CloveBiotech: Complex structural variant calling for engineered microbial strains

Authors: Schusterbauer Veronika, Reinprecht Pierre, Thallinger Gerhard G.

Source: Current Directions in Biomedical Engineering, Vol 9, Iss 2, Pp 34-38 (2023)

Subject Terms: structural variations, genomic rearrangements, genetic engineering, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2364-5504

Access URL: https://doaj.org/article/c21d438bf0774d7fa40afb16fd9fb0ec

Non-linear fitting with joint spatial regularization in Arterial Spin Labeling

Authors: Maier, Oliver, Spann, Stefan M, Pinter, Daniela, Gattringer, Thomas, Hinteregger, Nicole, Thallinger, Gerhard G., Enzinger, Christian, Pfeuffer, Josef, Bredies, Kristian, Stollberger, Rudolf

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Electrical Engineering and Systems Science - Signal Processing, 92C55, 68U10, 94A12

Access URL: http://arxiv.org/abs/2009.05409

Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions

Authors: Damiani, Tito, Bonciarelli, Stefano, Thallinger, Gerhard G., Koehler, Nikolai, Krettler, Christoph A., Salihoğlu, Arif K., Korf, Ansgar, Pauling, Josch K., Pluskal, Tomáš, Ni, Zhixu

Source: Analytical chemistry. 95(1):287-303

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631552259&indx=1&recIds=ETOCRN631552259

Identification and Quantification of Oxidized Lipids in LC-MS Lipidomics Data
Health informatics meets digital health (14th conference)

Authors: Krettler, Christoph A., Hartler, Jürgen, Thallinger, Gerhard G.

Source: Studies in health technology and informatics. 271:39-48

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606400972&indx=1&recIds=ETOCCN606400972

A local platform for user-friendly FAIR data management and reproducible analytics

Authors: Wieser, Florian, Stryeck, Sarah, Lang, Konrad, Hahn, Christoph, Thallinger, Gerhard G., Feichtinger, Julia, Hack, Philipp, Stepponat, Manfred, Merchant, Nirav, Lindstaedt, Stefanie ^**, Oberdorfer, Gustav ^*

Source: In Journal of Biotechnology 20 November 2021 341:43-50

A Comprehensive FXR Signaling Atlas Derived from Pooled ChIP-seq Data
Health informatics meets digital health (Conference)

Authors: Jungwirth, Emilian, Panzitt, Katrin, Marschall, Hanns-Ulrich, Wagner, Martin, Thallinger, Gerhard G.

Source: Studies in health technology and informatics. 260:105-112

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN605636675&indx=1&recIds=ETOCCN605636675

FXR-dependent Rubicon induction impairs autophagy in models of human cholestasis

Authors: Panzitt, Katrin, Jungwirth, Emilian, Krones, Elisabeth, Lee, Jae Man, Pollheimer, Marion, Thallinger, Gerhard G., Kolb-Lenz, Dagmar, Xiao, Rui, Thorell, Anders, Trauner, Michael, Fickert, Peter, Marschall, Hanns-Ulrich, Moore, David D., Wagner, Martin

Source: In Journal of Hepatology June 2020 72(6):1122-1131

BMP7 aberrantly induced in the psoriatic epidermis instructs inflammation-associated Langerhans cells

Authors: Borek, Izabela, Köffel, René, Feichtinger, Julia, Spies, Melanie, Glitzner-Zeis, Elisabeth, Hochgerner, Mathias, Sconocchia, Tommaso, Krump, Corinna, Tam-Amersdorfer, Carmen, Passegger, Christina, Benezeder, Theresa, Tittes, Julia, Redl, Anna, Painsi, Clemens, Thallinger, Gerhard G., Wolf, Peter, Stary, Georg, Sibilia, Maria, Strobl, Herbert

Source: In The Journal of Allergy and Clinical Immunology April 2020 145(4):1194-1207

Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells

Authors: Speziali, Giulia, Liesinger, Laura, Gindlhuber, Juergen, Leopold, Christina, Pucher, Bettina, Brandi, Jessica, Castagna, Annalisa, Tomin, Tamara, Krenn, Petra, Thallinger, Gerhard G., Olivieri, Oliviero, Martinelli, Nicola, Kratky, Dagmar, Schittmayer, Matthias, Birner-Gruenberger, Ruth, Cecconi, Daniela

Source: In Journal of Proteomics 15 June 2018 181:118-130

Phylogenomics of trophically diverse cichlids disentangles processes driving adaptive radiation and repeated trophic transitions

Authors: Singh, Pooja, Irisarri, Iker, Torres‐Dowdall, Julián, Thallinger, Gerhard G., Svardal, Hannes, Lemmon, Emily Moriarty, Lemmon, Alan R., Koblmüller, Stephan, Meyer, Axel, Sturmbauer, Christian

Source: Ecology and evolution. 12(7)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165516274.0x000001&indx=1&recIds=ETOCvdc_100165516274.0x000001

Habitat conditions and not moss composition mediate microbial community structure in Swiss peatlands.

Authors: Korn, Rachel, Berg, Christian, Bersier, Louis‐Félix, Gray, Sarah M., Thallinger, Gerhard G.

