Detection of Peri-Pancreatic Edema using Deep Learning and Radiomics Techniques

Authors: Hong, Ziliang, Jha, Debesh, Biswas, Koushik, Zhang, Zheyuan, Velichko, Yury, Yazici, Cemal, Tirkes, Temel, Borhani, Amir, Turkbey, Baris, Medetalibeyoglu, Alpay, Durak, Gorkem, Bagci, Ulas

Source: 2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) Engineering in Medicine and Biology Society (EMBC), 2024 46th Annual International Conference of the IEEE. :1-4 Jul, 2024

Relation: 2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

Large-Scale Multi-Center CT and MRI Segmentation of Pancreas with Deep Learning

Authors: Zhang, Zheyuan, Keles, Elif, Durak, Gorkem, Taktak, Yavuz, Susladkar, Onkar, Gorade, Vandan, Jha, Debesh, Ormeci, Asli C., Medetalibeyoglu, Alpay, Yao, Lanhong, Wang, Bin, Isler, Ilkin Sevgi, Peng, Linkai, Pan, Hongyi, Vendrami, Camila Lopes, Bourhani, Amir, Velichko, Yury, Gong, Boqing, Spampinato, Concetto, Pyrros, Ayis, Tiwari, Pallavi, Klatte, Derk C. F., Engels, Megan, Hoogenboom, Sanne, Bolan, Candice W., Agarunov, Emil, Harfouch, Nassier, Huang, Chenchan, Bruno, Marco J., Schoots, Ivo, Keswani, Rajesh N., Miller, Frank H., Gonda, Tamas, Yazici, Cemal, Tirkes, Temel, Turkbey, Baris, Wallace, Michael B., Bagci, Ulas

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2405.12367

Radiomics Boosts Deep Learning Model for IPMN Classification

Authors: Yao, Lanhong, Zhang, Zheyuan, Demir, Ugur, Keles, Elif, Vendrami, Camila, Agarunov, Emil, Bolan, Candice, Schoots, Ivo, Bruno, Marc, Keswani, Rajesh, Miller, Frank, Gonda, Tamas, Yazici, Cemal, Tirkes, Temel, Wallace, Michael, Spampinato, Concetto, Bagci, Ulas

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2309.05857

Large-scale multi-center CT and MRI segmentation of pancreas with deep learning

Authors: Zhang, Zheyuan, Keles, Elif, Durak, Gorkem, Taktak, Yavuz, Susladkar, Onkar, Gorade, Vandan, Jha, Debesh, Ormeci, Asli C., Medetalibeyoglu, Alpay, Yao, Lanhong, Wang, Bin, Isler, Ilkin Sevgi, Peng, Linkai, Pan, Hongyi, Vendrami, Camila Lopes, Bourhani, Amir, Velichko, Yury, Gong, Boqing, Spampinato, Concetto, Pyrros, Ayis, Tiwari, Pallavi, Klatte, Derk C.F., Engels, Megan, Hoogenboom, Sanne, Bolan, Candice W., Agarunov, Emil, Harfouch, Nassier, Huang, Chenchan, Bruno, Marco J., Schoots, Ivo, Keswani, Rajesh N., Miller, Frank H., Gonda, Tamas, Yazici, Cemal, Tirkes, Temel, Turkbey, Baris, Wallace, Michael B., Bagci, Ulas

Source: In Medical Image Analysis January 2025 99

Advances in MRI of Chronic Pancreatitis

Authors: Tirkes, Temel

Source: In Advances in Clinical Radiology September 2024 6(1):31-39

A review of deep learning and radiomics approaches for pancreatic cancer diagnosis from medical imaging

Authors: Yao, Lanhong, Zhang, Zheyuan, Keles, Elif, Yazici, Cemal, Tirkes, Temel, Bagci, Ulas

Source: Current opinion in gastroenterology. 39(5):436-447

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100195930765.0x000001&indx=1&recIds=ETOCvdc_100195930765.0x000001

Integrated Physiology of the Exocrine and Endocrine Compartments in Pancreatic Diseases

Authors: Mastracci, Teresa L., Apte, Minoti, Amundadottir, Laufey T., Alvarsson, Alexandra, Artandi, Steven, Bellin, Melena D., Bernal-Mizrachi, Ernesto, Caicedo, Alejandro, Campbell-Thompson, Martha, Cruz-Monserrate, Zobeida, El Ouaamari, Abdelfattah, Gaulton, Kyle J., Geisz, Andrea, Goodarzi, Mark O., Hara, Manami, Hull-Meichle, Rebecca L., Kleger, Alexander, Klein, Alison P., Kopp, Janel L., Kulkarni, Rohit N., Muzumdar, Mandar D., Naren, Anjaparavanda P., Oakes, Scott A., Olesen, Søren S., Phelps, Edward A., Powers, Alvin C., Stabler, Cherie L., Tirkes, Temel, Whitcomb, David C., Yadav, Dhiraj, Yong, Jing, Zaghloul, Norann A., Sander, Maike, Pandol, Stephen J.

