Quantifying Suicide Risk in Prostate Cancer: A SEER-Based Predictive Model

Authors: Jiaxing Du, Fen Zhang, Weinan Zheng, Xue Lu, Huiyi Yu, Jian Zeng, Sujun Chen

Source: Journal of Epidemiology and Global Health, Vol 15, Iss 1, Pp 1-13 (2025)

Subject Terms: Prostate cancer, Suicide, Nomogram, SEER, Risk prediction, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/2210-6014

Access URL: https://doaj.org/article/1d557d35606448acbdc1615dffb0e602

Facilitating integrative and personalized oncology omics analysis with UCSCXenaShiny

Authors: Shensuo Li, Yuzhong Peng, Minjun Chen, Yankun Zhao, Yi Xiong, Jianfeng Li, Peng Luo, Haitao Wang, Fei Zhao, Qi Zhao, Yanru Cui, Sujun Chen, Jian-Guo Zhou, Shixiang Wang

Source: Communications Biology, Vol 7, Iss 1, Pp 1-9 (2024)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/8e4c2b78349f478aa823decbe366adb5

Oral pimonidazole unveils clinicopathologic and epigenetic features of hypoxic tumour aggressiveness in localized prostate cancer

Authors: Xinpei Ci, Sujun Chen, Rui Zhu, Mojgan Zarif, Rahi Jain, Wangyuan Guo, Matthew Ramotar, Linsey Gong, Wenjie Xu, Olivia Singh, Sheila Mansouri, Gelareh Zadeh, Gong-Hong Wei, Wei Xu, Robert Bristow, Alejandro Berlin, Marianne Koritzinsky, Theodorus van der Kwast, Housheng Hansen He

Source: BMC Cancer, Vol 24, Iss 1, Pp 1-12 (2024)

Subject Terms: Prostate Cancer, Hypoxia, DNA Methylation, PIMO, Biomarker, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2407

Access URL: https://doaj.org/article/0536003d350a4933803620ed43e2f7a7

MYC reshapes CTCF-mediated chromatin architecture in prostate cancer

Authors: Zhao Wei, Song Wang, Yaning Xu, Wenzheng Wang, Fraser Soares, Musaddeque Ahmed, Ping Su, Tingting Wang, Elias Orouji, Xin Xu, Yong Zeng, Sujun Chen, Xiaoyu Liu, Tianwei Jia, Zhaojian Liu, Lutao Du, Yunshan Wang, Shaoyong Chen, Chuanxin Wang, Housheng Hansen He, Haiyang Guo

Source: Nature Communications, Vol 14, Iss 1, Pp 1-15 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/84b0d42ea2594926b5b703df0d091ebc

The cell-free DNA methylome captures distinctions between localized and metastatic prostate tumors

Authors: Sujun Chen, Jessica Petricca, Wenbin Ye, Jiansheng Guan, Yong Zeng, Nicholas Cheng, Linsey Gong, Shu Yi Shen, Junjie T. Hua, Megan Crumbaker, Michael Fraser, Stanley Liu, Scott V. Bratman, Theodorus van der Kwast, Trevor Pugh, Anthony M. Joshua, Daniel D. De Carvalho, Kim N. Chi, Philip Awadalla, Guoli Ji, Felix Feng, Alexander W. Wyatt, Housheng Hansen He

Source: Nature Communications, Vol 13, Iss 1, Pp 1-14 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7b26255c7880443b834672c94a98b048

Genome-wide studies in prostate cancer poised liquid biopsy as a molecular discovery tool

Authors: Nicholas Lo, Housheng Hansen He, Sujun Chen

Source: Frontiers in Oncology, Vol 13 (2023)

Subject Terms: prostate cancer, liquid biopsy, deep genomic sequencing, genome-wide methylation analysis, disease progression, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2023.1185013/full; https://doaj.org/toc/2234-943X

Access URL: https://doaj.org/article/8875665cbc4d468686eaaf3d05243e3e

Right subclavian vein approach for selective left bundle branch pacing: A case report

