Brain-phenotype predictions of language and executive function can survive across diverse real-world data: Dataset shifts in developmental populations

Authors: Adkinson, Brendan D., Rosenblatt, Matthew, Dadashkarimi, Javid, Tejavibulya, Link, Jiang, Rongtao, Noble, Stephanie, Scheinost, Dustin

Source: In Developmental Cognitive Neuroscience December 2024 70

Machine Learning and Prediction in Fetal, Infant, and Toddler Neuroimaging: A Review and Primer

Authors: Scheinost, Dustin, Pollatou, Angeliki, Dufford, Alexander J., Jiang, Rongtao, Farruggia, Michael C., Rosenblatt, Matthew, Peterson, Hannah, Rodriguez, Raimundo X., Dadashkarimi, Javid, Liang, Qinghao, Dai, Wei, Foster, Maya L., Camp, Chris C., Tejavibulya, Link, Adkinson, Brendan D., Sun, Huili, Ye, Jean, Cheng, Qi, Spann, Marisa N., Rolison, Max, Noble, Stephanie, Westwater, Margaret L.

Source: Biological psychiatry. 93(10):893-904

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194882431.0x000001&indx=1&recIds=ETOCvdc_100194882431.0x000001

Cross Atlas Remapping via Optimal Transport (CAROT): Creating connectomes for different atlases when raw data is not available

Authors: Dadashkarimi, Javid, Karbasi, Amin, Liang, Qinghao, Rosenblatt, Matthew, Noble, Stephanie, Foster, Maya, Rodriguez, Raimundo, Adkinson, Brendan, Ye, Jean, Sun, Huili, Camp, Chris, Farruggia, Michael, Tejavibulya, Link, Dai, Wei, Jiang, Rongtao, Pollatou, Angeliki, Scheinost, Dustin

Source: In Medical Image Analysis August 2023 88

Leveraging edge-centric networks complements existing network-level inference for functional connectomes

Authors: Rodriguez, Raimundo X., Noble, Stephanie, Tejavibulya, Link, Scheinost, Dustin

Source: In NeuroImage 1 December 2022 264

Functional Connectome–Based Predictive Modeling in Autism

Authors: Horien, Corey, Floris, Dorothea L., Greene, Abigail S., Noble, Stephanie, Rolison, Max, Tejavibulya, Link, O’Connor, David, McPartland, James C., Scheinost, Dustin, Chawarska, Katarzyna, Lake, Evelyn M.R., Constable, R. Todd

Source: In Biological Psychiatry 15 October 2022 92(8):626-642

Large-scale differences in functional organization of left- and right-handed individuals using whole-brain, data-driven analysis of connectivity

Authors: Tejavibulya, Link, Peterson, Hannah, Greene, Abigail, Gao, Siyuan, Rolison, Max, Noble, Stephanie, Scheinost, Dustin

Source: In NeuroImage 15 May 2022 252

Power and reproducibility in the external validation of brain-phenotype predictions.

Authors: Rosenblatt, Matthew, Tejavibulya, Link, Sun, Huili, Camp, Chris C., Khaitova, Milana, Adkinson, Brendan D., Jiang, Rongtao, Westwater, Margaret L., Noble, Stephanie, Scheinost, Dustin

Source: Nature Human Behaviour; Oct2024, Vol. 8 Issue 10, p2018-2033, 16p

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Data leakage inflates prediction performance in connectome-based machine learning models.

Authors: Rosenblatt, Matthew, Tejavibulya, Link, Jiang, Rongtao, Noble, Stephanie, Scheinost, Dustin

Source: Nature Communications; 2/28/2024, Vol. 15 Issue 1, p1-15, 15p

Subject Terms: MACHINE learning, MACHINE performance, PREDICTIVE validity, FEATURE selection, LEAKAGE, PREDICTION models

Heightened sensitivity to high-calorie foods in children at risk for obesity: insights from behavior, neuroimaging, and genetics.

Authors: Rapuano, Kristina M., Tejavibulya, Link, Dinc, Eda Naz, Li, Anfei, Davis, Haley, Korn, Rachel, Leibel, Rudolph L., Walsh, B. Timothy, Ranzenhofer, Lisa, Rosenbaum, Michael, Casey, B. J., Mayer, Laurel

Source: Brain Imaging & Behavior; Oct2023, Vol. 17 Issue 5, p461-470, 10p

Big data approaches to identifying sex differences in long-term memory

Authors: Tejavibulya, Link, Scheinost, Dustin

Source: Cognitive neuroscience. 12(3-4):185-186

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131006344.0x000001&indx=1&recIds=ETOCvdc_100131006344.0x000001

Predicting Transdiagnostic Social Impairments in Childhood Using Connectome-Based Predictive Modeling

Authors: Dufford, Alexander, Kimble, Violet, Tejavibulya, Link, Dadashkarimi, Javid, Scheinost, Dustin

Source: Biological psychiatry. 91(S):S87-S87

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187568496.0x000001&indx=1&recIds=ETOCvdc_100187568496.0x000001

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Foxa2 and Pet1 Direct and Indirect Synergy Drive Serotonergic Neuronal Differentiation.

Authors: Aydin, Begüm, Sierk, Michael, Moreno-Estelles, Mireia, Tejavibulya, Link, Kumar, Nikathan, Flames, Nuria, Mahony, Shaun, Mazzoni, Esteban O.

