Thousands of small, novel genes predicted in global phage genomes

Authors: Sengupta, Aditi, Sczyrba, Alexander, Maria da Silva, Aline, Buchan, Alison, Gaudin, Amelie, Brune, Andreas, Hirsch, Ann M., Neumann, Anthony, Shade, Ashley, Visel, Axel, Campbell, Barbara, Baker, Brett, Hedlund, Brian P., Crump, Byron C., Currie, Cameron, Kelly, Charlene, Craft, Chris, Hazard, Christina, Francis, Christopher, Schadt, Christopher W., Averill, Colin, Mobilian, Courtney, Buckley, Dan, Hunt, Dana, Noguera, Daniel, Beck, David, Valentine, David L., Walsh, David, Sumner, Dawn, Lymperopoulou, Despoina, Bhaya, Devaki, Bryant, Donald A., Morrison, Elise, Brodie, Eoin, Young, Erica, Lilleskov, Erik, Högfors-Rönnholm, Eva, Chen, Feng, Stewart, Frank, Nicol, Graeme W., Teeling, Hanno, Beller, Harry R., Dionisi, Hebe, Liao, Hui-Ling, Beman, J. Michael, Stegen, James, Tiedje, James, Jansson, Janet, VanderGheynst, Jean, Norton, Jeanette, Dangl, Jeff, Blanchard, Jeffrey, Bowen, Jennifer, Macalady, Jennifer, Pett-Ridge, Jennifer, Rich, Jeremy, Payet, Jérôme P., Gladden, John D., Raff, Jonathan D., Klassen, Jonathan L., Tarn, Jonathan, Neufeld, Josh, Gravuer, Kelly, Hofmockel, Kirsten, Chen, Ko-Hsuan, Konstantinidis, Konstantinos, DeAngelis, Kristen M., Partida-Martinez, Laila P., Meredith, Laura, Chistoserdova, Ludmila, Moran, Mary Ann, Scarborough, Matthew, Schrenk, Matthew, Sullivan, Matthew, David, Maude, O'Malley, Michelle A., Medina, Monica, Habteselassie, Mussie, Ward, Nicholas D., Pietrasiak, Nicole, Mason, Olivia U., Sorensen, Patrick O., Estrada de los Santos, Paulina, Baldrian, Petr, McKay, R. Michael, Simister, Rachel, Stepanauskas, Ramunas, Neumann, Rebecca, Malmstrom, Rex, Cavicchioli, Ricardo, Kelly, Robert, Hatzenpichler, Roland, Stocker, Roman, Cattolico, Rose Ann, Ziels, Ryan, Vilgalys, Rytas, Blumer-Schuette, Sara, Crowe, Sean, Roux, Simon, Hallam, Steven, Lindow, Steven, Brawley, Susan H., Tringe, Susannah, Woyke, Tanja, Whitman, Thea, Bianchi, Thomas, Mock, Thomas, Donohue, Timothy, James, Timothy Y., Kalluri, Udaya C., Karaoz, Ulas, Denef, Vincent, Liu, Wen-Tso, Whitman, William, Ouyang, Yang, Fremin, Brayon J., Bhatt, Ami S., Kyrpides, Nikos C.

Source: In Cell Reports 21 June 2022 39(12)

Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans

Authors: Kappelmann, Lennart, Krüger, Karen, Hehemann, Jan-Hendrik, Harder, Jens, Markert, Stephanie, Unfried, Frank, Becher, Dörte, Shapiro, Nicole, Schweder, Thomas, Amann, Rudolf, Teeling, Hanno

Source: ISME journal. 13(1):76-91

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100099925681.0x000001&indx=1&recIds=ETOCvdc_100099925681.0x000001

Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae

Authors: Francis, T. Ben, Krüger, Karen, Fuchs, Bernhard M., Teeling, Hanno, Amann, Rudolf I.

Source: Systematic and applied microbiology. 42(1):41-53

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100075788024.0x000001&indx=1&recIds=ETOCvdc_100075788024.0x000001

Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota

Authors: Orellana, Luis, Francis, T., Krüger, Karen, Teeling, Hanno, Müller, Marie-Caroline, Fuchs, Bernhard, Konstantinidis, Konstantinos, Amann, Rudolf

Source: ISME journal. 13(12):3024-3036

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191003841.0x000001&indx=1&recIds=ETOCvdc_100191003841.0x000001

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes

Authors: Krüger, Karen, Chafee, Meghan, Francis, T., Glavina del Rio, Tijana, Becher, Dörte, Schweder, Thomas, Amann, Rudolf, Teeling, Hanno

Source: ISME journal. 13(11):2800-2816

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190851824.0x000001&indx=1&recIds=ETOCvdc_100190851824.0x000001

Alpha-glucans from bacterial necromass indicate an intra-population loop within the marine carbon cycle.