Source: Pancreas. 51(9):1061-1073

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100189932631.0x000001&indx=1&recIds=ETOCvdc_100189932631.0x000001

Design and Rationale for the Use of Magnetic Resonance Imaging Biomarkers to Predict Diabetes After Acute Pancreatitis in the Diabetes RElated to Acute Pancreatitis and Its Mechanisms Study

Authors: Tirkes, Temel, Chinchilli, Vernon M., Bagci, Ulas, Parker, Jason G., Zhao, Xuandong, Dasyam, Anil K., Feranec, Nicholas, Grajo, Joseph R., Shah, Zarine K., Poullos, Peter D., Spilseth, Benjamin, Zaheer, Atif, Xie, Karen L., Wachsman, Ashley M., Campbell-Thompson, Martha, Conwell, Darwin L., Fogel, Evan L., Forsmark, Christopher E., Hart, Phil A., Pandol, Stephen J., Park, Walter G., Pratley, Richard E., Yazici, Cemal, Laughlin, Maren R., Andersen, Dana K., Serrano, Jose, Bellin, Melena D., Yadav, Dhiraj

Source: Pancreas. 51(6):586-592

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100172816741.0x000001&indx=1&recIds=ETOCvdc_100172816741.0x000001

Rationale and Design for the Diabetes RElated to Acute Pancreatitis and Its Mechanisms Study

Authors: Hart, Phil A., Papachristou, Georgios I., Park, Walter G., Dyer, Anne-Marie, Chinchilli, Vernon M., Afghani, Elham, Akshintala, Venkata S., Andersen, Dana K., Buxbaum, James L., Conwell, Darwin L., Dungan, Kathleen M., Easler, Jeffrey J., Fogel, Evan L., Greenbaum, Carla J., Kalyani, Rita R., Korc, Murray, Kozarek, Richard, Laughlin, Maren R., Lee, Peter J., Maranki, Jennifer L., Pandol, Stephen J., Phillips, Anna Evans, Serrano, Jose, Singh, Vikesh K., Speake, Cate, Tirkes, Temel, Toledo, Frederico G.S., Trikudanathan, Guru, Vege, Santhi Swaroop, Wang, Ming, Yazici, Cemal, Zaheer, Atif, Forsmark, Christopher E., Bellin, Melena D., Yadav, Dhiraj

Source: Pancreas. 51(6):568-574

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100172816669.0x000001&indx=1&recIds=ETOCvdc_100172816669.0x000001

Diagnosis and treatment of exocrine pancreatic insufficiency in chronic pancreatitis: An international expert survey and case vignette study

