Bispecific dendritic-T cell engager potentiates anti-tumor immunity

Authors: Shapir Itai, Yuval, Barboy, Oren, Salomon, Ran, Bercovich, Akhiad, Xie, Ken, Winter, Eitan, Shami, Tamar, Porat, Ziv, Erez, Neta, Tanay, Amos, Amit, Ido, Dahan, Rony

Source: In Cell 18 January 2024 187(2):375-389

Single-cell multi-omics defines the cell-type-specific impact of splicing aberrations in human hematopoietic clonal outgrowths

Authors: Cortés-López, Mariela, Chamely, Paulina, Hawkins, Allegra G., Stanley, Robert F., Swett, Ariel D., Ganesan, Saravanan, Mouhieddine, Tarek H., Dai, Xiaoguang, Kluegel, Lloyd, Chen, Celine, Batta, Kiran, Furer, Nili, Vedula, Rahul S., Beaulaurier, John, Drong, Alexander W., Hickey, Scott, Dusaj, Neville, Mullokandov, Gavriel, Stasiw, Adam M., Su, Jiayu, Chaligné, Ronan, Juul, Sissel, Harrington, Eoghan, Knowles, David A., Potenski, Catherine J., Wiseman, Daniel H., Tanay, Amos, Shlush, Liran, Lindsley, Robert C., Ghobrial, Irene M., Taylor, Justin, Abdel-Wahab, Omar, Gaiti, Federico, Landau, Dan A.

Source: In Cell Stem Cell 7 September 2023 30(9):1262-1281

Time-aligned hourglass gastrulation models in rabbit and mouse

Authors: Mayshar, Yoav, Raz, Ofir, Cheng, Saifeng, Ben-Yair, Raz, Hadas, Ron, Reines, Netta, Mittnenzweig, Markus, Ben-Kiki, Oren, Lifshitz, Aviezer, Tanay, Amos, Stelzer, Yonatan

Source: In Cell 8 June 2023 186(12):2610-2627

The intrinsic and extrinsic effects of TET proteins during gastrulation

Authors: Cheng, Saifeng, Mittnenzweig, Markus, Mayshar, Yoav, Lifshitz, Aviezer, Dunjić, Marko, Rais, Yoach, Ben-Yair, Raz, Gehrs, Stephanie, Chomsky, Elad, Mukamel, Zohar, Rubinstein, Hernan, Schlereth, Katharina, Reines, Netta, Orenbuch, Ayelet-Hashahar, Tanay, Amos, Stelzer, Yonatan

Source: In Cell 18 August 2022 185(17):3169-3185

Hormone seasonality in medical records suggests circannual endocrine circuits

Authors: Tendler, Avichai, Bar, Alon, Mendelsohn-Cohen, Netta, Karin, Omer, Kohanim, Yael Korem, Maimon, Lior, Milo, Tomer, Raz, Moriya, Mayo, Avi, Tanay, Amos, Alon, Uri

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Feb . 118(7), 1-8.

Access URL: https://www.jstor.org/stable/27027353

Evolutionary cell type mapping with single-cell genomics

Authors: Tanay, Amos, Sebé-Pedrós, Arnau

Source: In Trends in Genetics October 2021 37(10):919-932

A stony coral cell atlas illuminates the molecular and cellular basis of coral symbiosis, calcification, and immunity

Authors: Levy, Shani, Elek, Anamaria, Grau-Bové, Xavier, Menéndez-Bravo, Simón, Iglesias, Marta, Tanay, Amos, Mass, Tali, Sebé-Pedrós, Arnau

Source: In Cell 27 May 2021 184(11):2973-2987

A single-embryo, single-cell time-resolved model for mouse gastrulation

Authors: Mittnenzweig, Markus, Mayshar, Yoav, Cheng, Saifeng, Ben-Yair, Raz, Hadas, Ron, Rais, Yoach, Chomsky, Elad, Reines, Netta, Uzonyi, Anna, Lumerman, Lior, Lifshitz, Aviezer, Mukamel, Zohar, Orenbuch, Ayelet-Hashahar, Tanay, Amos, Stelzer, Yonatan

Source: In Cell 27 May 2021 184(11):2825-2842

Temporal BMP4 effects on mouse embryonic and extraembryonic development.

