Transcriptional profiling during infection of potato NLRs and Phytophthora infestans effectors using cDNA enrichment sequencing

Authors: Amanpreet Kaur, Vikrant Singh, Stephen Byrne, Miles Armstrong, Thomas M. Adams, Brian Harrower, Eleanor Gilroy, Ewen Mullins, Ingo Hein

Source: Crop Journal, Vol 13, Iss 1, Pp 31-40 (2025)

Subject Terms: RxLR effector, NLRs, Late blight, Potato, cDNA sequencing, RenSeq, Agriculture, Agriculture (General), S1-972

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S221451412400196X; https://doaj.org/toc/2214-5141

Access URL: https://doaj.org/article/b763b7e6a3f243e2bb72da38df69bba8

Correction: HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes

Authors: Thomas M. Adams, Moray Smith, Yuhan Wang, Lynn H. Brown, Micha M. Bayer, Ingo Hein

Source: BMC Bioinformatics, Vol 26, Iss 1, Pp 1-2 (2025)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/74d2ce97c6c54bc5be7caa91cd3e1b52

HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes

Authors: Thomas M. Adams, Moray Smith, Yuhan Wang, Lynn H. Brown, Micha M. Bayer, Ingo Hein

Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-10 (2023)

Subject Terms: SMRT-AgRenSeq-d, dRenSeq, HiFi sequencing, Snakemake, High-throughput, Plant disease resistance, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/c7d21a50de1541a7bbd43aad155285e3

Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP

Authors: Thomas M. Adams, Tjelvar S. G. Olsson, Ricardo H. Ramírez-González, Ruth Bryant, Rosie Bryson, Pablo Eduardo Campos, Paul Fenwick, David Feuerhelm, Charlotte Hayes, Tina Henriksson, Amelia Hubbard, Radivoje Jevtić, Christopher Judge, Matthew Kerton, Jacob Lage, Clare M. Lewis, Christine Lilly, Udi Meidan, Dario Novoselović, Colin Patrick, Ruth Wanyera, Diane G. O. Saunders

Source: BMC Genomics, Vol 22, Iss 1, Pp 1-10 (2021)

Subject Terms: RNA-Seq, expVIP, Gene expression browser, Wheat yellow rust, Puccinia striiformis f. sp. tritici, Transcriptomics, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/f1c246df504f44cc9b988ee9d7198c11

Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races

Authors: Thomas M. Adams, Andrew D. Armitage, Maria K. Sobczyk, Helen J. Bates, Javier F. Tabima, Brent A. Kronmiller, Brett M. Tyler, Niklaus J. Grünwald, Jim M. Dunwell, Charlotte F. Nellist, Richard J. Harrison

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: red core, oomycete, RNA-Seq, host–microbe interactions, nanopore sequencing, population resequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.00490/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/16486536e90043abb99bea0e25e8e69f

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.