Moving beyond multi-triazole to multi-fungicide resistance: Broader selection of drug resistance in the human fungal pathogen Aspergillus fumigatus.

Authors: Kanellopoulos, Spyros G.¹ (AUTHOR), Snelders, Eveline¹ (AUTHOR) eveline.snelders@wur.nl

Source: PLoS Pathogens. 2/10/2025, Vol. 21 Issue 2, p1-6. 6p.

Subject Terms: *FUNGICIDE resistance, *TANDEM repeats, *ASPERGILLOSIS, *WHOLE genome sequencing, *AGRICULTURE, *DIHYDROOROTATE dehydrogenase, *ANTIFUNGAL agents

Insights into the Lignocellulose-Degrading Enzyme System Based on the Genome Sequence of Flavodon sp. x-10.

Authors: Wang, Bao-Teng¹ (AUTHOR) wbt@njfu.edu.cn, Hu, Shuang¹ (AUTHOR) shuanghu@njfu.edu.cn, Oh, Dong Nyoung² (AUTHOR) ody3784@pukyong.ac.kr, Jin, Chun-Zhi³ (AUTHOR) chunsik@kribb.re.kr, Jin, Long¹ (AUTHOR) isacckim@alumni.kaist.ac.kr, Lee, Jong Min² (AUTHOR) jmlee84@pknu.ac.kr, Jin, Feng-Jie¹ (AUTHOR) jmlee84@pknu.ac.kr

Source: International Journal of Molecular Sciences. Feb2025, Vol. 26 Issue 3, p866. 22p.

Subject Terms: *WHOLE genome sequencing, *TANDEM repeats, *NEUROSPORA crassa, *CATABOLITE repression, *AMINO acid transport, *LIGNOCELLULOSE, *CELLULASE

Krait2: a versatile software for microsatellite investigation, visualization and marker development.

Authors: Du, Lianming¹ (AUTHOR) dulianming@cdu.edu.cn, Chen, Jiahao¹ (AUTHOR), Sun, Dalin¹ (AUTHOR), Zhao, Kelei¹ (AUTHOR), Zeng, Qianglin¹ (AUTHOR), Yang, Nan² (AUTHOR) yangnan0204@126.com

Source: BMC Genomics. 1/26/2025, Vol. 26 Issue 1, p1-7. 7p.

Subject Terms: *TANDEM repeats, *GENETIC regulation, *LIFE sciences, *SOURCE code, *MICROSATELLITE repeats

Assembly and comparative analysis of the complete mitochondrial genome of red raspberry (Rubus idaeus L.) revealing repeat-mediated recombination and gene transfer.

Authors: Zhang, Huajie^1,2,3 (AUTHOR), Yan, Minghui⁴ (AUTHOR), Li, Lijuan^1,2,3 (AUTHOR), Jiang, Zhuo^1,2,3 (AUTHOR), Xiong, Ye^1,2,3 (AUTHOR), Wang, Yusheng⁵ (AUTHOR), Akogwu, Caleb Onoja^1,2,3 (AUTHOR), Tolulope, Olutayo Mary^1,2,3 (AUTHOR), Zhou, Hao⁶ (AUTHOR), Sun, Yanxia^1,2,3 (AUTHOR), Wang, Hengchang^1,2,3 (AUTHOR) hcwang@wbgcas.cn

Source: BMC Plant Biology. 1/22/2025, p1-12. 12p.

Subject Terms: *TANDEM repeats, *MITOCHONDRIAL DNA, *HOMOLOGOUS recombination, *CHLOROPLAST DNA, *LIFE sciences

On the ability to extract MLVA profiles of Vibrio cholerae isolates from WGS data generated with Oxford Nanopore Technologies.

Authors: Ambroise, Jérôme¹ (AUTHOR) jerome.ambroise@uclouvain.be, Bearzatto, Bertrand¹ (AUTHOR) bertrand.bearzatto@uclouvain.be, Durant, Jean-Francois¹ (AUTHOR) jean-francois.durant@uclouvain.be, Irenge, Leonid M.¹ (AUTHOR) leonid.irenge@uclouvain.be, Gala, Jean-Luc¹ (AUTHOR) Jean-luc.gala@uclouvain.be

Source: BMC Research Notes. 1/16/2025, Vol. 18 Issue 1, p1-5. 5p.

