Pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution

Authors: Kafkas, Salih, Ma, Xiaokai, Zhang, Xingtan, Topçu, Hayat, Navajas-Pérez, Rafael, Wai, Ching Man, Tang, Haibao, Xu, Xuming, Khodaeiaminjan, Mortaza, Güney, Murat, Paizila, Aibibula, Karcı, Harun, Zhang, Xiaodan, Lin, Jing, Lin, Han, Herrán, Roberto de la, Rejón, Carmelo Ruiz, García-Zea, Jerson Alexander, Robles, Francisca, Muñoz, Coral del Val, Hotz-Wagenblatt, Agnes, Min, Xiangjia Jack, Özkan, Hakan, Motalebipour, Elmira Ziya, Gozel, Hatice, Çoban, Nergiz, Kafkas, Nesibe Ebru, Kilian, Andrej, Huang, HuaXing, Lv, Xuanrui, Liu, Kunpeng, Hu, Qilin, Jacygrad, Ewelina, Palmer, William, Michelmore, Richard, Ming, Ray

Source: In Plant Communications 8 May 2023 4(3)

Fatty acids composition in Pistachio

Authors: Gündüz Leyla Nurefşan, Kazan Murat, Topçu Hayat, Kafkas Salih

Source: BIO Web of Conferences, Vol 85, p 01008 (2024)

Subject Terms: Microbiology, QR1-502, Physiology, QP1-981, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.bio-conferences.org/articles/bioconf/pdf/2024/04/bioconf_i-craft2024_01008.pdf; https://doaj.org/toc/2117-4458

Access URL: https://doaj.org/article/05d5da23c3884d598c6482a1147fb639

A research on the detection of some phytochemical properties in the fruits of passiflora species

Authors: Ada Mesut, Oğuz İlbilge, Kafkas Nesibe Ebru, Burgut Ayşegül, Topçu Hayat

Source: BIO Web of Conferences, Vol 85, p 01050 (2024)

Subject Terms: Microbiology, QR1-502, Physiology, QP1-981, Zoology, QL1-991

File Description: electronic resource

Relation: https://www.bio-conferences.org/articles/bioconf/pdf/2024/04/bioconf_i-craft2024_01050.pdf; https://doaj.org/toc/2117-4458

Access URL: https://doaj.org/article/2ac852b5fabe4af79dc2b88766e86e2d

Development of a high-density genetic linkage map and identification of quantitative trait loci (QTLs) associated with Botrytis cinerea resistance in strawberry (Fragaria × ananassa Duch).

Authors: AYVAZ SÖNMEZ, Duygu, KARCI, Harun, TOPÇU, Hayat, BİLGİN, Ömer Faruk, GÜNAÇTI, Hale, TEVFİK, Habibullah, ÖZGÖREN, Burak, RONIN, Yefim, BARALDI, Elena, KAFKAS, Salih, KAFKAS, Nesibe Ebru

Source: Turkish Journal of Agriculture & Forestry; 2024, Vol. 48 Issue 5, p677-691, 41p

Subject Terms: LOCUS (Genetics), BIOTECHNOLOGY, SINGLE nucleotide polymorphisms, BOTRYTIS cinerea, GENE mapping, STRAWBERRIES

Reference gene selection for RT-qPCR normalization of strawberry at various organs, different growing stages of fruits, and salt-stress treatment.

Authors: TOPÇU, Hayat¹ hayattopcu@nku.edu.tr

Source: Turkish Journal of Agriculture & Forestry. 2022, Vol. 46 Issue 4, p509-524. 16p.

Subject Terms: *STRAWBERRIES, *FRUIT growing, *GENE expression, *CULTIVATED plants, *POLYMERASE chain reaction, *GENES

Using computational modeling to design antiviral strategies and understand plant-virus interactions.

Authors: KAMAL, Hira, ZAFAR, Muhammad Mubashar, RAZZAQ, Abdul, IJAZ, Aqsa, ANWAR, Zunaira, TOPÇU, Hayat, ELHINDI, Khalid M., SAEED, Asif, FATIMA, Urooj, Xuefei JIANG

Source: Turkish Journal of Agriculture & Forestry; 2024, Vol. 48 Issue 3, p417-429, 47p

Subject Terms: UBIQUITIN-conjugating enzymes, PLANT defenses, COMPUTATIONAL neuroscience, BEGOMOVIRUSES, HOST plants, DNA viruses, VIRAL proteins, GEMINIVIRIDAE

Geographic Terms: MULTAN (Pakistan)

Novel 307 polymorphic SSR markers from BAC-end sequences in walnut (Juglans regia L.): Effects of motif types and repeat lengths on polymorphism and genetic diversity

Authors: Ikhsan, Adi Surya, Topçu, Hayat, Sütyemez, Mehmet, Kafkas, Salih

Source: In Scientia Horticulturae 14 December 2016 213:1-4

Novel microsatellite markers in Pistacia vera L. and their transferability across the genus Pistacia

Authors: Topçu, Hayat, Çoban, Nergiz, Kafkas, Salih

Source: In Scientia Horticulturae 26 January 2016 198:91-97

Development of 185 polymorphic simple sequence repeat (SSR) markers from walnut (Juglans regia L.)

