809.04841

Decarbonization in Biobanking: A Potential New Scientific Area

Authors: Shirakashi, Ryo, Kozlakidis, Zisis, Yadav, Birendra Kumar, Ng, Wayne, Fachiroh, Jajah, Vu, Hanh, Tsuruyama, Tatsuaki, Furuta, Koh

Source: Biopreservation and biobanking. 20(5):446-450

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100163264322.0x000001&indx=1&recIds=ETOCvdc_100163264322.0x000001

Bile Duct Regeneration with an Artificial Bile Duct Made of Gelatin Hydrogel Nonwoven Fabrics

Authors: Uemoto, Yusuke, Taura, Kojiro, Nakamura, Daichi, Xuefeng, Li, Nam, Nguyen Hai, Kimura, Yusuke, Yoshino, Kenji, Fuji, Hiroaki, Yoh, Tomoaki, Nishio, Takahiro, Yamamoto, Gen, Koyama, Yukinori, Seo, Satoru, Tsuruyama, Tatsuaki, Iwaisako, Keiko, Uemoto, Shinji, Tabata, Yasuhiko, Hatano, Etsuro

Source: Tissue engineering.Part A. 28(17/18):737-748

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100160319487.0x000001&indx=1&recIds=ETOCvdc_100160319487.0x000001

Preparation of the 'Lexique' for ISBER Best Practices 4th Edition for Biobankers in Indo-Pacific Rim Region

Authors: Yadav, Birendra Kumar, Vu, Hanh, Fachiroh, Jajah, Tsuruyama, Tatsuaki, Ng, Wayne, Furuta, Koh

Source: Biopreservation and biobanking. 20(3):260-270

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100152869672.0x000001&indx=1&recIds=ETOCvdc_100152869672.0x000001

Effect of Impaired T Cell Receptor Signaling on the Gut Microbiota in a Mouse Model of Systemic Autoimmunity

Authors: Shirakashi, Mirei, Maruya, Mikako, Hirota, Keiji, Tsuruyama, Tatsuaki, Matsuo, Takashi, Watanabe, Ryu, Murata, Koichi, Tanaka, Masao, Ito, Hiromu, Yoshifuji, Hajime, Ohmura, Koichiro, Elewaut, Dirk, Sakaguchi, Shimon, Fagarasan, Sidonia, Mimori, Tsuneyo, Hashimoto, Motomu

Source: Arthritis & rheumatology. 74(4):641-653

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100151810400.0x000001&indx=1&recIds=ETOCvdc_100151810400.0x000001

Loss of Arid1a and Pten in Pancreatic Ductal Cells Induces Intraductal Tubulopapillary Neoplasm via the YAP/TAZ Pathway

Authors: Fukunaga, Yuichi, Fukuda, Akihisa, Omatsu, Mayuki, Namikawa, Mio, Sono, Makoto, Masuda, Tomonori, Araki, Osamu, Nagao, Munemasa, Yoshikawa, Takaaki, Ogawa, Satoshi, Hiramatsu, Yukiko, Muta, Yu, Tsuda, Motoyuki, Maruno, Takahisa, Nakanishi, Yuki, Ferrer, Jorge, Tsuruyama, Tatsuaki, Masui, Toshihiko, Hatano, Etsuro, Seno, Hiroshi

Source: In Gastroenterology August 2022 163(2):466-480

DNA insertion mutations can be predicted by a periodic probability function

Authors: Tsuruyama, Tatsuaki

Subject Terms: Physics - Biological Physics, Quantitative Biology - Genomics

Access URL: http://arxiv.org/abs/1707.00159

Quantifying the information transduction of biochemical reaction cascades: transcription of mRNA from ligand stimulation

Authors: Tsuruyama, Tatsuaki

Subject Terms: Quantitative Biology - Molecular Networks

Access URL: http://arxiv.org/abs/1701.01511