Genetic analysis of tomato brown rugose fruit virus reveals evolutionary adaptation and codon usage bias patterns

Authors: Abozar Ghorbani

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-17 (2024)

Subject Terms: Tomato brown rugose fruit virus, Codon usage bias, Selection pressures, Evolutionary dynamics, Molecular adaptation, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/c01bfafa454244a7b551213f4e4c85b3

Deciphering resistance to Tomato brown rugose fruit virus (ToBRFV) using Genome-Wide Association Studies

Authors: Topcu, Yasin ^{a, ⁎}, Yildiz, Kubra ^a, Kayikci, Halim Can ^a, Aydin, Serkan ^a, Feng, Qian ^b, Sapkota, Manoj ^c

Source: In Scientia Horticulturae 1 February 2025 341

Profiling of small RNAs derived from tomato brown rugose fruit virus in infected Solanum lycopersicum plants by deep sequencing

Authors: Mangle Chen, Donghai Wang, Jiali Yang, Yuhao Cao, Xuemei Song, Yuwen Lu, Hongying Zheng, Jiejun Peng, Guanwei Wu, Jian Wu, Junmin Li, Jianping Chen, Fei Yan, Shaofei Rao

Source: Frontiers in Microbiology, Vol 15 (2025)

Subject Terms: tomato brown rugose fruit virus, RNA silencing, virus-derived small interfering RNA, high-throughput sequencing, tomato, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1504861/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/ce7449e4b06640d28c94855b1e445cc1

Comprehensive Sampling and Detection Strategies for the Field Surveillance of Tomato Brown Rugose Fruit Virus

Authors: Xinru Zhao, Yanan Xu, Xinyi Xu, Hui Zhou, Juan Shi, Changkai Yang, Xueping Zhou, Xiuling Yang

Source: Agronomy, Vol 15, Iss 2, p 318 (2025)

Subject Terms: tomato brown rugose fruit virus, sampling, virus detection, Agriculture

File Description: electronic resource

Relation: https://www.mdpi.com/2073-4395/15/2/318; https://doaj.org/toc/2073-4395

Access URL: https://doaj.org/article/2e90d7ae3fc44850972e894604b0843b

Single amino acid change in tomato brown rugose fruit virus breaks virus-specific resistance in new resistant tomato cultivar

Authors: Zafeiro Zisi, Lucas Ghijselings, Elise Vogel, Christine Vos, Jelle Matthijnssens

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: tomato brown rugose fruit virus, tomato, cultivar, resistance breaking, resistance, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1382862/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/7a75343ac9074bb6b9e1fa503a9ed8a0

The Commercial Validation of Three Tomato Brown Rugose Fruit Virus Assays

Authors: Alex Eads, Deborah Groth-Helms, Bryant Davenport, Xian Cha, Rugang Li, Coilin Walsh, Keith Schuetz

Source: PhytoFrontiers, Vol 3, Iss 1, Pp 206-213 (2023)

Subject Terms: AmplifyRP, ELISA, ImmunoStrip, isothermal, ToBRFV, Tomato brown rugose fruit virus, Plant culture, SB1-1110, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/2690-5442

Access URL: https://doaj.org/article/8a4838d4449e4e1fafc99d8f5aacd840

Tomato Brown Rugose Fruit Virus Is Transmissible through a Greenhouse Hydroponic System but May Be Inactivated by Cold Plasma Ozone Treatment

Authors: Jing Zhou, Andrea Gilliard, Kai-Shu Ling

Source: Horticulturae, Vol 10, Iss 4, p 416 (2024)

Subject Terms: tomato brown rugose fruit virus, hydroponic, water transmission, cold plasma ozone, disinfection, water treatment, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.mdpi.com/2311-7524/10/4/416; https://doaj.org/toc/2311-7524

Access URL: https://doaj.org/article/18ae33c60e8347c589a0852ab3060ac8

A Novel Tiled Amplicon Sequencing Assay Targeting the Tomato Brown Rugose Fruit Virus (ToBRFV) Genome Reveals Widespread Distribution in Municipal Wastewater Treatment Systems in the Province of Ontario, Canada

Authors: Delaney Nash, Isaac Ellmen, Jennifer J. Knapp, Ria Menon, Alyssa K. Overton, Jiujun Cheng, Michael D. J. Lynch, Jozef I. Nissimov, Trevor C. Charles

Source: Viruses, Vol 16, Iss 3, p 460 (2024)

Subject Terms: Tomato Brown Rugose Fruit Virus (ToBRFV), ARTIC amplicon sequencing, lineage abundance estimation, wastewater, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/16/3/460; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/d3e9ecdaae984f71842a2c9ff574665f

Evaluation of Tomato Germplasm against Tomato Brown Rugose Fruit Virus and Identification of Resistance in Solanum pimpinellifolium

Authors: Namrata Jaiswal, Bidisha Chanda, Andrea Gilliard, Ainong Shi, Kai-Shu Ling

Source: Plants, Vol 13, Iss 5, p 581 (2024)

Subject Terms: tobamoviruses, tomato brown rugose fruit virus (ToBRFV), genetic resistance, tomato, Solanum lycopersicum, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/13/5/581; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/ed8cdabc64f744be8818472992e4a257

Tomato brown rugose fruit virus in aqueous environments – survival and significance of water-mediated transmission

Authors: Nataša Mehle, Katarina Bačnik, Irena Bajde, Jakob Brodarič, Adrian Fox, Ion Gutiérrez-Aguirre, Miha Kitek, Denis Kutnjak, Yue Lin Loh, Olivera Maksimović Carvalho Ferreira, Maja Ravnikar, Elise Vogel, Christine Vos, Ana Vučurović

