ARID1A-BAF coordinates ZIC2 genomic occupancy for epithelial-to-mesenchymal transition in cranial neural crest specification

Authors: Barnada, Samantha M., Giner de Gracia, Aida, Morenilla-Palao, Cruz, López-Cascales, Maria Teresa, Scopa, Chiara, Waltrich, Francis J., Jr., Mikkers, Harald M.M., Cicardi, Maria Elena, Karlin, Jonathan, Trotti, Davide, Peterson, Kevin A., Brugmann, Samantha A., Santen, Gijs W.E., McMahon, Steven B., Herrera, Eloísa, Trizzino, Marco

Source: In The American Journal of Human Genetics 3 October 2024 111(10):2232-2252

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Genetic and Epigenetic Fine Mapping of Complex Trait Associated Loci in the Human Liver

Authors: Çalışkan, Minal, Manduchi, Elisabetta, Rao, H. Shanker, Segert, Julian A., Beltrame, Marcia Holsbach, Trizzino, Marco, Park, YoSon, Baker, Samuel W., Chesi, Alessandra, Johnson, Matthew E., Hodge, Kenyaita M., Leonard, Michelle E., Loza, Baoli, Xin, Dong, Berrido, Andrea M., Hand, Nicholas J., Bauer, Robert C., Wells, Andrew D., Olthoff, Kim M., Shaked, Abraham, Rader, Daniel J., Grant, Struan F.A., Brown, Christopher D.

Source: In The American Journal of Human Genetics 3 July 2019 105(1):89-107

Molecular phylogeny and host‐plant use (Lamiaceae) of the Thymogethes pollen beetles (Coleoptera)

Authors: Sabatelli, Simone, Liu, Meike, Badano, Davide, Mancini, Emiliano, Trizzino, Marco, Richard Cline, Andrew, Endrestøl, Anders, Huang, Min, Audisio, Paolo

Source: Zoologica scripta. 49(1):28-46

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100095467614.0x000001&indx=1&recIds=ETOCvdc_100095467614.0x000001

Targeted Enhancer Activation by a Subunit of the Integrator Complex

Authors: Barbieri, Elisa, Trizzino, Marco, Welsh, Sarah Ann, Owens, Tori Alexandra, Calabretta, Bruno, Carroll, Martin, Sarma, Kavitha, Gardini, Alessandro

Source: In Molecular Cell 5 July 2018 71(1):103-116

The Tumor Suppressor ARID1A Controls Global Transcription via Pausing of RNA Polymerase II

Authors: Trizzino, Marco, Barbieri, Elisa, Petracovici, Ana, Wu, Shuai, Welsh, Sarah A., Owens, Tori A., Licciulli, Silvia, Zhang, Rugang, Gardini, Alessandro

Source: In Cell Reports 26 June 2018 23(13):3933-3945

Transposable elements generate regulatory novelty in a tissue-specific fashion

Authors: Trizzino, Marco, Kapusta, Aurélie, Brown, Christopher

Source: BMC genomics. 19(1):1-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165706030.0x000001&indx=1&recIds=ETOCvdc_100165706030.0x000001

Uncovering Active Bacterial Symbionts in Three Species of Pollen-feeding Beetles (Nitidulidae: Meligethinae).

Authors: Mancini, Emiliano¹, emiliano.mancini@uniroma1.it, Sabatelli, Simone¹, Hu, Yi^2,3, Frasca, Sara¹, Di Giulio, Andrea⁴, Audisio, Paolo¹, Brown, Christopher D.⁵, Russell, Jacob A.², Trizzino, Marco⁶

Source: Microbial Ecology; Jan2023, Vol. 85 Issue 1, p335-339, 5p

Positive Selection and Enhancer Evolution Shaped Lifespan and Body Mass in Great Apes

Authors: Tejada-Martinez, Daniela, Avelar, Roberto A, Lopes, Inês, Zhang, Bruce, Novoa, Guy, de Magalhães, João Pedro, Trizzino, Marco

Source: Molecular biology and evolution. 39(2)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164057973.0x000001&indx=1&recIds=ETOCvdc_100164057973.0x000001

Transposable elements are the primary source of novelty in primate gene regulation

Authors: Trizzino, Marco, Park, YoSon, Holsbach-Beltrame, Marcia, Aracena, Katherine, Mika, Katelyn, Caliskan, Minal, Perry, George H., Lynch, Vincent J., Brown, Christopher D.