Authors: Xinhui Peng, Longfu Jiang, Sujun Chen, Haiming Feng

Source: Annals of Noninvasive Electrocardiology, Vol 28, Iss 1, Pp n/a-n/a (2023)

Subject Terms: connecting cable, left bundle branch pacing, right subclavian vein, tricuspid valve annulus angiography, Diseases of the circulatory (Cardiovascular) system, RC666-701

File Description: electronic resource

Relation: https://doaj.org/toc/1082-720X; https://doaj.org/toc/1542-474X

Access URL: https://doaj.org/article/c863376813bd46dc8b8657d5865df5b0

CRISPRi screens reveal a DNA methylation-mediated 3D genome dependent causal mechanism in prostate cancer

Authors: Musaddeque Ahmed, Fraser Soares, Ji-Han Xia, Yue Yang, Jing Li, Haiyang Guo, Peiran Su, Yijun Tian, Hyung Joo Lee, Miranda Wang, Nayeema Akhtar, Kathleen E. Houlahan, Almudena Bosch, Stanley Zhou, Parisa Mazrooei, Junjie T. Hua, Sujun Chen, Jessica Petricca, Yong Zeng, Alastair Davies, Michael Fraser, David A. Quigley, Felix Y. Feng, Paul C. Boutros, Mathieu Lupien, Amina Zoubeidi, Liang Wang, Martin J. Walsh, Ting Wang, Shancheng Ren, Gong-Hong Wei, Housheng Hansen He

Source: Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/e7aa25730939461e8ebe506e7b821266

Haploinsufficiency of RREB1 causes a Noonan-like RASopathy via epigenetic reprogramming of RAS-MAPK pathway genes

Authors: Oliver A. Kent, Manipa Saha, Etienne Coyaud, Helen E. Burston, Napoleon Law, Keith Dadson, Sujun Chen, Estelle M. Laurent, Jonathan St-Germain, Ren X. Sun, Yoshinori Matsumoto, Justin Cowen, Aaryn Montgomery-Song, Kevin R. Brown, Charles Ishak, Jose La Rose, Daniel D. De Carvalho, Housheng Hansen He, Brian Raught, Filio Billia, Peter Kannu, Robert Rottapel

Source: Nature Communications, Vol 11, Iss 1, Pp 1-12 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7477dd54517347169cc4551af1667746

HNRNPM controls circRNA biogenesis and splicing fidelity to sustain cancer cell fitness

Authors: Jessica SY Ho, Federico Di Tullio, Megan Schwarz, Diana Low, Danny Incarnato, Florence Gay, Tommaso Tabaglio, JingXian Zhang, Heike Wollmann, Leilei Chen, Omer An, Tim Hon Man Chan, Alexander Hall Hickman, Simin Zheng, Vladimir Roudko, Sujun Chen, Alcida Karz, Musaddeque Ahmed, Housheng Hansen He, Benjamin D Greenbaum, Salvatore Oliviero, Michela Serresi, Gaetano Gargiulo, Karen M Mann, Eva Hernando, David Mulholland, Ivan Marazzi, Dave Keng Boon Wee, Ernesto Guccione

Source: eLife, Vol 10 (2021)

Subject Terms: splicing, antisense oligonucleotides, circular RNA, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/59654; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/bb9c4ec7e7bc4cdb8d75d13a76778524

ONECUT2 is a driver of neuroendocrine prostate cancer

Authors: Haiyang Guo, Xinpei Ci, Musaddeque Ahmed, Junjie Tony Hua, Fraser Soares, Dong Lin, Loredana Puca, Aram Vosoughi, Hui Xue, Estelle Li, Peiran Su, Sujun Chen, Tran Nguyen, Yi Liang, Yuzhe Zhang, Xin Xu, Jing Xu, Anjali V. Sheahan, Wail Ba-Alawi, Si Zhang, Osman Mahamud, Ravi N. Vellanki, Martin Gleave, Robert G. Bristow, Benjamin Haibe-Kains, John T. Poirier, Charles M. Rudin, Ming-Sound Tsao, Bradly G. Wouters, Ladan Fazli, Felix Y. Feng, Leigh Ellis, Theo van der Kwast, Alejandro Berlin, Marianne Koritzinsky, Paul C. Boutros, Amina Zoubeidi, Himisha Beltran, Yuzhuo Wang, Housheng Hansen He