Authors: Topçu, Hayat, Ikhsan, Adi Surya, Sütyemez, Mehmet, Çoban, Nergiz, Güney, Murat, Kafkas, Salih

Source: In Scientia Horticulturae 14 October 2015 194:160-167

S_allele identification and genetic diversity analysis of apricot cultivars

Authors: Murathan, Zehra Tuğba, Kafkas, Salih, Asma, Bayram Murat, Topçu, Hayat

Source: Journal of horticultural science & biotechnology. 92(3):251-260

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100106344461.0x000001&indx=1&recIds=ETOCvdc_100106344461.0x000001

First microsatellite markers for Scaligeria lazica Boiss. (Apiaceae) by next-generation sequencing: population structure and genetic diversity analysis

Authors: Baldemir, Ayşe, Topçu, Hayat, Paksoy, Mehmet Yavuz, Motalebipour, Elmira Ziya, Kafkas, Salih

Source: Biotechnology, biotechnological equipment. 31(3):535-543

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100106212049.0x000001&indx=1&recIds=ETOCvdc_100106212049.0x000001

Novel 307 polymorphic SSR markers from BAC-end sequences in walnut (Juglans regia L.): Effects of motif types and repeat lengths on polymorphism and genetic diversity

Authors: Ikhsan, Adi Surya, Topçu, Hayat, Sütyemez, Mehmet, Kafkas, Salih

Source: Scientia horticulturae. 213:1-4

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100060819705.0x000001&indx=1&recIds=ETOCvdc_100060819705.0x000001

Construction of a high-density genetic linkage map and QTL analysis using an interspecific F1 population in pistachio.

Authors: Islam, Md Rashedul, Tevfik, Habibullah, Topçu, Hayat, Karcı, Harun, Kafkas, Salih

Source: Tree Genetics & Genomes; Aug2023, Vol. 19 Issue 4, p1-11, 11p

Subject Terms: PISTACHIO, GENE mapping, FOLIAR diagnosis, FOOD industry, INFLORESCENCES, SINGLE nucleotide polymorphisms

Geographic Terms: TURKEY

First simple sequence repeat-based genetic linkage map reveals a major QTL for leafing time in walnut (Juglans regia L.)

Authors: Kefayati, Sina, Ikhsan, Adi Surya, Sutyemez, Mehmet, Paizila, Aibibula, Topçu, Hayat, Bükücü, Şakir Burak, Kafkas, Salih

Source: Tree genetics & genomes. 15(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100127755053.0x000001&indx=1&recIds=ETOCvdc_100127755053.0x000001

Highly polymorphic novel simple sequence repeat markers from Class I repeats in walnut (Juglans regia L.).

Authors: ESER, Emre¹, TOPÇU, Hayat¹, KEFAYATI, Sina¹, SÜTYEMEZ, Mehmet², ISLAM, Rashedul¹, KAFKAS, Salih¹ skafkas@cu.edu.tr

Source: Turkish Journal of Agriculture & Forestry. 2019, Vol. 43 Issue 2, preceding p174-183. 36p.

Subject Terms: *WALNUT, *MICROSATELLITE repeats, *ENGLISH walnut, *POPULATION genetics, *NUCLEOTIDE sequence

Molecular Characterization of Almond Cultivars Using Simple Sequence Repeat Markers.

Alternate Title: Molekulare Charakterisierung von Mandelsorten mittels Simple Sequence Repeat (SSR)-Markern. (German)

Authors: Esgandaripirmorad, Farhad, Karcı, Harun, Paizila, Aibibula, Topçu, Hayat, Kafkas, Salih

Source: Erwerbs-Obstbau; Sep2022, Vol. 64 Issue 3, p463-474, 12p

Transcriptome Sequencing and Development of Novel Genic SSR Markers From Pistacia vera L.

Authors: Karcι, Harun, Paizila, Aibibula, Topçu, Hayat, Ilikçioğlu, Ertuğrul, Kafkas, Salih

Source: Frontiers in Genetics; 9/9/2020, Vol. 11, pN.PAG-N.PAG, 15p

Subject Terms: PISTACHIO, MICROSATELLITE repeats, PISTACIA, POLYMERASE chain reaction, GENE mapping

S _allele identification and genetic diversity analysis of apricot cultivars.

Authors: Murathan, Zehra Tuğba, Kafkas, Salih, Asma, Bayram Murat, Topçu, Hayat

Source: Journal of Horticultural Science & Biotechnology; May2017, Vol. 92 Issue 3, p251-260, 10p

Subject Terms: POLYMERASE chain reaction, APRICOT

First microsatellite markers for Scaligeria lazicaBoiss. (Apiaceae) by next-generation sequencing: population structure and genetic diversity analysis

Authors: Baldemir, Ayşe, Topçu, Hayat, Paksoy, Mehmet Yavuz, Motalebipour, Elmira Ziya, Kafkas, Salih

Source: Biotechnology & Biotechnological Equipment; May 2017, Vol. 31 Issue: 3 p535-543, 9p

Pistachio genomes provide insights into nut tree domestication and ZW sex chromosome evolution

Authors: Kafkas, Salih, Ma, Xiaokai, Zhang, Xingtan, Topçu, Hayat, Navajas-Pérez, Rafael, Wai, Ching Man, Tang, Haibao, Xu, Xuming, Khodaeiaminjan, Mortaza, Güney, Murat, Paizila, Aibibula, Karcı, Harun, Zhang, Xiaodan, Lin, Jing, Lin, Han, Herrán, Roberto de la, Rejón, Carmelo Ruiz, García-Zea, Jerson Alexander, Robles, Francisca, Muñoz, Coral del Val, Hotz-Wagenblatt, Agnes, Min, Xiangjia Jack, Özkan, Hakan, Motalebipour, Elmira Ziya, Gozel, Hatice, Çoban, Nergiz, Kafkas, Nesibe Ebru, Kilian, Andrej, Huang, HuaXing, Lv, Xuanrui, Liu, Kunpeng, Hu, Qilin, Jacygrad, Ewelina, Palmer, William, Michelmore, Richard, Ming, Ray

Source: Plant Communications; 20220101, Issue: Preprints