Authors: Beidler, Irena, Steinke, Nicola, Schulze, Tim, Sidhu, Chandni, Bartosik, Daniel, Zühlke, Marie-Katherin, Martin, Laura Torres, Krull, Joris, Dutschei, Theresa, Ferrero-Bordera, Borja, Rielicke, Julia, Kale, Vaikhari, Sura, Thomas, Trautwein-Schult, Anke, Kirstein, Inga V., Wiltshire, Karen H., Teeling, Hanno, Becher, Dörte, Bengtsson, Mia Maria, Hehemann, Jan-Hendrik

Source: Nature Communications; 5/14/2024, Vol. 15 Issue 1, p1-15, 15p

Subject Terms: CARBON cycle, ALGAL blooms, ENERGY conservation, BACTERIOPLANKTON, POLYSACCHARIDES, CARRIER proteins, BACTERIAL population, ZOOPLANKTON, MICROORGANISM populations

Marine particle microbiomes during a spring diatom bloom contain active sulfate-reducing bacteria.

Authors: Siebers, Robin, Schultz, Doreen, Farza, Mohamed S, Brauer, Anne, Zühlke, Daniela, Mücke, Pierre A, Wang, Fengqing, Bernhardt, Jörg, Teeling, Hanno, Becher, Dörte, Riedel, Katharina, Kirstein, Inga V, Wiltshire, Karen H, Hoff, Katharina J, Schweder, Thomas, Urich, Tim, Bengtsson, Mia M

Source: FEMS Microbiology Ecology; May2024, Vol. 100 Issue 5, p1-12, 12p

Subject Terms: SULFATE-reducing bacteria, SPRING, ALGAL blooms, PHYTOPLANKTON, ALGAL cells, CARBON sequestration, PHAEODACTYLUM tricornutum, DIATOMS

Unveiling the role of novel carbohydrate‐binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms.

Authors: Zühlke, Marie‐Katherin, Ficko‐Blean, Elizabeth, Bartosik, Daniel, Terrapon, Nicolas, Jeudy, Alexandra, Jam, Murielle, Wang, Fengqing, Welsch, Norma, Dürwald, Alexandra, Martin, Laura Torres, Larocque, Robert, Jouanneau, Diane, Eisenack, Tom, Thomas, François, Trautwein‐Schult, Anke, Teeling, Hanno, Becher, Dörte, Schweder, Thomas, Czjzek, Mirjam

Source: Environmental Microbiology; May2024, Vol. 26 Issue 5, p1-18, 18p

Subject Terms: ALGAL blooms, PROTEIN-protein interactions, MARINE bacteria, PHAEODACTYLUM tricornutum, BACTERIAL cell surfaces, BACTERIAL genomes, PHYTOPLANKTON

Particle-attached bacteria act as gatekeepers in the decomposition of complex phytoplankton polysaccharides.

Authors: Wang, Feng-Qing, Bartosik, Daniel, Sidhu, Chandni, Siebers, Robin, Lu, De-Chen, Trautwein-Schult, Anke, Becher, Dörte, Huettel, Bruno, Rick, Johannes, Kirstein, Inga V., Wiltshire, Karen H., Schweder, Thomas, Fuchs, Bernhard M., Bengtsson, Mia M., Teeling, Hanno, Amann, Rudolf I.

Source: Microbiome; 2/20/2024, Vol. 12 Issue 1, p1-20, 20p

Subject Terms: POLYSACCHARIDES, CARBON dioxide fixation, CARBON cycle, ALGAL blooms, BETA-glucans, PHYTOPLANKTON

Geographic Terms: TAIWAN

Ancestry and adaptive radiation of Bacteroidetes as assessed by comparative genomics

Authors: Munoz, Raul, Teeling, Hanno, Amann, Rudolf, Rosselló-Móra, Ramon

Source: Systematic and applied microbiology. 43(2)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100099896079.0x000001&indx=1&recIds=ETOCvdc_100099896079.0x000001

Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use

Authors: Kleiner, Manuel, Wentrup, Cecilia, Lott, Christian, Teeling, Hanno, Wetzel, Silke, Young, Jacque, Chang, Yun-Juan, Shah, Manesh, VerBerkmoes, Nathan C., Zarzycki, Jan, Fuchs, Georg, Markert, Stephanie, Hempel, Kristina, Voigt, Birgit, Becher, Dörte, Liebeke, Manuel, Lalk, Michael, Albrecht, Dirk, Hecker, Michael, Schweder, Thomas, Dubilier, Nicole

Source: Proceedings of the National Academy of Sciences of the United States of America, 2012 May 01. 109(19), 7148-7149.

