Comparison of Bayesian approaches for developing prediction models in rare disease: application to the identification of patients with Maturity-Onset Diabetes of the Young

Authors: Pedro Cardoso, Timothy J. McDonald, Kashyap A. Patel, Ewan R. Pearson, Andrew T. Hattersley, Beverley M. Shields, Trevelyan J. McKinley

Source: BMC Medical Research Methodology, Vol 24, Iss 1, Pp 1-17 (2024)

Subject Terms: MODY, Bayesian modelling, Rare diseases, Prior elicitation, Recalibration, Medicine (General), R5-920

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2288

Access URL: https://doaj.org/article/c97bb83cbf934f38bba047a2417f6b8e

Dirichlet process mixture models to impute missing predictor data in counterfactual prediction models: an application to predict optimal type 2 diabetes therapy

Authors: Pedro Cardoso, John M. Dennis, Jack Bowden, Beverley M. Shields, Trevelyan J. McKinley, the MASTERMIND Consortium

Source: BMC Medical Informatics and Decision Making, Vol 24, Iss 1, Pp 1-15 (2024)

Subject Terms: Dirichlet process mixture model, Treatment selection model, Precision medicine, Type 2 diabetes, Bayesian modelling, Computer applications to medicine. Medical informatics, R858-859.7

File Description: electronic resource

Relation: https://doaj.org/toc/1472-6947

Access URL: https://doaj.org/article/59677f68d0864b828a85104ca3ec2e23

Importance sampling and Bayesian model comparison in ecology and evolution

Authors: Dave W. Hudson, Dave J. Hodgson, Michael A. Cant, Faye J. Thompson, Richard Delahay, Robbie A. McDonald, Trevelyan J. McKinley

Source: Methods in Ecology and Evolution, Vol 14, Iss 12, Pp 2994-3006 (2023)

Subject Terms: Bayesian, importance sampling, marginal‐likelihood estimation, model‐comparison, multimodel inference, survival analysis, Ecology, QH540-549.5, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2041-210X

Access URL: https://doaj.org/article/e77a6d767d16451e825c0fa36e82567c

Emulation and History Matching Using the hmer Package

Authors: Andrew Iskauskas, Ian Vernon, Michael Goldstein, Danny Scarponi, Nicky McCreesh, Trevelyan J. McKinley, Richard G. White

Source: Journal of Statistical Software, Vol 109, Iss 1 (2024)

Subject Terms: Statistics, HA1-4737

File Description: electronic resource

Relation: https://www.jstatsoft.org/index.php/jss/article/view/4848; https://doaj.org/toc/1548-7660

Access URL: https://doaj.org/article/aa23d1c2d16e43859aed752b8d6cd03e

Body mass index and inflammation in depression and treatment-resistant depression: a Mendelian randomisation study

Authors: Vasilios Karageorgiou, Francesco Casanova, Jessica O’Loughlin, Harry Green, Trevelyan J. McKinley, Jack Bowden, Jessica Tyrrell

Source: BMC Medicine, Vol 21, Iss 1, Pp 1-14 (2023)

Subject Terms: Mendelian randomisation, Body mass index, Depression, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7015

Access URL: https://doaj.org/article/5e7a8ef675dc47db8ae585a417067248

Demonstrating multi-country calibration of a tuberculosis model using new history matching and emulation package - hmer

Authors: Danny Scarponi, Andrew Iskauskas, Rebecca A. Clark, Ian Vernon, Trevelyan J. McKinley, Michael Goldstein, Christinah Mukandavire, Arminder Deol, Chathika Weerasuriya, Roel Bakker, Richard G. White, Nicky McCreesh

Source: Epidemics, Vol 43, Iss , Pp 100678- (2023)

Subject Terms: Tuberculosis, Vaccines, Mathematical modelling, Model calibration, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1755436523000142; https://doaj.org/toc/1755-4365

Access URL: https://doaj.org/article/28468e9bcb1d4264919f4f3f0b2be757

Characterization of potential superspreader farms for bovine tuberculosis: A review

Authors: Helen R. Fielding, Trevelyan J. McKinley, Richard J. Delahay, Matthew J. Silk, Robbie A. McDonald