Authors: Falconi, Massimo, Zou, Wen-Bin, Engjom, Trond, Ooi, Chee Y., Sutton, Robert, Frulloni, Luca, Neoptolemos, John, Wilcox, Charles, Miroslav, Vujasinovic, Trikudanathan, Guru, Liao, Zhuan, Hauge, Truls, Mössner, Joachim, Hoge, Chantal, Fockens, Paul, Mieog, Sven, Capurso, Gabriele, Cui, Yunfeng, de Madaria, Enrique, Distler, Marius, Aghdassi, Ali, Whitcomb, David C., Russell, Kylie, Beyer, Georg, Kunovsky, Lumír, Kwanten, Wilhelmus, Nava, Andrea Kazemi, Conlon, Kevin, Siriwardena, A.K., Paiella, Salvatore, Alconchel, Felipe, Marino, Marco Vito, de Meijer, Vincent E., Domingo, Carlos, Kleeff, Jorg, Lakshmanan, Aarti, Lie Chu, Michael Jen, Bouwense, Stefan, Nashidengo, Pueya Rashid, Konstantinos, Perivoliotis, Muttillo, Edoardo Maria, Umar, Garzali Ibrahim, Castro Santiago, Maria Jesus, Lopez-Lopez, Victor, Torri, Francesco, Schmelzle, Moritz, Ignatavicius, Povilas, Wicherts, Dennis, Gomes, Antonio, Machairas, Nikolaos A., Dorovinis, Panagiotis I., Serrablo, Alejandro, Soreide, Kjetil, Rahbari, Mohammad, Jie Chu, Michael Jen, Ptasnuka, Margarita, Petrulionis, Marius, Noel, Colin Byron, Castro, Ernest, Di Martino, Marcello, Recordare, Alfonso, Stättner, Stefan, Ausania, Fabio, Hartman, Vera, Roeyen, Geert, Egorov, Viacheslav, Vanagas, Tomas, Ebrahim, Mohamed, Arabadzhieva, Elena, Malleo, Giuseppe, Li, Liang, Adams, David, Oracz, Grzegorz, Nageshwar, Reddy D., Waldthaler, Alexander, Masamune, Atsushi, Drewes, Asbjorn Mohr, Amodio, Antonio, Tirkes, Temel, Srivastava, Anshu, Beilman, Gregory J., Berger, Zoltan, Lindkvist, Bjorn, Cavestro, Giulia Martina, Gariepy, Cheryl, Czakó, Laszlo, Di Leo, Milena, Sharma, Vishal, Lakhtakia, Sundeep, Rana, Surinder Singh, Duggan, Sinaed N., Kwon, Chang-Il, Phillips, Anna Evans, Forsmark, Christopher E., Gleeson, Ferga C., Lehman, Glen A., Greenhalf, William, Costamagna, Guido, Halloran, Christopher M., Friess, Helmut, Rasmussen, Henrik Hojgaard, Ikeura, Tsukasa, Haldorsen, Ingfrid S., Itoi, Takao, Izbicki, Jacob R., Windsor, John, Poulsen, Jakob Lykke, Frokjaer, Jens Brondum, Larino-Noia, Jose, Wang, Dan, Garcia, Julio Iglesias, Kalaitzakis, Evangelos, Wertheim-Tysarowska, Kararzyna, Kubota, Kensuke, Larusch, Jessica, Lerch, Markus M., Hu, Liang-Hao, Erkan, Mert, Machicado, Jorg D., Arvanitakis, Marianna, Buchler, Markus W., Levy, Marlon F., Heyman, Melvin B., Nojgaard, Camilla, Khashab, Mouen A., Delhaye, Myriam, Ogura, Takeshi, Okazaki, Kazuichi, Ghaneh, Paula, Banks, Peter A., Gupta, Pankaj, Papachristou, Georgios I., Michl, Patrick, Levy, Philippe, Pukitis, Aldis, Pezzilli, Raffaele, Baron, Ryan D., Amann, Stephen T., Schwarzenberg, Sarah Jane, Isaji, Shuiji, Olesen, Soren Schou, Novovic, Srdan, Hughes, Steven J., Werlin, Steven L., Gonska, Tanja, Gardner, Timothy B., Topazian, Mark D., Weiss, Frank Ulrich, Akshintala, Venakata S., Morinville, Veronique D., Rebours, Vinciane, Vincze, Aron, Singh, Vikesh K., Cui, Naiqiang, Zhang, Hong, Li, Zhao-shen, de Rijk, Florence E.M., van Veldhuisen, Charlotte L., Besselink, Marc G., van Hooft, Jeanin E., van Santvoort, Hjalmar C., van Geenen, Erwin J.M., Hegyi, Peter, Löhr, J-Matthias, Dominguez-Munoz, Juan E., de Jonge, Pieter Jan F., Bruno, Marco J., Verdonk, Robert C.

Source: In Pancreatology May 2022 22(4):457-465

Magnetic Resonance Imaging-Guided Transurethral Ultrasound Ablation of Prostate Cancer

Authors: Klotz, Laurence, Pavlovich, Christian P., Chin, Joseph, Hatiboglu, Gencay, Koch, Michael, Penson, David, Raman, Steven, Oto, Aytekin, Fütterer, Jurgen, Serrallach, Marc, Relle, James, Lotan, Yair, Heidenreich, Axel, Bonekamp, David, Haider, Masoom, Tirkes, Temel, Arora, Sandeep, Macura, Katarzyna J., Costa, Daniel N., Persigehl, Thorsten, Pantuck, Allan J., Bomers, Joyce, Burtnyk, Mathieu, Staruch, Robert, Eggener, Scott

Source: Journal of urology. 205(3):769-779

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184807458.0x000001&indx=1&recIds=ETOCvdc_100184807458.0x000001

Role of standardized reporting and novel imaging markers in chronic pancreatitis

Authors: Tirkes, Temel, Dasyam, Anil K., Shah, Zarine K., Fogel, Evan L.

