Thousands of small, novel genes predicted in global phage genomes

Authors: Sengupta, Aditi, Sczyrba, Alexander, Maria da Silva, Aline, Buchan, Alison, Gaudin, Amelie, Brune, Andreas, Hirsch, Ann M., Neumann, Anthony, Shade, Ashley, Visel, Axel, Campbell, Barbara, Baker, Brett, Hedlund, Brian P., Crump, Byron C., Currie, Cameron, Kelly, Charlene, Craft, Chris, Hazard, Christina, Francis, Christopher, Schadt, Christopher W., Averill, Colin, Mobilian, Courtney, Buckley, Dan, Hunt, Dana, Noguera, Daniel, Beck, David, Valentine, David L., Walsh, David, Sumner, Dawn, Lymperopoulou, Despoina, Bhaya, Devaki, Bryant, Donald A., Morrison, Elise, Brodie, Eoin, Young, Erica, Lilleskov, Erik, Högfors-Rönnholm, Eva, Chen, Feng, Stewart, Frank, Nicol, Graeme W., Teeling, Hanno, Beller, Harry R., Dionisi, Hebe, Liao, Hui-Ling, Beman, J. Michael, Stegen, James, Tiedje, James, Jansson, Janet, VanderGheynst, Jean, Norton, Jeanette, Dangl, Jeff, Blanchard, Jeffrey, Bowen, Jennifer, Macalady, Jennifer, Pett-Ridge, Jennifer, Rich, Jeremy, Payet, Jérôme P., Gladden, John D., Raff, Jonathan D., Klassen, Jonathan L., Tarn, Jonathan, Neufeld, Josh, Gravuer, Kelly, Hofmockel, Kirsten, Chen, Ko-Hsuan, Konstantinidis, Konstantinos, DeAngelis, Kristen M., Partida-Martinez, Laila P., Meredith, Laura, Chistoserdova, Ludmila, Moran, Mary Ann, Scarborough, Matthew, Schrenk, Matthew, Sullivan, Matthew, David, Maude, O'Malley, Michelle A., Medina, Monica, Habteselassie, Mussie, Ward, Nicholas D., Pietrasiak, Nicole, Mason, Olivia U., Sorensen, Patrick O., Estrada de los Santos, Paulina, Baldrian, Petr, McKay, R. Michael, Simister, Rachel, Stepanauskas, Ramunas, Neumann, Rebecca, Malmstrom, Rex, Cavicchioli, Ricardo, Kelly, Robert, Hatzenpichler, Roland, Stocker, Roman, Cattolico, Rose Ann, Ziels, Ryan, Vilgalys, Rytas, Blumer-Schuette, Sara, Crowe, Sean, Roux, Simon, Hallam, Steven, Lindow, Steven, Brawley, Susan H., Tringe, Susannah, Woyke, Tanja, Whitman, Thea, Bianchi, Thomas, Mock, Thomas, Donohue, Timothy, James, Timothy Y., Kalluri, Udaya C., Karaoz, Ulas, Denef, Vincent, Liu, Wen-Tso, Whitman, William, Ouyang, Yang, Fremin, Brayon J., Bhatt, Ami S., Kyrpides, Nikos C.

Source: In Cell Reports 21 June 2022 39(12)

Marine anoxia initiates giant sulfur-oxidizing bacterial mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland.

Authors: Yousavich, David J., Robinson, De'Marcus, Peng, Xuefeng, Krause, Sebastian J. E., Wenzhöfer, Frank, Janssen, Felix, Liu, Na, Tarn, Jonathan, Kinnaman, Franklin, Valentine, David L., Treude, Tina

Source: Biogeosciences; 2024, Vol. 21 Issue 3, p789-809, 21p

Subject Terms: ANOXIC waters, SEDIMENT-water interfaces, BORDERLANDS, SULFUR, DENITRIFYING bacteria, NITROGEN in soils, IRON

Autonomous Marine Robotic Technology Reveals an Expansive Benthic Bacterial Community Relevant to Regional Nitrogen Biogeochemistry

Authors: Valentine, David L., Fisher, G. Burch, Pizarro, Oscar, Kaiser, Carl L., Yoerger, Dana, Breier, John A., Tarn, Jonathan

Source: Environmental science & technology. 50(20):11057-11065

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN608595439&indx=1&recIds=ETOCRN608595439

Methylated cycloalkanes fuel a novel genus in the Porticoccaceae family (Ca. Reddybacter gen. nov).

Authors: Arrington, Eleanor C.¹ (AUTHOR) earrington@ucsb.edu, Tarn, Jonathan² (AUTHOR), Kittner, Hailie E.² (AUTHOR), Kivenson, Veronika³ (AUTHOR), Liu, Rachel M.⁴ (AUTHOR), Valentine, David L.^1,5 (AUTHOR) valentine@geol.ucsb.edu

Source: Environmental Microbiology. Dec2023, Vol. 25 Issue 12, p2958-2971. 14p.