Source: Veterinary Medicine and Science, Vol 7, Iss 2, Pp 310-321 (2021)

Subject Terms: bovine tuberculosis, cattle, heterogeneity, livestock movements, superspreader, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: https://doaj.org/toc/2053-1095

Access URL: https://doaj.org/article/8600b300066a4f62ba23c350fcb5d1a1

Missing Data in Sea Turtle Population Monitoring: A Bayesian Statistical Framework Accounting for Incomplete Sampling

Authors: Lucy C. M. Omeyer, Trevelyan J. McKinley, Nathalie Bréheret, Gaëlle Bal, George Petchell Balchin, Abdon Bitsindou, Eva Chauvet, Tim Collins, Bryan K. Curran, Angela Formia, Alexandre Girard, Marc Girondot, Brendan J. Godley, Jean-Gabriel Mavoungou, Laurène Poli, Dominic Tilley, Hilde VanLeeuwe, Kristian Metcalfe

Source: Frontiers in Marine Science, Vol 9 (2022)

Subject Terms: Africa, leatherback turtle, sea turtles, olive ridley turtle, Bayesian hierarchical modelling, population status, Science, General. Including nature conservation, geographical distribution, QH1-199.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmars.2022.817014/full; https://doaj.org/toc/2296-7745

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Challenges in estimation, uncertainty quantification and elicitation for pandemic modelling

Authors: Ben Swallow, Paul Birrell, Joshua Blake, Mark Burgman, Peter Challenor, Luc E. Coffeng, Philip Dawid, Daniela De Angelis, Michael Goldstein, Victoria Hemming, Glenn Marion, Trevelyan J. McKinley, Christopher E. Overton, Jasmina Panovska-Griffiths, Lorenzo Pellis, Will Probert, Katriona Shea, Daniel Villela, Ian Vernon

Source: Epidemics, Vol 38, Iss , Pp 100547- (2022)

Subject Terms: Statistical estimation, Uncertainty quantification, Expert elicitation, Pandemic modelling, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1755436522000093; https://doaj.org/toc/1755-4365

Access URL: https://doaj.org/article/50579380231b42d78a4ae894b16a42e2

Estimating cetacean population trends from static acoustic monitoring data using Paired Year Ratio Assessment (PYRA)

Authors: Eric P. M. Grist, Trevelyan J. McKinley, Saptarshi Das, Tom Tregenza, Aileen Jeffries, Nicholas Tregenza

Source: PLoS ONE, Vol 17, Iss 3 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8929582/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/02ec0b75c4834de380beb880f7cd6834

Effects of trading networks on the risk of bovine tuberculosis incidents on cattle farms in Great Britain

Authors: Helen R. Fielding, Trevelyan J. McKinley, Richard J. Delahay, Matthew J. Silk, Robbie A. McDonald

Source: Royal Society Open Science, Vol 7, Iss 4 (2020)

Subject Terms: livestock movements, cattle, disease, contact chains, mycobacterium bovis, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2054-5703

Access URL: https://doaj.org/article/335acb8c8206484d88dd02b6b1433b56

Improving ART programme retention and viral suppression are key to maximising impact of treatment as prevention – a modelling study

Authors: Nicky McCreesh, Ioannis Andrianakis, Rebecca N. Nsubuga, Mark Strong, Ian Vernon, Trevelyan J. McKinley, Jeremy E. Oakley, Michael Goldstein, Richard Hayes, Richard G. White

Source: BMC Infectious Diseases, Vol 17, Iss 1, Pp 1-8 (2017)

Subject Terms: HIV, ART, Uganda, Transmission, Sub-Saharan Africa, Retention, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12879-017-2664-6; https://doaj.org/toc/1471-2334

Access URL: https://doaj.org/article/a00b142d3f1c4efd80f9ca4adce0ef31

Universal test, treat, and keep: improving ART retention is key in cost-effective HIV control in Uganda

Authors: Nicky McCreesh, Ioannis Andrianakis, Rebecca N. Nsubuga, Mark Strong, Ian Vernon, Trevelyan J. McKinley, Jeremy E. Oakley, Michael Goldstein, Richard Hayes, Richard G. White

