Self-learning path integral hybrid Monte Carlo with mixed ab initio and machine learning potentials for modeling nuclear quantum effects in water

Authors: Thomsen, Bo, Nagai, Yuki, Kobayashi, Keita, Hamada, Ikutaro, Shiga, Motoyuki

Source: J. Chem. Phys. 161, 204109 (2024)

Subject Terms: Physics - Chemical Physics, Condensed Matter - Materials Science

Access URL: http://arxiv.org/abs/2411.10122

Inelastic Neutron Scattering of Hydrogen in Palladium Studied by Semiclassical Dynamics

Authors: Shiga, Motoyuki, Thomsen, Bo, Kimizuka, Hajime

Subject Terms: Physics - Chemical Physics

Access URL: http://arxiv.org/abs/2401.13874

Educational Interventions Involving Physical Manipulatives for Improving Children's Learning and Development: A Scoping Review

Authors: Byrne, Elizabeth M., Jensen, Hanne, Thomsen, Bo Stjerne, Ramchandani, Paul G.

Source: Review of Education. Aug 2023 11(2).

Peer Reviewed: Y

Page Count: 42

Descriptors: Manipulative Materials, Preschool Education, Elementary Education, Mathematics Education, Literacy Education, Science Education, Program Effectiveness, Young Children, Teaching Methods, Instructional Effectiveness

Researching Digital Inequalities in Children's Play with Technology in South Africa

Authors: Murris, Karin (ORCID 0000-0001-9613-7738), Scott, Fiona (ORCID 0000-0002-8689-2905), Stjerne Thomsen, Bo (ORCID 0000-0002-9292-6534), Dixon, Kerryn (ORCID 0000-0003-4748-6338), Giorza, Theresa (ORCID 0000-0003-1512-6741), Peers, Joanne (ORCID 0000-0002-1784-0191), Lawrence, Chanique (ORCID 0000-0003-0857-2436)

Source: Learning, Media and Technology. 2023 48(3):542-555.

Peer Reviewed: Y

Page Count: 14

Descriptors: Foreign Countries, Children, Play, Equal Education, Socioeconomic Status, Language Usage, Ethnicity, Sex, Educational Environment, Access to Computers, Information Technology, Elementary School Students, Preschool Children

Geographic Terms: United Kingdom (England), South Africa (Cape Town)

Theoretical study of cellobiose conversion by supported metal catalysts

Authors: Nakata, Yuto, Sasaki, Takehiko, Thomsen, Bo, Shiga, Motoyuki

Source: In Chemical Physics Letters 16 June 2024 845

Nuclear Quantum Effects on Autoionization of Water Isotopologues Studied by Ab Initio Path Integral Molecular Dynamics

Authors: Thomsen, Bo, Shiga, Motoyuki

Subject Terms: Physics - Chemical Physics, Condensed Matter - Materials Science, Physics - Computational Physics

Access URL: http://arxiv.org/abs/2101.12500

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping

Authors: Zhan Bujie, Fadista João, Thomsen Bo, Hedegaard Jakob, Panitz Frank, Bendixen Christian

Source: BMC Genomics, Vol 12, Iss 1, p 557 (2011)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/12/557; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/e06b33487d1144f0afc147b622652c28

Copy number variation in the bovine genome

Authors: Bendixen Christian, Holm Lars-Erik, Thomsen Bo, Fadista João

Source: BMC Genomics, Vol 11, Iss 1, p 284 (2010)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/11/284; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/493d555138104405bbcaf735f4fee36e

Molecular characterization and temporal expression profiling of presenilins in the developing porcine brain

Authors: Fredholm Merete, Holm Ida E, Bendixen Christian, Larsen Knud, Thomsen Bo, Madsen Lone B, Jørgensen Arne L, Nielsen Anders L

Source: BMC Neuroscience, Vol 8, Iss 1, p 72 (2007)

Subject Terms: Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571, Neurophysiology and neuropsychology, QP351-495

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2202/8/72; https://doaj.org/toc/1471-2202

Access URL: https://doaj.org/article/8fa1e2576e2b474da2662fb36080a854

Genome-wide association study identifies functional genomic variants associated with young stock survival in Nordic Red Dairy Cattle

Authors: Cai, Zexi ^*, Wu, Xiaoping, Thomsen, Bo, Lund, Mogens Sandø, Sahana, Goutam

Source: In Journal of Dairy Science November 2023 106(11):7832-7845

Structures of liquid and aqueous water isotopologues at ambient temperature from ab initio path integral simulationsElectronic supplementary information (ESI) available: Comparison of the radial distribution functions for H2O and D2O using 16 and 32 beads. Distribution of proton/deuteron/triton sharing coordinates in hydrogen bonds. See DOI: https://doi.org/10.1039/d2cp00499b

Authors: Thomsen, Bo, Shiga, Motoyuki

Source: Physical chemistry chemical physics. 24(18):10851-10859

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100149707807.0x000001&indx=1&recIds=ETOCvdc_100149707807.0x000001

TrAnnoScope: A Modular Snakemake Pipeline for Full-Length Transcriptome Analysis and Functional Annotation.