Source: Nature Communications, Vol 10, Iss 1, Pp 1-13 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/15eb3a591377407ab3aae62e9aca95cb

Context-Sensitive Correlation and Fuzzy Collaborative Clustering Based Unsupervised Change Detection

Authors: Chao, Li, Sujun, Chen, Huiying, Ru

Source: 2018 14th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD) Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD), 2018 14th International Conference on. :602-608 Jul, 2018

Relation: 2018 14th International Conference on Natural Computation, Fuzzy Systems and Knowledge Discovery (ICNC-FSKD)

Genome-wide studies in prostate cancer poised liquid biopsy as a molecular discovery tool.

Authors: Lo, Nicholas, Housheng Hansen He, Sujun Chen

Source: Frontiers in Oncology; 2023, p1-6, 6p

Subject Terms: PROSTATE cancer, BIOPSY, PROSTATE biopsy, DISEASE progression, LIQUIDS, NUCLEOTIDE sequence

SETD7 functions as a transcription repressor in prostate cancer via methylating FOXA1.

Authors: Zifeng Wang, Petricca, Jessica, Mingyu Liu, Songqi Zhang, Sujun Chen, Muqing Li, Besschetnova, Anna, Patalano, Susan, Venkataramani, Kavita, Siegfried, Kellee R., Macoska, Jill A., Dong Han, Shuai Gao, Vedadi, Masoud, Arrowsmith, Cheryl H., Housheng Hansen He, Changmeng Cai

Source: Proceedings of the National Academy of Sciences of the United States of America; 8/15/2023, Vol. 120 Issue 33, p1-10, 33p

Subject Terms: PROSTATE cancer, CASTRATION-resistant prostate cancer, ANDROGEN receptors, HISTONE methyltransferases, TRANSCRIPTION factors

Transcriptional landscape of the human cell cycle.

Authors: Yin Liu^1,2,3, Sujun Chen^1,2,4,5, Su Wang^2,3,6, Soares, Fraser⁴, Fischer, Martin⁷, Feilong Meng⁸, Zhou Du^2,3,9, Lin, Charles¹⁰, Meyer, Clifford^3,11, DeCaprio, James A.⁷, Brown, Myles^3,7 myles_brown@dfci.harvard.edu, Liu, X. Shirley^3,11 xsliu@jimmy.harvard.edu, Housheng Hansen He^4,5 hansenhe@uhnresearch.ca

Source: Proceedings of the National Academy of Sciences of the United States of America. 3/28/2017, Vol. 114 Issue 13, p3473-3478. 6p. 5 Graphs.

Subject Terms: *GENE regulatory networks, *HUMAN cell cycle, *CELL cycle, *MAMMALIAN cell cycle, *BREAST cancer

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.

Authors: Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Meyer, Clifford A., Yong Zhang, Brown, Myles, Long, Henry W., Liu, X. Shirley

Source: BMC Bioinformatics; 10/3/2016, Vol. 17, p1-13, 13p, 2 Diagrams, 3 Graphs

Subject Terms: GENETIC regulation, TRANSCRIPTION factors, HISTONES, QUALITY control, DNA-protein interactions, COMPUTER software

Key circular RNAs identified in male osteoporosis patients by whole transcriptome sequencing

Authors: Haijin Zhang, Xue Song, Zongyan Teng, Sujun Cheng, Weigang Yu, Xiaoyi Yao, Zhiqiang Song, Yina Zhang

Source: PeerJ, Vol 9, p e11420 (2021)

Subject Terms: Whole transcriptome sequencing, Male osteoporosis, Non-coding RNAs, circRNAs, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/11420.pdf; https://peerj.com/articles/11420/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/750d7fea2330481290569cf1505c2066

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