Subject Terms: *WHOLE genome sequencing, *TANDEM repeats, *FOODBORNE diseases, *VIBRIO cholerae, *WATERBORNE infection

Order in Chaos: Lesser-Conserved and Repeat Structures in Dehydrins.

Authors: Strimbeck, G. Richard¹ (AUTHOR) richard.strimbeck@ntnu.no

Source: Biomolecules (2218-273X). Jan2025, Vol. 15 Issue 1, p137. 20p.

Subject Terms: *PLANT proteins, *TANDEM repeats, *DEHYDRINS, *EMBRYOLOGY, *PROTEINS

NASTRA: accurate analysis of short tandem repeat markers by nanopore sequencing with repeat-structure-aware algorithm.

Authors: Ren, Zilin^1,2 (AUTHOR) zilin.ren@outlook.com, Zhang, Jiarong³ (AUTHOR), Zhang, Yixiang^1,2 (AUTHOR), Yang, Tingting³ (AUTHOR), Sun, Pingping² (AUTHOR), Xue, Jiguo⁴ (AUTHOR), Bo, Xiaochen⁴ (AUTHOR), Zhou, Bo¹ (AUTHOR) zilin.ren@outlook.com, Yan, Jiangwei³ (AUTHOR) zilin.ren@outlook.com, Ni, Ming⁴ (AUTHOR) zilin.ren@outlook.com

Source: Briefings in Bioinformatics. Nov2024, Vol. 25 Issue 6, p1-12. 12p.

Subject Terms: Tandem repeats, Paternity testing, Genetic markers, Cell lines, Cell analysis, Short tandem repeat analysis

Comparison of the chloroplast genomics of nine endangered Habenaria species and phylogenetic analysis.

Authors: Zhang, Jinkui^1,2 (AUTHOR), Zhou, Dangwei^2,3,4 (AUTHOR) dangweizhou@sina.com, Chen, Weidong¹ (AUTHOR), Lin, Pengcheng² (AUTHOR), Zhao, Suqin⁵ (AUTHOR), Wang, Min² (AUTHOR), Wang, Huan³ (AUTHOR), Shi, Shengbo³ (AUTHOR), mehmood, Furrukh⁶ (AUTHOR), Ye, Xing² (AUTHOR), Meng, Jing² (AUTHOR), Zhuang, Wenyuan² (AUTHOR)

Source: BMC Plant Biology. 11/5/2024, Vol. 24 Issue 1, p1-15. 15p.

Subject Terms: *NEOGENE Period, *TANDEM repeats, *CHLOROPLAST DNA, *ENDANGERED species, *PHYLOGENY

Pan-Chloroplast Genomes Reveal the Accession-Specific Marker for Gastrodia elata f. glauca.

Authors: Li, Jiaxue¹ (AUTHOR) 17749967508@163.com, Pan, Daichuan¹ (AUTHOR), Wang, Junfei¹ (AUTHOR), Zeng, Xu¹ (AUTHOR) xzeng@implad.ac.cn, Guo, Shunxing¹ (AUTHOR) xzeng@implad.ac.cn

Source: International Journal of Molecular Sciences. Nov2024, Vol. 25 Issue 21, p11603. 12p.

Subject Terms: *MICROSATELLITE repeats, *TANDEM repeats, *GENETIC variation, *PRODUCT differentiation, *MARKET prices, *CHLOROPLAST DNA

Ectopic enhancer–enhancer interactions as causal forces driving RNA‐directed DNA methylation in gene regulatory regions.

Authors: Yang, Yazhou¹ (AUTHOR), Liu, Jia² (AUTHOR), Singer, Stacy D.³ (AUTHOR), Yan, Guohua⁴ (AUTHOR), Bennet, Dennis R.⁵ (AUTHOR), Liu, Yue⁶ (AUTHOR), Hily, Jean‐Michel⁷ (AUTHOR), Xu, Weirong⁸ (AUTHOR), Yang, Yingzhen⁹ (AUTHOR), Wang, Xiping¹ (AUTHOR), Zhong, Gan‐Yuan⁹ (AUTHOR), Liu, Zhongchi¹⁰ (AUTHOR), Charles An, Yong‐Qiang¹¹ (AUTHOR), Liu, Huawei¹² (AUTHOR), Liu, Zongrang⁵ (AUTHOR) zongrang.liu@usda.gov

Source: Plant Biotechnology Journal. Nov2024, Vol. 22 Issue 11, p3121-3134. 14p.