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: tomato brown rugose fruit virus, water-linked epidemiology, survival, tomato, hydroponics, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1187920/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/3732ee4b59eb40579accd359776f346e

Tomato Brown Rugose Fruit Virus: Survival and Disinfection Efficacy on Common Glasshouse Surfaces

Authors: Anna Skelton, Leanne Frew, Richard Ward, Rachel Hodgson, Stephen Forde, Sam McDonough, Gemma Webster, Kiera Chisnall, Mary Mynett, Adam Buxton-Kirk, Aimee R. Fowkes, Rebecca Weekes, Adrian Fox

Source: Viruses, Vol 15, Iss 10, p 2076 (2023)

Subject Terms: tomato brown rugose fruit virus, ToBRFV, disinfection, survival, thermal inactivation, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/15/10/2076; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/b5c4df658a02491fb5c0d5bee7d559d3

Molecular characterization and pathogenicity of an infectious cDNA clone of tomato brown rugose fruit virus

Authors: Ziyue Ma, Hui Zhang, Ming Ding, Zhongkai Zhang, Xiuling Yang, Xueping Zhou

Source: Phytopathology Research, Vol 3, Iss 1, Pp 1-10 (2021)

Subject Terms: Tobamovirus, Tomato brown rugose fruit virus, Infectious clone, Agroinoculation, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/2524-4167

Access URL: https://doaj.org/article/23f4915b67ae4ea899f9b6c7586521e8

Evaluation of tomato brown rugose fruit virus as a microbial source tracking marker for human sewage in Thailand

Authors: Paisantham, Phongsawat ^a, Theplhar, Supitchaya ^a, Srathongneam, Thitima ^a, Sresung, Montakarn ^a, Mongkolsuk, Skorn ^{a, b}, Sirikanchana, Kwanrawee ^{a, b, ⁎}

Source: In Science of the Total Environment 1 February 2025 963

Nanopore Technology Applied to Targeted Detection of Tomato Brown Rugose Fruit Virus Allows Sequencing of Related Viruses and the Diagnosis of Mixed Infections

Authors: Raied Abou Kubaa, Serafina Serena Amoia, Giuseppe Altamura, Angelantonio Minafra, Michela Chiumenti, Fabrizio Cillo

Source: Plants, Vol 12, Iss 5, p 999 (2023)

Subject Terms: high-throughput sequencing (HTS), nanopore sequencing, tomato brown rugose fruit virus (ToBRFV), tomato mottle mosaic virus (ToMMV), pepino mosaic virus (PepMV), Tobamovirus, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/12/5/999; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/a6b7cb516f104b44806f69345e31824c

Rapid and Sensitive Detection of Tomato Brown Rugose Fruit Virus in Tomato and Pepper Seeds by Reverse Transcription Loop-Mediated Isothermal Amplification Assays (Real Time and Visual) and Comparison With RT-PCR End-Point and RT-qPCR Methods

Authors: Domenico Rizzo, Daniele Da Lio, Alessandra Panattoni, Chiara Salemi, Giovanni Cappellini, Linda Bartolini, Giuseppe Parrella

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: virus diagnostic, seeds contamination, seed testing, tomato brown rugose fruit virus, RT-LAMP assay, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.640932/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/57880e04bc5540f6a0ad8f455494f0bd

Identification of Tomato Infecting Viruses That Co-Isolate with Nanovesicles Using a Combined Proteomics and Electron-Microscopic Approach

Authors: Ramila Mammadova, Immacolata Fiume, Ramesh Bokka, Veronika Kralj-Iglič, Darja Božič, Matic Kisovec, Marjetka Podobnik, Apolonija Bedina Zavec, Matej Hočevar, Gabriella Gellén, Gitta Schlosser, Gabriella Pocsfalvi

Source: Nanomaterials, Vol 11, Iss 8, p 1922 (2021)

Subject Terms: tomato, plant viruses, tomato brown rugose fruit virus, tomato mosaic virus, tomato spotted wilt virus, extracellular vesicles, Chemistry, QD1-999

File Description: electronic resource

Relation: https://www.mdpi.com/2079-4991/11/8/1922; https://doaj.org/toc/2079-4991

Access URL: https://doaj.org/article/1c940e190cc6442ab7f203a0b2e7545e

Differential Detection of the Tobamoviruses Tomato Mosaic Virus (ToMV) and Tomato Brown Rugose Fruit Virus (ToBRFV) Using CRISPR-Cas12a

Authors: Dan Mark Alon, Hagit Hak, Menachem Bornstein, Gur Pines, Ziv Spiegelman

Source: Plants, Vol 10, Iss 6, p 1256 (2021)

Subject Terms: CRISPR/Cas12a, Solanum lycopersicum, Tobamovirus, ToBRFV, tomato brown rugose fruit virus, tomato mosaic virus, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/10/6/1256; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/1ec8c0419ef541a0bd232a0cbdd87d16

The Potential Risk of Plant-Virus Disease Initiation by Infected Tomatoes

Authors: Chen Klap, Neta Luria, Elisheva Smith, Elena Bakelman, Eduard Belausov, Orly Laskar, Oded Lachman, Amit Gal-On, Aviv Dombrovsky

Source: Plants, Vol 9, Iss 5, p 623 (2020)

Subject Terms: primary viral inoculum, mechanical transmission, tomato brown rugose fruit virus, pepino mosaic virus, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/9/5/623; https://doaj.org/toc/2223-7747

Access URL: https://doaj.org/article/babda8dd4f0a44a49837183215f93e39

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