Knowledge-Informed Machine Learning for Cancer Diagnosis and Prognosis: A review

Authors: Mao, Lingchao, Wang, Hairong, Hu, Leland S., Tran, Nhan L, Canoll, Peter D, Swanson, Kristin R, Li, Jing

Subject Terms: Computer Science - Machine Learning, Computer Science - Artificial Intelligence, 92B99

Access URL: http://arxiv.org/abs/2401.06406

Quantifying intra-tumoral genetic heterogeneity of glioblastoma toward precision medicine using MRI and a data-inclusive machine learning algorithm

Authors: Wang, Lujia, Wang, Hairong, D'Angelo, Fulvio, Curtin, Lee, Sereduk, Christopher P., De Leon, Gustavo, Singleton, Kyle W., Urcuyo, Javier, Hawkins-Daarud, Andrea, Jackson, Pamela R., Krishna, Chandan, Zimmerman, Richard S., Patra, Devi P., Bendok, Bernard R., Smith, Kris A., Nakaji, Peter, Donev, Kliment, Baxter, Leslie C., Mrugała, Maciej M., Ceccarelli, Michele, Iavarone, Antonio, Swanson, Kristin R., Tran, Nhan L., Hu, Leland S., Li, Jing

Subject Terms: Computer Science - Machine Learning, Computer Science - Computer Vision and Pattern Recognition, Mathematics - Optimization and Control

Access URL: http://arxiv.org/abs/2401.00128

Robust Automatic Whole Brain Extraction on Magnetic Resonance Imaging of Brain Tumor Patients using Dense-Vnet

Authors: Ranjbar, Sara, Singleton, Kyle W., Curtin, Lee, Rickertsen, Cassandra R., Paulson, Lisa E., Hu, Leland S., Mitchell, J. Ross, Swanson, Kristin R.

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2006.02627

Learning Equations from Biological Data with Limited Time Samples

Authors: Nardini, John T., Lagergren, John H., Hawkins-Daarud, Andrea, Curtin, Lee, Morris, Bethan, Rutter, Erica M., Swanson, Kristin R., Flores, Kevin B.

Subject Terms: Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/2005.09622

Sex differences in predicting fluid intelligence of adolescent brain from T1-weighted MRIs

Authors: Ranjbar, Sara, Singleton, Kyle W., Curtin, Lee, Massey, Susan Christine, Hawkins-Daarud, Andrea, Jackson, Pamela R., Swanson, Kristin R.

Subject Terms: Quantitative Biology - Neurons and Cognition, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/1908.02333

A digital reference object for the 3D Hoffman brain phantom for characterization of PET neuroimaging quality

Authors: Harrison, Robert L., Elston, Brian F., Byrd, Darrin W., Alessio, Adam M., Jacobs, Joshua, Rockne, Russell C., Hawkins-Daarud, Andrea, Muzi, Mark, Johnston, Sandra K., Jackson, Pamela R., Swanson, Kristin R., Kinahan, Paul E.

Source: 2013 IEEE Nuclear Science Symposium and Medical Imaging Conference (2013 NSS/MIC) Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2013 IEEE. :1-4 Oct, 2013

Relation: 2013 IEEE Nuclear Science Symposium and Medical Imaging Conference (2013 NSS/MIC)

Simulated Diffusion Weighted Images Based on Model-Predicted Tumor Growth
5th Conference on Simulation and Synthesis in Medical Imaging

Authors: Jackson, Pamela R., Hawkins-Daarud, Andrea, Swanson, Kristin R.

Source: Lecture notes in computer science. 12417:32-40

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN606351495&indx=1&recIds=ETOCCN606351495

Sex differences in health and disease: A review of biological sex differences relevant to cancer with a spotlight on glioma

Authors: Massey, Susan Christine, Whitmire, Paula, Doyle, Tatum E., Ippolito, Joseph E., Mrugala, Maciej M., Hu, Leland S., Canoll, Peter, Anderson, Alexander R.A., Wilson, Melissa A., Fitzpatrick, Susan M., McCarthy, Margaret M., Rubin, Joshua B., Swanson, Kristin R.

Source: In Cancer Letters 1 February 2021 498:178-187

Knowledge-Infused Global-Local Data Fusion for Spatial Predictive Modeling in Precision Medicine

Authors: Wang, Lujia, Hawkins-Daarud, Andrea, Swanson, Kristin R., Hu, Leland S., Li, Jing

Source: IEEE transactions on automation science and engineering. 19(3):2203-2215

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100154881812.0x000001&indx=1&recIds=ETOCvdc_100154881812.0x000001

Imaging of intratumoral heterogeneity in high-grade glioma

Authors: Hu, Leland S., Hawkins-Daarud, Andrea, Wang, Lujia, Li, Jing, Swanson, Kristin R.

Source: In Cancer Letters 1 May 2020 477:97-106

Improved model prediction of glioma growth utilizing tissue-specific boundary effects

Authors: Jacobs, Joshua, Rockne, Russell C., Hawkins-Daarud, Andrea J., Jackson, Pamela R., Johnston, Sandra K., Kinahan, Paul, Swanson, Kristin R.

Source: In Mathematical Biosciences June 2019 312:59-66

Technical Note: A digital reference object representing Hoffman's 3D brain phantom for PET scanner simulations

Authors: Harrison, Robert L., Elston, Brian F., Byrd, Darrin W., Alessio, Adam M., Swanson, Kristin R., Kinahan, Paul E.