Source: Current opinion in gastroenterology. 37(5):512-519

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100123809996.0x000001&indx=1&recIds=ETOCvdc_100123809996.0x000001

Advances for Managing Pancreatic Cystic Lesions: Integrating Imaging and AI Innovations.

Authors: Seyithanoglu, Deniz, Durak, Gorkem, Keles, Elif, Medetalibeyoglu, Alpay, Hong, Ziliang, Zhang, Zheyuan, Taktak, Yavuz B., Cebeci, Timurhan, Tiwari, Pallavi, Velichko, Yuri S., Yazici, Cemal, Tirkes, Temel, Miller, Frank H., Keswani, Rajesh N., Spampinato, Concetto, Wallace, Michael B., Bagci, Ulas

Source: Cancers; Dec2024, Vol. 16 Issue 24, p4268, 33p

Subject Terms: MEDICAL protocols, ARTIFICIAL intelligence, PANCREATIC cysts, PRECANCEROUS conditions, EARLY detection of cancer, ENDOSCOPIC ultrasonography, PANCREATIC tumors, COMPUTER-aided diagnosis, NEEDLE biopsy, SENSITIVITY & specificity (Statistics), DISEASE complications

Advanced MR Imaging of the Pancreas

Authors: Hill, Danielle V., Tirkes, Temel

Source: In Magnetic Resonance Imaging Clinics of North America August 2020 28(3):353-367

Tu1986 A FULLY AUTOMATIC AI SYSTEM FOR PANCREAS SEGMENTATION FROM MULTICENTER MRI SCANS

Authors: Zhang, Zheyuan, Bagci, Ulas, KELES, Elif, Vendrami, Camila Lopes, Jambawalikar, Sachin, Klatte, Derk C., Engels, Megan M., Bolan, Candice W., Agarunov, Emil, Gonda, Tamas A., Keswani, Rajesh N., Miller, Frank, Yazici, Cemal, Wallace, Michael B., Schoots, Ivo, Bruno, Marco J., Tirkes, Temel

Source: Gastroenterology. 164(6):S-1175-S-1175

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194456931.0x000001&indx=1&recIds=ETOCvdc_100194456931.0x000001

Cross-sectional imaging-based severity scoring of chronic pancreatitis: why it is necessary and how it can be done

Authors: Dasyam, Anil K., Shah, Zarine K., Tirkes, Temel, Dasyam, Navya, Borhani, Amir A.

Source: Abdominal radiology. 45(5):1447-1457

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167893490.0x000001&indx=1&recIds=ETOCvdc_100167893490.0x000001

Reporting of acute pancreatitis by radiologists-time for a systematic change with structured reporting template

Authors: Khurana, Aman, Nelson, Leslie W, Myers, Charles B, Akisik, Fatih, Jeffrey, Brooke R., Miller, Frank H., Mittal, Pardeep, Morgan, Desiree, Mortele, Koenraad, Poullos, Peter, Sahani, Dushyant, Sandrasegaran, Kumar, Tirkes, Temel, Zaheer, Atif, Patel, Bhavik N.

Source: Abdominal radiology. 45(5):1277-1289

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167893202.0x000001&indx=1&recIds=ETOCvdc_100167893202.0x000001

Advanced imaging techniques for chronic pancreatitis

Authors: Parakh, Anushri, Tirkes, Temel

Source: Abdominal radiology. 45(5):1420-1438

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167893540.0x000001&indx=1&recIds=ETOCvdc_100167893540.0x000001

Inter-observer variability of radiologists for Cambridge classification of chronic pancreatitis using CT and MRCP: results from a large multi-center study

Authors: Tirkes, Temel, Shah, Zarine K., Takahashi, Naoki, Grajo, Joseph R., Chang, Stephanie T., Wachsman, Ashley M., Mawad, Kareem, Farinas, Carlos A., Li, Liang, Appana, Savitri N., Conwell, Darwin L., Yadav, Dhiraj, Dasyam, Anil K.

Source: Abdominal radiology. 45(5):1481-1487

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167893076.0x000001&indx=1&recIds=ETOCvdc_100167893076.0x000001

Annular pancreas: endoscopic and pancreatographic findings from a tertiary referral ERCP center

Authors: Gromski, Mark A., Lehman, Glen A., Zyromski, Nicholas J., Watkins, James L., El Hajj, Ihab I., Tan, Damien, McHenry, Lee, Easler, Jeffrey J., Tirkes, Temel, Sherman, Stuart, Fogel, Evan L.

Source: In Gastrointestinal Endoscopy February 2019 89(2):322-328