Source: BMC Infectious Diseases, Vol 17, Iss 1, Pp 1-11 (2017)

Subject Terms: HIV, ART, Uganda, Mathematical modelling, Universal test and treat, Cost-effectiveness, Infectious and parasitic diseases, RC109-216

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Relation: http://link.springer.com/article/10.1186/s12879-017-2420-y; https://doaj.org/toc/1471-2334

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Contact chains of cattle farms in Great Britain

Authors: Helen R. Fielding, Trevelyan J. McKinley, Matthew J. Silk, Richard J. Delahay, Robbie A. McDonald

Source: Royal Society Open Science, Vol 6, Iss 2 (2019)

Subject Terms: cattle, contact chains, epidemiology, network analysis, superspreader, Science

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Relation: https://doaj.org/toc/2054-5703

Access URL: https://doaj.org/article/35a0d16808824d93a261f2e4fb8583e4

Analysis of Lifetime Mortality Trajectories in Wildlife Disease Research: BaSTA and Beyond

Authors: Dave W. Hudson, Richard Delahay, Robbie A. McDonald, Trevelyan J. McKinley, Dave J. Hodgson

Source: Diversity, Vol 11, Iss 10, p 182 (2019)

Subject Terms: bayesian survival trajectory analysis, survival, mortality, bayesian inference, senescence, population dynamics, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/1424-2818/11/10/182; https://doaj.org/toc/1424-2818

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Efficient modelling of infectious diseases in wildlife: A case study of bovine tuberculosis in wild badgers.

Authors: Evandro Konzen, Richard J Delahay, Dave J Hodgson, Robbie A McDonald, Ellen Brooks Pollock, Simon E F Spencer, Trevelyan J McKinley

Source: PLoS Computational Biology, Vol 20, Iss 11, p e1012592 (2024)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/09533c613445419b8dfbd2bf51988d3e

Estimating cetacean population trends from static acoustic monitoring data using Paired Year Ratio Assessment (PYRA).

Authors: Eric P M Grist, Trevelyan J McKinley, Saptarshi Das, Tom Tregenza, Aileen Jeffries, Nicholas Tregenza

Source: PLoS ONE, Vol 17, Iss 3, p e0264289 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/7f5e5f7e4ba1499ba41b1a2a08b21266

Risk factors and variations in detection of new bovine tuberculosis breakdowns via slaughterhouse surveillance in Great Britain.

Authors: Trevelyan J McKinley, Debby Lipschutz-Powell, Andrew P Mitchell, James L N Wood, Andrew J K Conlan

Source: PLoS ONE, Vol 13, Iss 6, p e0198760 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://storage.googleapis.com/plos-corpus-prod/10.1371/journal.pone.0198760/1/pone.0198760.pdf?X-Goog-Algorithm=GOOG4-RSA-SHA256&X-Goog-Credential=wombat-sa%40plos-prod.iam.gserviceaccount.com%2F20210221%2Fauto%2Fstorage%2Fgoog4_request&X-Goog-Date=20210221T180910Z&X-Goog-Expires=3600&X-Goog-SignedHeaders=host&X-Goog-Signature=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; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f5ab854251764f39ba1ef22b678d5754

Choice of time horizon critical in estimating costs and effects of changes to HIV programmes.

Authors: Nicky McCreesh, Ioannis Andrianakis, Rebecca N Nsubuga, Mark Strong, Ian Vernon, Trevelyan J McKinley, Jeremy E Oakley, Michael Goldstein, Richard Hayes, Richard G White

Source: PLoS ONE, Vol 13, Iss 5, p e0196480 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5955498?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/5ccdb6bc3a6a4e33a8439ccce26186fb

Potential benefits of cattle vaccination as a supplementary control for bovine tuberculosis.

Authors: Andrew J K Conlan, Ellen Brooks Pollock, Trevelyan J McKinley, Andrew P Mitchell, Gareth J Jones, Martin Vordermeier, James L N Wood

Source: PLoS Computational Biology, Vol 11, Iss 2, p e1004038 (2015)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004038&type=printable; https://doaj.org/toc/1553-734X; https://doaj.org/toc/1553-7358

Access URL: https://doaj.org/article/ce3f94186c2148e9bce308ee9255dc17