Access URL: https://www.jstor.org/stable/41592980

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

Authors: Teeling, Hanno, Fuchs, Bernhard M., Becher, Dörte, Klockow, Christine, Gardebrecht, Antje, Bennke, Christin M., Kassabgy, Mariette, Huang, Sixing, Mann, Alexander ]., Waldmann, Jost, Weber, Marc, Klindworth, Anna, Otto, Andreas, Lange, Jana, Bernhardt, Jörg, Reinsch, Christine, Hecker, Michael, Peplies, Jörg, Bockelmann, Frank D., Callies, Ulrich, Gerdts, Gunnar, Wichels, Antje, Wiltshire, Karen H., Glöckner, Frank Oliver, Schweder, Thomas, Amann, Rudolf

Source: Science, 2012 May 01. 336(6081), 608-611.

Access URL: http://dx.doi.org/10.1126/science.1218344

Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones

Authors: Grote, Jana, Schott, Thomas, Bruckner, Christian G., Glöckner, Frank Oliver, Jost, Günter, Teeling, Hanno, Labrenz, Matthias, Jürgens, Klaus

Source: Proceedings of the National Academy of Sciences of the United States of America, 2012 Jan 01. 109(2), 506-510.

Access URL: https://www.jstor.org/stable/23076002

Characterization of a Marine Gammaproteobacterium Capable of Aerobic Anoxygenic Photosynthesis

Authors: Fuchs, Bernhard M., Spring, Stefan, Teeling, Hanno, Quast, Christian, Wulf, Jörg, Schattenhofer, Martha, Yan, Shi, Ferriera, Steve, Johnson, Justin, Glöckner, Frank Oliver, Amann, Rudolf

Source: Proceedings of the National Academy of Sciences of the United States of America, 2007 Feb . 104(8), 2891-2896.

Access URL: https://www.jstor.org/stable/25426570

Epiphytic common core bacteria in the microbiomes of co-located green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) macroalgae.

Authors: Lu, De-Chen, Wang, Feng-Qing, Amann, Rudolf I., Teeling, Hanno, Du, Zong-Jun

Source: Microbiome; 6/1/2023, Vol. 11 Issue 1, p1-22, 22p

Subject Terms: MARINE algae, ULVA, SACCHARINA, RED algae, BROWN algae, GREEN algae, CERAMIALES, LAMINARIA

Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom.

Authors: Sidhu, Chandni, Kirstein, Inga V., Meunier, Cédric L., Rick, Johannes, Fofonova, Vera, Wiltshire, Karen H., Steinke, Nicola, Vidal-Melgosa, Silvia, Hehemann, Jan-Hendrik, Huettel, Bruno, Schweder, Thomas, Fuchs, Bernhard M., Amann, Rudolf I., Teeling, Hanno

Source: Microbiome; 4/17/2023, Vol. 11 Issue 1, p1-18, 18p

Subject Terms: BACTERIOPLANKTON, GLYCANS, ALGAL blooms, MICROBIAL polysaccharides, SPRING, POLYSACCHARIDES, BETA-glucans

Glycoside hydrolase from the GH76 family indicates that marine Salegentibacter sp. Hel6 consumes alpha-mannan from fungi.

Authors: Solanki, Vipul, Krüger, Karen, Crawford, Conor J., Pardo-Vargas, Alonso, Danglad-Flores, José, Hoang, Kim Le Mai, Klassen, Leeann, Abbott, D. Wade, Seeberger, Peter H., Amann, Rudolf I., Teeling, Hanno, Hehemann, Jan-Hendrik

Source: ISME Journal: Multidisciplinary Journal of Microbial Ecology; Jul2022, Vol. 16 Issue 7, p1818-1830, 13p

Symbiosis insights through metagenomic analysis of a microbial consortium.

Authors: Woyke, Tanja, Teeling, Hanno, Ivanova, Natalia N.

Source: Nature; October 26 2006, Vol. 443, p950-955, 6p

North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches.

Authors: Francis, Ben, Urich, Tim, Mikolasch, Annett, Teeling, Hanno, Amann, Rudolf

Source: Environmental Microbiome; 8/17/2021, Vol. 16 Issue 1, p1-16, 16p

Subject Terms: GAMMAPROTEOBACTERIA, SPRING, ALGAL blooms, POLYSACCHARIDES, ORGANIC compounds, ECOLOGICAL niche, POPULATION dynamics, RICE blast disease

Changing expression patterns of TonB-dependent transporters suggest shifts in polysaccharide consumption over the course of a spring phytoplankton bloom.

Authors: Francis, T. Ben, Bartosik, Daniel, Sura, Thomas, Sichert, Andreas, Hehemann, Jan-Hendrik, Markert, Stephanie, Schweder, Thomas, Fuchs, Bernhard M., Teeling, Hanno, Amann, Rudolf I., Becher, Dörte

Source: ISME Journal: Multidisciplinary Journal of Microbial Ecology; Aug2021, Vol. 15 Issue 8, p2336-2350, 15p