Source: Environmental Microbiology; May2024, Vol. 26 Issue 5, p1-16, 16p

Subject Terms: MICROBIAL communities, HABITATS, STRUCTURAL equation modeling, PEATLANDS, MOSSES, ECOSYSTEM services

Geographic Terms: SWITZERLAND

Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors

Authors: Vogl, Thomas, Sturmberger, Lukas, Fauland, Pia C., Hyden, Patrick, Fischer, Jasmin E., Schmid, Christian, Thallinger, Gerhard G., Geier, Martina, Glieder, Anton

Source: Biotechnology and bioengineering. 115(4):1037-1050

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100083686669.0x000001&indx=1&recIds=ETOCvdc_100083686669.0x000001

Deletion of Adipose Triglyceride Lipase Links Triacylglycerol Accumulation to a More-Aggressive Phenotype in A549 Lung Carcinoma Cells

Authors: Tomin, Tamara, Fritz, Katarina, Gindlhuber, Juergen, Waldherr, Linda, Pucher, Bettina, Thallinger, Gerhard G., Nomura, Daniel K., Schittmayer, Matthias, Birner-Gruenberger, Ruth

Source: Journal of proteome research. 17(4):1415-1425

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN615525842&indx=1&recIds=ETOCRN615525842

Gene and miRNA expression in giant cell arteritis—a concise systematic review of significantly modified studies

Authors: Kuret, Tadeja, Burja, Blaž, Feichtinger, Julia, Thallinger, Gerhard G., Frank-Bertoncelj, Mojca, Lakota, Katja, Žigon, Polona, Sodin-Semrl, Snezna, Čučnik, Saša, Tomšič, Matija, Hočevar, Alojzija

Source: Clinical rheumatology. 38(2):307-316

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100126334014.0x000001&indx=1&recIds=ETOCvdc_100126334014.0x000001

Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients

Authors: Burja, Blaž, Feichtinger, Julia, Lakota, Katja, Thallinger, Gerhard G., Sodin-Semrl, Snezna, Kuret, Tadeja, Rotar, Žiga, Ješe, Rok, Žigon, Polona, Čučnik, Saša, Mali, Polonca, Praprotnik, Sonja, Tomšič, Matija, Hočevar, Alojzija

Source: Clinical rheumatology. 38(2):317-329

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100126333935.0x000001&indx=1&recIds=ETOCvdc_100126333935.0x000001

Molecular Profiling of Phagocytic Immune Cells in Anopheles gambiae Reveals Integral Roles for Hemocytes in Mosquito Innate Immunity

Authors: Smith, Ryan C. ^{‡, **}, King, Jonas G. ^{‡, ‡‡}, Tao, Dingyin ^{‡, §§}, Zeleznik, Oana A. ^{§, ¶, ‖}, Brando, Clara ^‡, Thallinger, Gerhard G. ^{§, ¶, ‖}, Dinglasan, Rhoel R. ^{‡, ¶¶, ‖‖}

Source: In Molecular & Cellular Proteomics November 2016 15(11):3373-3387

map of mass spectrometry-based in silico fragmentation prediction and compound identification in metabolomics.

Authors: Krettler, Christoph A^1,2 (AUTHOR) c.krettler@gmail.com, Thallinger, Gerhard G^1,2 (AUTHOR) c.krettler@gmail.com

Source: Briefings in Bioinformatics. Nov2021, Vol. 22 Issue 6, p1-25. 25p.

Subject Terms: *MASS spectrometry, *METABOLOMICS, *QUANTUM chemistry, *MACHINE learning, *INDIVIDUALIZED medicine, *MASS spectrometers, *BOTTLENECKS (Manufacturing)

Expert system for a neurosurgical clinic — Standardization and optimization of the interface between clinical information retrieval system and expert system

Authors: Hirsch, Bernhard, Thallinger, Gerhard G., Maresch, Helfid

Source: 1992 14th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Engineering in Medicine and Biology Society, 1992 14th Annual International Conference of the IEEE. 3:860-861 Oct, 1992

Relation: 1992 14th Annual International Conference of the IEEE Engineering in Medicine and Biology Society

Expert system for a neurosurgical clinic — Computer aided knowledge acquisition and maintenance

Authors: Thallinger, Gerhard G., Auer, Ludwig M., Hirsch, Bernhard, Maresch, Helfrid

Source: 1992 14th Annual International Conference of the IEEE Engineering in Medicine and Biology Society Engineering in Medicine and Biology Society, 1992 14th Annual International Conference of the IEEE. 3:910-911 Oct, 1992

Relation: 1992 14th Annual International Conference of the IEEE Engineering in Medicine and Biology Society

Human Sterols Are Overproduced, Stored and Excreted in Yeasts.

Authors: Radkohl, Astrid, Schusterbauer, Veronika, Bernauer, Lukas, Rechberger, Gerald N., Wolinski, Heimo, Schittmayer, Matthias, Birner-Gruenberger, Ruth, Thallinger, Gerhard G., Leitner, Erich, Baeck, Melanie, Pichler, Harald, Emmerstorfer-Augustin, Anita

Source: International Journal of Molecular Sciences; Jan2024, Vol. 25 Issue 2, p781, 22p

Subject Terms: STEROLS, UNSATURATED fatty acids, ATP-binding cassette transporters, YEAST, PHOSPHATIDYLSERINES, PHYTOSTEROLS