Authors: Hadas, Ron, Rubinstein, Hernan, Mittnenzweig, Markus, Mayshar, Yoav, Ben-Yair, Raz, Cheng, Saifeng, Aguilera-Castrejon, Alejandro, Reines, Netta, Orenbuch, Ayelet-Hashahar, Lifshitz, Aviezer, Chen, Dong-Yuan, Elowitz, Michael B., Zernicka-Goetz, Magdalena, Hanna, Jacob H., Tanay, Amos, Stelzer, Yonatan

Source: Nature; Oct2024, Vol. 634 Issue 8034, p652-661, 10p

The EXPANDER Integrated Platform for Transcriptome Analysis

Authors: Hait, Tom Aharon, Maron-Katz, Adi, Sagir, Dorit, Amar, David, Ulitsky, Igor, Linhart, Chaim, Tanay, Amos, Sharan, Roded, Shiloh, Yosef, Elkon, Ran, Shamir, Ron

Source: In Journal of Molecular Biology 14 June 2019 431(13):2398-2406

Deterministic Somatic Cell Reprogramming Involves Continuous Transcriptional Changes Governed by Myc and Epigenetic-Driven Modules

Authors: Zviran, Asaf, Mor, Nofar, Rais, Yoach, Gingold, Hila, Peles, Shani, Chomsky, Elad, Viukov, Sergey, Buenrostro, Jason D., Scognamiglio, Roberta, Weinberger, Leehee, Manor, Yair S., Krupalnik, Vladislav, Zerbib, Mirie, Hezroni, Hadas, Jaitin, Diego Adhemar, Larastiaso, David, Gilad, Shlomit, Benjamin, Sima, Gafni, Ohad, Mousa, Awni, Ayyash, Muneef, Sheban, Daoud, Bayerl, Jonathan, Aguilera-Castrejon, Alejandro, Massarwa, Rada, Maza, Itay, Hanna, Suhair, Stelzer, Yonatan, Ulitsky, Igor, Greenleaf, William J., Tanay, Amos, Trumpp, Andreas, Amit, Ido, Pilpel, Yitzhak, Novershtern, Noa, Hanna, Jacob H.

Source: In Cell Stem Cell 7 February 2019 24(2):328-341

Dysfunctional CD8 T Cells Form a Proliferative, Dynamically Regulated Compartment within Human Melanoma

Authors: Li, Hanjie, van der Leun, Anne M., Yofe, Ido, Lubling, Yaniv, Gelbard-Solodkin, Dikla, van Akkooi, Alexander C.J., van den Braber, Marlous, Rozeman, Elisa A., Haanen, John B.A.G., Blank, Christian U., Horlings, Hugo M., David, Eyal, Baran, Yael, Bercovich, Akhiad, Lifshitz, Aviezer, Schumacher, Ton N., Tanay, Amos, Amit, Ido

Source: In Cell 7 February 2019 176(4):775-789

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq

Authors: Sebé-Pedrós, Arnau, Saudemont, Baptiste, Chomsky, Elad, Plessier, Flora, Mailhé, Marie-Pierre, Renno, Justine, Loe-Mie, Yann, Lifshitz, Aviezer, Mukamel, Zohar, Schmutz, Sandrine, Novault, Sophie, Steinmetz, Patrick R.H., Spitz, François, Tanay, Amos, Marlow, Heather

Source: In Cell 31 May 2018 173(6):1520-1534

Conservation and Evolvability in Regulatory Networks: The Evolution of Ribosomal Regulation in Yeast

Authors: Tanay, Amos, Regev, Aviv, Shamir, Ron, Lander, Eric S.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2005 May . 102(20), 7203-7208.

Access URL: https://www.jstor.org/stable/3375509

MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing

Authors: Keren-Shaul, Hadas, Kenigsberg, Ephraim, Jaitin, Diego, David, Eyal, Paul, Franziska, Tanay, Amos, Amit, Ido

Source: Nature protocols. 14(6):1841-1862

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100153461860.0x000001&indx=1&recIds=ETOCvdc_100153461860.0x000001

Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genomewide Data

Authors: Tanay, Amos, Sharan, Roded, Kupiec, Martin, Shamir, Ron, Karp, Richard M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2004 Mar 01. 101(9), 2981-2986.