Subject Terms: *SMALL interfering RNA, *TANDEM repeats, *REGULATOR genes, *DNA methylation, *GENETIC transcription, *GENE enhancers, *TRANSPOSONS

Molecular Typing of Pseudomonas aeruginosa Isolates Collected in Abidjan Hospitals (Côte d'Ivoire) Using the Multiple-Locus Variable Number of Tandem Repeats Method.

Authors: Essoh, Christiane¹ (AUTHOR) daouda-toure@upgc.edu.ci, Hauck, Yolande² (AUTHOR) yolande.hauck@i2bc.paris-saclay.fr, Ouassa, Timothée³ (AUTHOR) timoth2@yahoo.com, Touré, Daouda¹ (AUTHOR), Djatchi, Richmond³ (AUTHOR) djatchirichmond@yahoo.fr, Loukou, Guillaume Yao⁴ (AUTHOR) guillaumeloukou@yahoo.fr, N'Guetta, Simon-Pierre Assanvo⁵ (AUTHOR) nguettaewatty@yahoo.fr, Vergnaud, Gilles² (AUTHOR) christine.pourcel@i2bc.paris-saclay.fr, Pourcel, Christine² (AUTHOR)

Source: Diagnostics (2075-4418). Oct2024, Vol. 14 Issue 20, p2284. 11p.

Subject Terms: *GENETIC variation, *TANDEM repeats, *PATHOLOGICAL laboratories, *RESOURCE-limited settings, *WHOLE genome sequencing

Geographic Terms: COTE d'Ivoire

The 9 bp Deletion between the Mitochondrial COII and Lysine tRNA Genes in a Caucasian Population with Cognitive Disorders: An Observational Study.

Authors: Giuliano, Marika¹ (AUTHOR) mgiuliano@oasi.en.it, Santa Paola, Sandro¹ (AUTHOR) eborgione@oasi.en.it, Borgione, Eugenia¹ (AUTHOR) mlogiudice@oasi.en.it, Lo Giudice, Mariangela¹ (AUTHOR) fdiblasi@oasi.en.it, Di Blasi, Francesco Domenico¹ (AUTHOR) rpettinato@oasi.en.it, Pettinato, Rosa¹ (AUTHOR) cromano@oasi.en.it, Romano, Corrado^1,2 (AUTHOR) cscuderi@oasi.en.it, Scuderi, Carmela¹ (AUTHOR)

Source: International Journal of Molecular Sciences. Oct2024, Vol. 25 Issue 19, p10826. 8p.

Subject Terms: *MITOCHONDRIAL DNA abnormalities, *TANDEM repeats, *SUB-Saharan Africans, *GENETIC polymorphisms, *POLYMORPHISM (Zoology), *TRANSFER RNA

Generation and Characterization of hiPS Lines from Three Patients Affected by Different Forms of HPDL -Related Neurological Disorders.

Authors: Baggiani, Matteo¹ (AUTHOR) matteo.baggiani@fsm.unipi.it, Damiani, Devid¹ (AUTHOR) devid.damiani@fsm.unipi.it, Privitera, Flavia¹ (AUTHOR) stefania.dellavecchia@fsm.unipi.it, Della Vecchia, Stefania^1,2 (AUTHOR) alessandra.tessa@fsm.unipi.it, Tessa, Alessandra¹ (AUTHOR), Santorelli, Filippo Maria¹ (AUTHOR) devid.damiani@fsm.unipi.it

Source: International Journal of Molecular Sciences. Oct2024, Vol. 25 Issue 19, p10614. 13p.

Subject Terms: *SHORT tandem repeat analysis, *TANDEM repeats, *UBIQUINONES, *JUVENILE diseases, *PYRAMIDAL tract

Investigation of the relationship between ACAN gene VNTR polymorphism and Alzheimer's disease in Turkish population.

Authors: Keskin, Tugba¹ (AUTHOR), Avsar, Orcun¹ (AUTHOR) orcunavsar@hitit.edu.tr, Eliacik, Sinan² (AUTHOR), Uysal Tan, Funda² (AUTHOR)

Source: Nucleosides, Nucleotides & Nucleic Acids. 2024, Vol. 43 Issue 10, p1129-1138. 10p.

Subject Terms: *ALZHEIMER'S disease, *TANDEM repeats, *TURKS, *DNA, *GENETIC polymorphisms

Unidirectional recruitment between MeCP2 and KSHV-encoded LANA revealed by CRISPR/Cas9 recruitment assay.