Source: Genome research. 27(10):1623-1633

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN613171300&indx=1&recIds=ETOCRN613171300

Unraveling cryptic species diversity in an aposematic sap beetle genus (Coleoptera: Nitidulidae: Cryptarchinae) from northern Europe

Authors: Clayhills, Tom, Audisio, Paolo, Cline, Andrew R., Mancini, Emiliano, Trizzino, Marco, Sabatelli, Simone

Source: Insect systematics & evolution. 47(2):131-148

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN606249029&indx=1&recIds=ETOCRN606249029

JUN upregulation drives aberrant transposable element mobilization, associated innate immune response, and impaired neurogenesis in Alzheimer’s disease.

Authors: Scopa, Chiara, Barnada, Samantha M., Cicardi, Maria E., Singer, Mo, Trotti, Davide, Trizzino, Marco

Source: Nature Communications; 12/4/2023, Vol. 14 Issue 1, p1-16, 16p

Genomic features underlie the co-option of SVA transposons as cis-regulatory elements in human pluripotent stem cells.

Authors: Barnada, Samantha M.^1,2, Isopi, Andrew^3,4, Tejada-Martinez, Daniela¹, Goubert, Clément⁵, Patoori, Sruti¹, Pagliaroli, Luca¹, Tracewell, Mason^1,4, Trizzino, Marco¹, marco.trizzino83@gmail.com

Source: PLoS Genetics; 6/15/2022, Vol. 18 Issue 6, p1-19, 19p

Molecular phylogeny and diversification of the “Haenydra” lineage (Hydraenidae, genus Hydraena), a north-Mediterranean endemic-rich group of rheophilic Coleoptera

Authors: Trizzino, Marco, Audisio, Paolo A., Antonini, Gloria, Mancini, Emiliano, Ribera, Ignacio

Source: In Molecular Phylogenetics and Evolution December 2011 61(3):772-783

A peculiar new genus and species of pollen-beetle (Coleoptera, Nitidulidae) from eastern Africa, with a molecular phylogeny of related Meligethinae

Authors: Audisio, Paolo, Cline, Andrew R., Solano, Emanuela, Mancini, Emiliano, Lamanna, Francesco, Antonini, Gloria, Trizzino, Marco

Source: Systematics and biodiversity. 12(1):77-91

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100033135384.0x000001&indx=1&recIds=ETOCvdc_100033135384.0x000001

Comparative analysis of sequences and secondary structures of the rRNA internal transcribed spacer 2 (ITS2) in pollen beetles of the subfamily Meligethinae (Coleoptera, Nitidulidae): Potential use of slippage-derived sequences in molecular systematics

Authors: Trizzino, Marco, Audisio, Paolo, Antonini, Gloria, De Biase, Alessio, Mancini, Emiliano

Source: In Molecular Phylogenetics and Evolution 2009 51(2):215-226

SWI/SNF catalytic subunits' switch drives resistance to EZH2 inhibitors in ARID1A-mutated cells

Authors: Wu, Shuai, Fatkhutdinov, Nail, Fukumoto, Takeshi, Bitler, Benjamin G., Park, Pyoung Hwa, Kossenkov, Andrew V., Trizzino, Marco, Tang, Hsin-Yao, Zhang, Lin, Gardini, Alessandro, Speicher, David W., Zhang, Rugang

Source: Nature communications. 9(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129877516.0x000001&indx=1&recIds=ETOCvdc_100129877516.0x000001

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Young transposable elements rewired gene regulatory networks in human and chimpanzee hippocampal intermediate progenitors.

Authors: Patoori, Sruti, Barnada, Samantha M., Large, Christopher, Murray, John I., Trizzino, Marco

Source: Development (09501991); Oct2022, Vol. 149 Issue 19, p1-16, 16p

Subject Terms: GENE regulatory networks, PLURIPOTENT stem cells, CHIMPANZEES, HIPPOCAMPUS (Brain), ENDOGENOUS retroviruses, PROGENITOR cells

Positive Selection and Enhancer Evolution Shaped Lifespan and Body Mass in Great Apes.

Authors: Tejada-Martinez, Daniela, Avelar, Roberto A, Lopes, Inês, Zhang, Bruce, Novoa, Guy, Magalhães, João Pedro de, Trizzino, Marco

Source: Molecular Biology & Evolution; Feb2022, Vol. 39 Issue 2, p1-16, 16p

Subject Terms: PRIMATES, AGING, CANCER, APES, TRANSPOSONS, CELLULAR aging