Authors: Pektas, Aysevil, Panitz, Frank, Thomsen, Bo

Source: Genes; Dec2024, Vol. 15 Issue 12, p1547, 15p

Subject Terms: ZEBRA finch, GENE expression, AMINO acid sequence, MODULAR design, GENE ontology

MicroRNA sequence variation can impact interactions with target mRNA in cattle

Authors: Hao, Dan, Wang, Xiao, Yang, Yu, Chen, Hong, Thomsen, Bo, Holm, Lars-Erik

Source: Gene. 868

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100188883639.0x000001&indx=1&recIds=ETOCvdc_100188883639.0x000001

Expression profiles of the MXD3 gene and association of sequence variants with growth traits in Xianan and Qinchuan cattle

Authors: Hao, Dan, Thomsen, Bo, Bai, Jiangsong, Peng, Shujun, Lan, Xianyong, Huang, Yongzhen, Wang, Xiao, Chen, Hong

Source: Veterinary medicine and science. 6(3):399-409

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107743173.0x000001&indx=1&recIds=ETOCvdc_100107743173.0x000001

Transcriptome dynamics during proliferation and differentiation of porcine primary satellite cells

Authors: Jensen, Jeanette H., Madsen, Lone B., Panitz, Frank, Hornshøj, Henrik, Nielsen, Rasmus O., Bendixen, Christian, Oksbjerg, Niels, Thomsen, Bo

Source: In Gene Reports June 2017 7:169-175

MicroRNA-guided prioritization of genome-wide association signals reveals the importance of microRNA-target gene networks for complex traits in cattle

Authors: Fang, Lingzhao, Sørensen, Peter, Sahana, Goutam, Panitz, Frank, Su, Guosheng, Zhang, Shengli, Yu, Ying, Li, Bingjie, Ma, Li, Liu, George, Lund, Mogens, Thomsen, Bo

Source: Scientific reports. 8(1):1-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171398553.0x000001&indx=1&recIds=ETOCvdc_100171398553.0x000001

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Authors: Bouwman, Aniek, Daetwyler, Hans, Chamberlain, Amanda, Ponce, Carla, Sargolzaei, Mehdi, Schenkel, Flavio, Sahana, Goutam, Govignon-Gion, Armelle, Boitard, Simon, Dolezal, Marlies, Pausch, Hubert, Brøndum, Rasmus, Bowman, Phil, Thomsen, Bo, Guldbrandtsen, Bernt, Lund, Mogens, Servin, Bertrand, Garrick, Dorian, Reecy, James, Vilkki, Johanna, Bagnato, Alessandro, Wang, Min, Hoff, Jesse, Schnabel, Robert, Taylor, Jeremy, Vinkhuyzen, Anna, Panitz, Frank, Bendixen, Christian, Holm, Lars-Erik, Gredler, Birgit, Hozé, Chris, Boussaha, Mekki, Sanchez, Marie-Pierre, Rocha, Dominique, Capitan, Aurelien, Tribout, Thierry, Barbat, Anne, Croiseau, Pascal, Drögemüller, Cord, Jagannathan, Vidhya, Vander Jagt, Christy, Crowley, John, Bieber, Anna, Purfield, Deirdre, Berry, Donagh, Emmerling, Reiner, Götz, Kay-Uwe, Frischknecht, Mirjam, Russ, Ingolf, Sölkner, Johann, Van Tassell, Curtis, Fries, Ruedi, Stothard, Paul, Veerkamp, Roel, Boichard, Didier, Goddard, Mike, Hayes, Ben

Source: Nature genetics. 50(3):362-367

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100114614176.0x000001&indx=1&recIds=ETOCvdc_100114614176.0x000001

Ab initio study of nuclear quantum effects on sub- and supercritical water.

Authors: Thomsen, Bo¹ (AUTHOR) thomsen.bo@jaea.go.jp, Shiga, Motoyuki¹ (AUTHOR) shiga.motoyuki@jaea.go.jp

Source: Journal of Chemical Physics. 11/21/2021, Vol. 115 Issue 19, p1-11. 11p.

Subject Terms: *SUPERCRITICAL water, *RADIAL distribution function, *HYDROGEN bonding, *MOLECULAR dynamics, *PATH integrals, *WATER distribution

MicroRNA bta-miR-365-3p inhibits proliferation but promotes differentiation of primary bovine myoblasts by targeting the activin A receptor type I

Authors: Hao, Dan, Wang, Xiaogang, Wang, Xiao, Thomsen, Bo, Yang, Yu, Lan, Xianyong, Huang, Yongzhen, Chen, Hong

Source: Journal of animal science and biotechnology. 12(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191416710.0x000001&indx=1&recIds=ETOCvdc_100191416710.0x000001

Insights into the Evolution of Longevity from the Bowhead Whale Genome

Authors: Keane, Michael, Semeiks, Jeremy, Webb, Andrew E., Li, Yang I., Quesada, Víctor, Craig, Thomas, Madsen, Lone Bruhn, van Dam, Sipko, Brawand, David, Marques, Patrícia I., Michalak, Pawel, Kang, Lin, Bhak, Jong, Yim, Hyung-Soon, Grishin, Nick V., Nielsen, Nynne Hjort, Heide-Jørgensen, Mads Peter, Oziolor, Elias M., Matson, Cole W., Church, George M., Stuart, Gary W., Patton, John C., George, J. Craig, Suydam, Robert, Larsen, Knud, López-Otín, Carlos, O’Connell, Mary J., Bickham, John W., Thomsen, Bo, de Magalhães, João Pedro

Source: In Cell Reports 6 January 2015 10(1):112-122