Source: Frontiers in Neuroscience; 6/20/2022, Vol. 16, p1-18, 18p

Subject Terms: NEURONAL differentiation, EMBRYONIC stem cells, TRANSCRIPTION factors, REGENERATIVE medicine, CELL differentiation

A protocol for working with open-source neuroimaging datasets

Authors: Horien, Corey, Lee, Kangjoo, Westwater, Margaret L., Noble, Stephanie, Tejavibulya, Link, Kayani, Teimur, Constable, R. Todd, Scheinost, Dustin

Source: In STAR Protocols 18 March 2022 3(1)

Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Authors: Anousheh, Nasim, Arnatkeviciute, Aurina, Auzias, Guillaume, Bachar, Dipankar, Bannier, Elise, Basanisi, Ruggero, Basavaraj, Arshitha, Bedini, Marco, Bellec, Pierre, Benn, R. Austin, Berluti, Kathryn, Bollmann, Steffen, Bollmann, Saskia, Bradley, Claire, Brown, Jesse, Buchweitz, Augusto, Callahan, Patrick, Chan, Micaela Y., Chandio, Bramsh Q., Cheng, Theresa, Chopra, Sidhant, Chung, Ai Wern, Close, Thomas G., Combrisson, Etienne, Cona, Giorgia, Constable, R. Todd, Cury, Claire, Dadi, Kamalaker, Damasceno, Pablo F., Das, Samir, De Vico Fallani, Fabrizio, DeStasio, Krista, Dickie, Erin W., Dorfschmidt, Lena, Duff, Eugene P., DuPre, Elizabeth, Dziura, Sarah, Esper, Nathalia B., Esteban, Oscar, Fadnavis, Shreyas, Flandin, Guillaume, Flannery, Jessica E., Flournoy, John, Forkel, Stephanie J., Franco, Alexandre R., Ganesan, Saampras, Gao, Siyuan, García Alanis, José C., Garyfallidis, Eleftherios, Glatard, Tristan, Glerean, Enrico, Gonzalez-Castillo, Javier, Gould van Praag, Cassandra D., Greene, Abigail S., Gupta, Geetika, Hahn, Catherine Alice, Halchenko, Yaroslav O., Handwerker, Daniel, Hartmann, Thomas S., Hayot-Sasson, Valérie, Heunis, Stephan, Hoffstaedter, Felix, Hohmann, Daniela M., Horien, Corey, Ioanas, Horea-Ioan, Iordan, Alexandru, Jiang, Chao, Joseph, Michael, Kai, Jason, Karakuzu, Agah, Kennedy, David N., Keshavan, Anisha, Khan, Ali R., Kiar, Gregory, Klink, P. Christiaan, Koppelmans, Vincent, Koudoro, Serge, Laird, Angela R., Langs, Georg, Laws, Marissa, Licandro, Roxane, Liew, Sook-Lei, Lipic, Tomislav, Litinas, Krisanne, Lurie, Daniel J., Lussier, Désirée, Madan, Christopher R., Mais, Lea-Theresa, Mansour L, Sina, Manzano-Patron, J.P., Maoutsa, Dimitra, Marcon, Matheus, Margulies, Daniel S., Marinato, Giorgio, Marinazzo, Daniele, Markiewicz, Christopher J., Maumet, Camille, Meneguzzi, Felipe, Meunier, David, Milham, Michael P., Mills, Kathryn L., Momi, Davide, Moreau, Clara A., Motala, Aysha, Moxon-Emre, Iska, Nichols, Thomas E., Nielson, Dylan M., Nilsonne, Gustav, Novello, Lisa, O’Brien, Caroline, Olafson, Emily, Oliver, Lindsay D., Onofrey, John A., Orchard, Edwina R., Oudyk, Kendra, Park, Patrick J., Parsapoor, Mahboobeh, Pasquini, Lorenzo, Peltier, Scott, Pernet, Cyril R., Pienaar, Rudolph, Pinheiro-Chagas, Pedro, Poline, Jean-Baptiste, Qiu, Anqi, Quendera, Tiago, Rice, Laura C., Rocha-Hidalgo, Joscelin, Rutherford, Saige, Scharinger, Mathias, Scheinost, Dustin, Shariq, Deena, Shaw, Thomas B., Siless, Viviana, Simmonite, Molly, Sirmpilatze, Nikoloz, Spence, Hayli, Sprenger, Julia, Stajduhar, Andrija, Szinte, Martin, Takerkart, Sylvain, Tam, Angela, Tejavibulya, Link, Thiebaut de Schotten, Michel, Thome, Ina, Tomaz da Silva, Laura, Traut, Nicolas, Uddin, Lucina Q., Vallesi, Antonino, VanMeter, John W., Vijayakumar, Nandita, di Oleggio Castello, Matteo Visconti, Vohryzek, Jakub, Vukojević, Jakša, Whitaker, Kirstie Jane, Whitmore, Lucy, Wideman, Steve, Witt, Suzanne T., Xie, Hua, Xu, Ting, Yan, Chao-Gan, Yeh, Fang-Cheng, Yeo, B.T. Thomas, Zuo, Xi-Nian, Gau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L., Bilgin, Isil P., Yang, Yu-Fang, Huntenburg, Julia M., Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn A., Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P., Huijser, Dorien C., Sandström, Malin S., Herholz, Peer, Nastase, Samuel A., Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael, Bassil, Yasmine, Brooks, Paula P., Mancini, Matteo, Shine, James M., O’Connor, David, Xie, Xihe, Poggiali, Davide, Friedrich, Patrick, Heinsfeld, Anibal S., Riedl, Lydia, Toro, Roberto, Caballero-Gaudes, César, Eklund, Anders, Garner, Kelly G., Nolan, Christopher R., Demeter, Damion V., Barrios, Fernando A., Merchant, Junaid S., McDevitt, Elizabeth A., Oostenveld, Robert, Craddock, R. Cameron, Rokem, Ariel, Doyle, Andrew, Ghosh, Satrajit S., Nikolaidis, Aki, Stanley, Olivia W., Uruñuela, Eneko

Source: In Neuron 2 June 2021 109(11):1769-1775