Authors: Lavi, Ido¹, Bhattacharya, Supriya¹, Awase, Ankita¹, Orgil, Ola¹, Avital, Nir¹, Journo, Guy¹, Gurevich, Vyacheslav¹, Shamay, Meir¹, meir.shamay@biu.ac.il

Source: PLoS Pathogens; 3/10/2025, Vol. 21 Issue 3, p1-21, 21p

Whole Mitochondrial Genome Sequencing Analysis of Canine Testicular Tumours.

Authors: Tkaczyk-Wlizło, Angelika¹ (AUTHOR) angelika.tkaczyk@up.lublin.pl, Kowal, Krzysztof¹ (AUTHOR) krzysztof.kowal@up.lublin.pl, Śmiech, Anna² (AUTHOR) anna.smiech@up.lublin.pl, Ślaska, Brygida¹ (AUTHOR) brygida.slaska@up.lublin.pl

Source: International Journal of Molecular Sciences. Sep2024, Vol. 25 Issue 18, p9944. 12p.

Subject Terms: *WHOLE genome sequencing, *TANDEM repeats, *TESTIS tumors, *BENIGN tumors, *GENETIC variation

Transcriptome-wide Identification of Nine Tandem Repeat Protein Families in Roselle (Hibiscus sabdariffa L.).

Authors: Seok Yien Yong, Christina¹ chrisyong@upm.edu.my, Nur Atheeqah-Hamzah¹

Source: Tropical Life Sciences Research. 2024, Vol. 35 Issue 3, p121-148. 28p.

Subject Terms: *TANDEM repeats, *ELONGATION factors (Biochemistry), *GENE families, *AMINO acid residues, *ROSELLE

The Comparative Full-Length Genome Characterization of African Swine Fever Virus Detected in Thailand.

Authors: Salman, Muhammad¹ (AUTHOR), Venkateswaran, Dhithya¹ (AUTHOR), Prakash, Anwesha¹ (AUTHOR), Nguyen, Quynh Anh¹ (AUTHOR), Suntisukwattana, Roypim¹ (AUTHOR), Atthaapa, Waranya¹ (AUTHOR), Tantituvanont, Angkana² (AUTHOR), Songkasupa, Tapanut³ (AUTHOR), Deemagarn, Taweewat³ (AUTHOR), Bhakha, Kultyarat³ (AUTHOR), Pengpetch, Nuttun³ (AUTHOR), Saenboonrueng, Janya⁴ (AUTHOR), Thaweerattanasinp, Theeradej⁴ (AUTHOR), Jongkaewwattana, Anan⁴ (AUTHOR), Nilubol, Dachrit¹ (AUTHOR) dachrit@gmail.com

Source: Animals (2076-2615). Sep2024, Vol. 14 Issue 17, p2602. 21p.

Subject Terms: *AFRICAN swine fever virus, *TANDEM repeats, *GENETIC variation, *VIRAL DNA, *AFRICAN swine fever, *WILD boar, *SWINE farms

Effective use of skin microbiome signatures for fingerprint identification.

Authors: Yılmaz, Seda Salman^1,2 (AUTHOR), Kuşkucu, Mert Ahmet³ (AUTHOR), Çakan, Hüseyin⁴ (AUTHOR), Aygün, Gökhan^2,5 (AUTHOR) gokhanaygun67@yahoo.com

Source: Skin Research & Technology. Sep2024, Vol. 30 Issue 9, p1-7. 7p.

Subject Terms: *HUMAN fingerprints, *TANDEM repeats, *FORENSIC sciences, *HUMAN microbiota, *CRIMINAL investigation

Organellar Genomes of Sargassum hemiphyllum var. chinense Provide Insight into the Characteristics of Phaeophyceae.

Authors: Jia, Xuli¹ (AUTHOR) 18734539035@163.com, Chen, Weizhou² (AUTHOR) wzchen@stu.edu.cn, Liu, Tao³ (AUTHOR) liutao2021@xmu.edu.cn, Chen, Zepan² (AUTHOR) zepan@stu.edu.cn

Source: International Journal of Molecular Sciences. Aug2024, Vol. 25 Issue 16, p8584. 25p.

Subject Terms: *TANDEM repeats, *COMPARATIVE genomics, *CHLOROPLAST DNA, *SARGASSUM, *MITOCHONDRIAL DNA