Source: Medical physics. 47(3):1174-1180

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100103544659.0x000001&indx=1&recIds=ETOCvdc_100103544659.0x000001

A Deep Convolutional Neural Network for Annotation of Magnetic Resonance Imaging Sequence Type

Authors: Ranjbar, Sara, Singleton, Kyle W., Jackson, Pamela R., Rickertsen, Cassandra R., Whitmire, Scott A., Clark-Swanson, Kamala R., Mitchell, J. Ross, Swanson, Kristin R., Hu, Leland S.

Source: Journal of digital imaging. 33(2):439-446

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100168216477.0x000001&indx=1&recIds=ETOCvdc_100168216477.0x000001

Biologically informed deep neural networks provide quantitative assessment of intratumoral heterogeneity in post treatment glioblastoma.

Authors: Wang, Hairong, Argenziano, Michael G., Yoon, Hyunsoo, Boyett, Deborah, Save, Akshay, Petridis, Petros, Savage, William, Jackson, Pamela, Hawkins-Daarud, Andrea, Tran, Nhan, Hu, Leland, Singleton, Kyle W., Paulson, Lisa, Dalahmah, Osama Al, Bruce, Jeffrey N., Grinband, Jack, Swanson, Kristin R., Canoll, Peter, Li, Jing

Source: NPJ Digital Medicine; 10/19/2024, Vol. 7 Issue 1, p1-14, 14p

Subject Terms: GLIOMA treatment, BIOPSY, GLIOMAS, PREDICTION models, COMPUTER-assisted image analysis (Medicine), CANCER relapse, ACADEMIC medical centers, RESEARCH funding, NEURONS, CELL proliferation, TREATMENT effectiveness, CANCER patients, MAGNETIC resonance imaging, CELL cycle, DESCRIPTIVE statistics, GENE expression, RNA, IMMUNOHISTOCHEMISTRY, LONGITUDINAL method, ARTIFICIAL neural networks, CYTOKINES, NEURORADIOLOGY, COMPARATIVE studies, MACHINE learning, INDIVIDUALIZED medicine, INFLAMMATION, SENSITIVITY & specificity (Statistics), HISTOLOGY, MOLECULAR pathology, SEQUENCE analysis, IMMUNITY, EVALUATION

Geographic Terms: NEW York (State)

A Spatial Model of Tumor-Host Interaction: Application of Chemotherapy

Authors: Hinow, Peter, Gerlee, Philip, McCawley, Lisa J., Quaranta, Vito, Ciobanu, Madalina, Wang, Shizhen, Graham, Jason M., Ayati, Bruce P., Claridge, Jonathan, Swanson, Kristin R., Loveless, Mary, Anderson, Alexander R. A.

Source: Math. Biosci. Eng. 6(3):521-545, 2009

Subject Terms: Quantitative Biology - Tissues and Organs, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/0810.1024

Lesion Dynamics Under Varying Paracrine PDGF Signaling in Brain Tissue

Authors: Massey, Susan Christine, Hawkins-Daarud, Andrea, Gallaher, Jill, Anderson, Alexander R. A., Canoll, Peter, Swanson, Kristin R.

Source: Bulletin of mathematical biology. 81(6):1645-1664

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100124787323.0x000001&indx=1&recIds=ETOCvdc_100124787323.0x000001

Automatic 3D Nonlinear Registration of Mass Spectrometry Imaging and Magnetic Resonance Imaging Data

Authors: Abdelmoula, Walid M., Regan, Michael S., Lopez, Begona G. C., Randall, Elizabeth C., Lawler, Sean, Mladek, Ann C., Nowicki, Michal O., Marin, Bianca M., Agar, Jeffrey N., Swanson, Kristin R.

Source: Analytical chemistry. 91(9):6206-6216

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN620150974&indx=1&recIds=ETOCRN620150974

Weakly-Supervised Transfer Learning With Application in Precision Medicine

Authors: Mao, Lingchao, Wang, Lujia, Hu, Leland S., Eschbacher, Jenny M., Leon, Gustavo De, Singleton, Kyle W., Curtin, Lee A., Urcuyo, Javier, Sereduk, Chris, Tran, Nhan L., Hawkins-Daarud, Andrea, Swanson, Kristin R., Li, Jing

Source: IEEE Transactions on Automation Science and Engineering: A Publication of the IEEE Robotics and Automation Society; October 2024, Vol. 21 Issue: 4 p6250-6264, 15p

Awake Surgery for Brain Vascular Malformations and Moyamoya Disease

Authors: Aoun, Rami James N., Sattur, Mithun G., Krishna, Chandan, Gupta, Amen, Welz, Matthew E., Nanney, Allan D., III, Koht, Antoun H., Tate, Matthew C., Noe, Katherine H., Sirven, Joseph I., Anderies, Barrett J., Bolton, Patrick B., Trentman, Terry L., Zimmerman, Richard S., Swanson, Kristin R., Bendok, Bernard R.

Source: In World Neurosurgery September 2017 105:659-671

War on Glioblastoma Multiforme: 2-Pronged Siege on Glutamine

Authors: Panchanathan, Roshan S., Sittur, Mithun G., Aoun, Rami James N., Pines, Andrew R., Swanson, Kristin R., Bendok, Bernard R.

Source: In World Neurosurgery July 2016 91:254-256