Subject Terms: *CYCLOALKANES, *OIL seepage, *PETROLEUM reservoirs, *HYDROPHOBIC compounds, *MICROBIAL metabolism, *OIL spills

Geographic Terms: GULF of Mexico

Use of a Human Influenza Challenge Model to Assess Person-to-Person Transmission: Proof-of-Concept Study

Authors: Killingley, Ben, Enstone, Joanne E., Greatorex, Jane, Gilbert, Anthony S., Lambkin-Williams, Rob, Cauchemez, Simon, Katz, Jacqueline M., Booy, Robert, Hayward, Andrew, Oxford, John, Bridges, Carolyn B., Ferguson, Neil M., Van-Tarn, Jonathan S. Nguyen

Source: The Journal of Infectious Diseases, 2012 Jan 01. 205(1), 35-43.

Access URL: http://dx.doi.org/10.1093/infdis/jir701

Marine anoxia initiates giant sulfur-bacteria mat proliferation and associated changes in benthic nitrogen, sulfur, and iron cycling in the Santa Barbara Basin, California Borderland.

Authors: Yousavich, David J.¹, yousavdj@ucla.edu, Robinson, De'Marcus², demarcus1.robinson@atmos.ucla.edu, Peng, Xuefeng³, xpeng@seoe.sc.edu, Krause, Sebastian J. E.^1,4, sjkrause@g.ucla.edu, Wenzhoefer, Frank^5,6,7, frank.wenzhoefer@awi.de, Janßen, Felix^5,6, felix.janssen@awi.de, Liu, Na⁸, nliu@ucsb.edu, Tarn, Jonathan⁸, tarn@ucsb.edu, Kinnaman, Frank⁸, frank_kinnaman@ucsb.edu, Valentine, David L.⁸, valentine@ucsb.edu, Treude, Tina^1,2, ttreude@g.ucla.edu

Source: EGUsphere; 6/19/2023, p1-48, 48p

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Thousands of small, novel genes predicted in global phage genomes

Authors: Fremin, Brayon J., Bhatt, Ami S., Kyrpides, Nikos C., Sengupta, Aditi, Sczyrba, Alexander, Maria da Silva, Aline, Buchan, Alison, Gaudin, Amelie, Brune, Andreas, Hirsch, Ann M., Neumann, Anthony, Shade, Ashley, Visel, Axel, Campbell, Barbara, Baker, Brett, Hedlund, Brian P., Crump, Byron C., Currie, Cameron, Kelly, Charlene, Craft, Chris, Hazard, Christina, Francis, Christopher, Schadt, Christopher W., Averill, Colin, Mobilian, Courtney, Buckley, Dan, Hunt, Dana, Noguera, Daniel, Beck, David, Valentine, David L., Walsh, David, Sumner, Dawn, Lymperopoulou, Despoina, Bhaya, Devaki, Bryant, Donald A., Morrison, Elise, Brodie, Eoin, Young, Erica, Lilleskov, Erik, Högfors-Rönnholm, Eva, Chen, Feng, Stewart, Frank, Nicol, Graeme W., Teeling, Hanno, Beller, Harry R., Dionisi, Hebe, Liao, Hui-Ling, Beman, J. Michael, Stegen, James, Tiedje, James, Jansson, Janet, VanderGheynst, Jean, Norton, Jeanette, Dangl, Jeff, Blanchard, Jeffrey, Bowen, Jennifer, Macalady, Jennifer, Pett-Ridge, Jennifer, Rich, Jeremy, Payet, Jérôme P., Gladden, John D., Raff, Jonathan D., Klassen, Jonathan L., Tarn, Jonathan, Neufeld, Josh, Gravuer, Kelly, Hofmockel, Kirsten, Chen, Ko-Hsuan, Konstantinidis, Konstantinos, DeAngelis, Kristen M., Partida-Martinez, Laila P., Meredith, Laura, Chistoserdova, Ludmila, Moran, Mary Ann, Scarborough, Matthew, Schrenk, Matthew, Sullivan, Matthew, David, Maude, O'Malley, Michelle A., Medina, Monica, Habteselassie, Mussie, Ward, Nicholas D., Pietrasiak, Nicole, Mason, Olivia U., Sorensen, Patrick O., Estrada de los Santos, Paulina, Baldrian, Petr, McKay, R. Michael, Simister, Rachel, Stepanauskas, Ramunas, Neumann, Rebecca, Malmstrom, Rex, Cavicchioli, Ricardo, Kelly, Robert, Hatzenpichler, Roland, Stocker, Roman, Cattolico, Rose Ann, Ziels, Ryan, Vilgalys, Rytas, Blumer-Schuette, Sara, Crowe, Sean, Roux, Simon, Hallam, Steven, Lindow, Steven, Brawley, Susan H., Tringe, Susannah, Woyke, Tanja, Whitman, Thea, Bianchi, Thomas, Mock, Thomas, Donohue, Timothy, James, Timothy Y., Kalluri, Udaya C., Karaoz, Ulas, Denef, Vincent, Liu, Wen-Tso, Whitman, William, Ouyang, Yang

Source: Cell Reports; June 2022, Vol. 39 Issue: 12