SnakeCube: containerized and automated pipeline for de novo genome assembly in HPC environments

Authors: Nelina Angelova, Theodoros Danis, Jacques Lagnel, Costas S. Tsigenopoulos, Tereza Manousaki

Source: BMC Research Notes, Vol 15, Iss 1, Pp 1-6 (2022)

Subject Terms: Assembly, Container, Pipeline, Genome, de-novo, Medicine, Biology (General), QH301-705.5, Science (General), Q1-390

File Description: electronic resource

Relation: https://doaj.org/toc/1756-0500

Access URL: https://doaj.org/article/dd7d3cc9e3a54a01a142540286a998a4

Transcriptome analysis of flathead grey mullet (Mugil cephalus) ovarian development induced by recombinant gonadotropin hormones

Authors: Sandra Ramos-Júdez, Theodoros Danis, Nelina Angelova, Alexandros Tsakogiannis, Ignacio Giménez, Costas S. Tsigenopoulos, Neil Duncan, Tereza Manousaki

Source: Frontiers in Physiology, Vol 13 (2022)

Subject Terms: recombinant gonadotropin hormones, recombinant follicle-stimulating hormone, recombinant luteinizing hormone, induced vitellogenesis, ovarian RNA-seq, Mugil cephalus, Physiology, QP1-981

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphys.2022.1033445/full; https://doaj.org/toc/1664-042X

Access URL: https://doaj.org/article/f6b052a1a868476e9c05ab307f397e14

Genome Analysis of Lagocephalus sceleratus: Unraveling the Genomic Landscape of a Successful Invader

Authors: Theodoros Danis, Vasileios Papadogiannis, Alexandros Tsakogiannis, Jon B. Kristoffersen, Daniel Golani, Dimitris Tsaparis, Aspasia Sterioti, Panagiotis Kasapidis, Georgios Kotoulas, Antonios Magoulas, Costas S. Tsigenopoulos, Tereza Manousaki

Source: Frontiers in Genetics, Vol 12 (2021)

Subject Terms: silver-cheeked toadfish, synteny, phylogenomic analyses, gene families, tetrodotoxin, genome evolution, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.790850/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/2c42e22c3f98482ba10368faf41281b5

First linkage maps and a pilot QTL analysis for early growth performance in common dentex (Dentex dentex) and sharpsnout seabream (Diplodus puntazzo)

Authors: Stavroula Oikonomou, Alexandros Tsakogiannis, Christina Kriaridou, Theodoros Danis, Tereza Manousaki, Dimitris Chatziplis, Nikos Papandroulakis, Constantinos C. Mylonas, Alexandros Triantafyllidis, Costas S. Tsigenopoulos

Source: Aquaculture Reports, Vol 21, Iss , Pp 100855- (2021)

Subject Terms: Common dentex (Dentex dentex), Sharpsnout seabream (Diplodus puntazzo), QTL analysis, Linkage analysis, Comparative analysis, Aquaculture. Fisheries. Angling, SH1-691

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352513421002714; https://doaj.org/toc/2352-5134

Access URL: https://doaj.org/article/99ce875857314eda8500a26b3bfd9b9c

Malpigmentation of Common Sole (Solea solea) during Metamorphosis Is Associated with Differential Synaptic-Related Gene Expression

Authors: Menelaos Kavouras, Emmanouil E. Malandrakis, Ewout Blom, Kyriaki Tsilika, Theodoros Danis, Panagiota Panagiotaki, Athanasios Exadactylos

Source: Animals, Vol 11, Iss 8, p 2273 (2021)

Subject Terms: Solea solea, next-generation sequencing, pigmentation, ambicoloration, ion channels, synapses, Veterinary medicine, SF600-1100, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2615/11/8/2273; https://doaj.org/toc/2076-2615

Access URL: https://doaj.org/article/1c99ca02e4ef48a8af95e8a5a52747d8