Access URL: https://www.jstor.org/stable/3371142

Suppressors and activators of JAK-STAT signaling at diagnosis and relapse of acute lymphoblastic leukemia in Down syndrome

Authors: Schwartzman, Omer, Savino, Angela Maria, Gombert, Michael, Palmi, Chiara, Cario, Gunnar, Schrappe, Martin, Eckert, Cornelia, von Stackelberg, Arend, Huang, Jin-Yan, Hameiri-Grossman, Michal, Avigad, Smadar, te Kronnie, Geertruy, Geron, Ifat, Birger, Yehudit, Rein, Avigail, Zarfati, Giulia, Fischer, Ute, Mukamel, Zohar, Stanulla, Martin, Biondi, Andrea, Cazzaniga, Giovanni, Vetere, Amedeo, Wagner, Bridget K., Chen, Zhu, Chen, Sai-Juan, Tanay, Amos, Borkhardt, Arndt, Izraeli, Shai

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 May . 114(20), E4030-E4039.

Access URL: https://www.jstor.org/stable/26483261

Multiscale 3D Genome Rewiring during Mouse Neural Development

Authors: Bonev, Boyan, Mendelson Cohen, Netta, Szabo, Quentin, Fritsch, Lauriane, Papadopoulos, Giorgio L., Lubling, Yaniv, Xu, Xiaole, Lv, Xiaodan, Hugnot, Jean-Philippe, Tanay, Amos, Cavalli, Giacomo

Source: In Cell 19 October 2017 171(3):557-572

Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma

Authors: Ledergor, Guy, Weiner, Assaf, Zada, Mor, Wang, Shuang-Yin, Cohen, Yael C., Gatt, Moshe E., Snir, Nimrod, Magen, Hila, Koren-Michowitz, Maya, Herzog-Tzarfati, Katrin, Keren-Shaul, Hadas, Bornstein, Chamutal, Rotkopf, Ron, Yofe, Ido, David, Eyal, Yellapantula, Venkata, Kay, Sigalit, Salai, Moshe, Ben Yehuda, Dina, Nagler, Arnon, Shvidel, Lev, Orr-Urtreger, Avi, Halpern, Keren Bahar, Itzkovitz, Shalev, Landgren, Ola, San-Miguel, Jesus, Paiva, Bruno, Keats, Jonathan J., Papaemmanuil, Elli, Avivi, Irit, Barbash, Gabriel I., Tanay, Amos, Amit, Ido

Source: Nature medicine. 24(12):1867-1876

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193247007.0x000001&indx=1&recIds=ETOCvdc_100193247007.0x000001

Prediction of acute myeloid leukaemia risk in healthy individuals

Authors: Abelson, Sagi, Collord, Grace, Ng, Stanley, Weissbrod, Omer, Mendelson Cohen, Netta, Niemeyer, Elisabeth, Barda, Noam, Zuzarte, Philip, Heisler, Lawrence, Sundaravadanam, Yogi, Luben, Robert, Hayat, Shabina, Wang, Ting, Zhao, Zhen, Cirlan, Iulia, Pugh, Trevor, Soave, David, Ng, Karen, Latimer, Calli, Hardy, Claire, Raine, Keiran, Jones, David, Hoult, Diana, Britten, Abigail, McPherson, John, Johansson, Mattias, Mbabaali, Faridah, Eagles, Jenna, Miller, Jessica, Pasternack, Danielle, Timms, Lee, Krzyzanowski, Paul, Awadalla, Philip, Costa, Rui, Segal, Eran, Bratman, Scott, Beer, Philip, Behjati, Sam, Martincorena, Inigo, Wang, Jean, Bowles, Kristian, Quirós, J., Karakatsani, Anna, Vecchia, Carlo, Trichopoulou, Antonia, Salamanca-Fernández, Elena, Huerta, José, Barricarte, Aurelio, Travis, Ruth, Tumino, Rosario, Masala, Giovanna, Boeing, Heiner, Panico, Salvatore, Kaaks, Rudolf, Krämer, Alwin, Sieri, Sabina, Riboli, Elio, Vineis, Paolo, Foll, Matthieu, McKay, James, Polidoro, Silvia, Sala, Núria, Khaw, Kay-Tee, Vermeulen, Roel, Campbell, Peter, Papaemmanuil, Elli, Minden, Mark, Tanay, Amos, Balicer, Ran, Wareham, Nicholas, Gerstung, Moritz, Dick, John, Brennan, Paul, Vassiliou, George, Shlush, Liran

Source: Nature. 559(7714):400-404

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171356248.0x000001&indx=1&recIds=ETOCvdc_100171356248.0x000001