TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools

Authors: Gao, Shanghua, Zhu, Richard, Kong, Zhenglun, Noori, Ayush, Su, Xiaorui, Ginder, Curtis, Tsiligkaridis, Theodoros, Zitnik, Marinka

Subject Terms: Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2503.10970

Multimodal AI predicts clinical outcomes of drug combinations from preclinical data

Authors: Huang, Yepeng, Su, Xiaorui, Ullanat, Varun, Liang, Ivy, Clegg, Lindsay, Olabode, Damilola, Ho, Nicholas, John, Bino, Gibbs, Megan, Zitnik, Marinka

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2503.02781

Multimodal Medical Code Tokenizer

Authors: Su, Xiaorui, Messica, Shvat, Huang, Yepeng, Johnson, Ruth, Fesser, Lukas, Gao, Shanghua, Sahneh, Faryad, Zitnik, Marinka

Subject Terms: Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2502.04397

Learning Sequential and Structural Dependencies Between Nucleotides for RNA N6-Methyladenosine Site Identification

Authors: Li, Guodong, Zhao, Bowei, Su, Xiaorui, Li, Dongxu, Yang, Yue, Zeng, Zhi, Hu, Lun

Source: IEEE/CAA Journal of Automatica Sinica IEEE/CAA J. Autom. Sinica Automatica Sinica, IEEE/CAA Journal of. 11(10):2123-2134 Oct, 2024

KGARevion: An AI Agent for Knowledge-Intensive Biomedical QA

Authors: Su, Xiaorui, Wang, Yibo, Gao, Shanghua, Liu, Xiaolong, Giunchiglia, Valentina, Clevert, Djork-Arné, Zitnik, Marinka

Source: ICLR2025

Subject Terms: Computer Science - Artificial Intelligence

Access URL: http://arxiv.org/abs/2410.04660

Learning RNA sequence patterns to interpretably identify m6A modification sites

Authors: Li, Guodong, Zhao, Bowei, Su, Xiaorui, Yang, Yue, Hu, Pengwei, Hu, Lun

Source: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2023 IEEE International Conference on. :1248-1253 Dec, 2023

Relation: 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Drug Repositioning Method Based on Pre-trained Large Model and Network Embedding Representation

Authors: Li, Dongxu, Zhao, Bowei, Su, Xiaorui, Li, Guodong, Yang, Yue, Hu, Pengwei, Hu, Lun

Source: 2023 IEEE International Conference on Data Mining Workshops (ICDMW) ICDMW Data Mining Workshops (ICDMW), 2023 IEEE International Conference on. :418-423 Dec, 2023

Relation: 2023 IEEE International Conference on Data Mining Workshops (ICDMW)

A Novel Fuzzy-Based MOPSO Algorithm for Identifying Clusters From Complex Networks

Authors: Yang, Yue, Su, Xiaorui, Zhao, Bowei, He, Yizhou, Hu, Lun

Source: 2022 IEEE 34th International Conference on Tools with Artificial Intelligence (ICTAI) ICTAI Tools with Artificial Intelligence (ICTAI), 2022 IEEE 34th International Conference on. :1126-1131 Oct, 2022

Relation: 2022 IEEE 34th International Conference on Tools with Artificial Intelligence (ICTAI)

Capturing short-range and long-range dependencies of nucleotides for identifying RNA N6-methyladenosine modification sites

Authors: Li, Guodong ^{a, b, c}, Zhao, Bowei ^{a, b, c}, Su, Xiaorui ^{a, b, c}, Yang, Yue ^{a, b, c}, Zeng, Zhi ^d, Hu, Pengwei ^{a, b, c}, Hu, Lun ^{a, b, c, ⁎}

Source: In Computers in Biology and Medicine March 2025 186

Prediction of LncRNA-Disease Associations Based on Network Representation Learning

Authors: Su, Xiaorui, You, Zhuhong, Yi, Haicheng

Source: 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Bioinformatics and Biomedicine (BIBM), 2020 IEEE International Conference on. :1805-1812 Dec, 2020

Relation: 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Comparative analysis of hepatectomy for HCC with PVTT: Insights from a 30-year single-center experience: Hepatectomy for HCC with PVTT

Authors: Yao, Zhicheng ^{a, b, 1}, Ren, Yupeng ^{c, 1}, Cao, Mingbo ^c, Li, Yuxuan ^c, Su, Xiaorui ^a, Hu, Ziyi ^a, Han, Pei ^b, Yuen, Ho Kam ^b, Cheung, Tan To ^{b, ⁎}

Source: In Surgical Oncology June 2025 60

The modulation of cholecystokinin receptor 1 in the NAc core input from VTA on METH-induced CPP acquisition

Authors: Wang, Jian ^{a, 1}, Zhang, Minglong ^{a, b, 1}, Sun, Yufei ^a, Su, Xiaorui ^a, Hui, Rongji ^a, Zhang, Ludi ^{a, c}, Xie, Bing ^a, Cong, Bin ^{a, f}, Luo, Yixiao ^{d, e}, Wen, Di ^{a, c, f, ⁎}, Ma, Chunling ^{a, c, f, ⁎}

Source: In Life Sciences 15 January 2025 361

A Deep Learning Approach Incorporating Data Missing Mechanism in Predicting Acute Kidney Injury in ICU
19th International conference on intelligent computing (Advanced intelligent computing technology and applications, ICIC 2023)

Authors: Zhang, Yuan, Zhang, Zhengbo, Liu, Xiaoli, Zha, Lei, Fengcong, Su, Xiaorui, Zhao, Bowei, Hu, Lun, Hu, Pengwei

Source: Lecture notes in computer science. 14088:335-346

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN608388410&indx=1&recIds=ETOCCN608388410

A new strategy for overcoming drug resistance in liver cancer: Epigenetic regulation

Authors: Su, Xiaorui, Li, Yuxuan, Ren, Yupeng, Cao, Mingbo, Yang, Gaoyuan, Luo, Jing, Hu, Ziyi, Deng, Haixia, Deng, Meihai, Liu, Bo, Yao, Zhicheng

Source: In Biomedicine & Pharmacotherapy July 2024 176

A bijective inference network for interpretable identification of RNA N[formula omitted]-methyladenosine modification sites

Authors: Li, Guodong ^{a, b, c}, Yang, Yue ^{a, b, c}, Li, Dongxu ^{a, b, c}, Su, Xiaorui ^d, Zeng, Zhi ^e, Hu, Pengwei ^{a, b, c}, Hu, Lun ^{a, b, c, ⁎}

Source: In Pattern Recognition August 2025 164

Development and External Validation of an MRI-based Radiomics Nomogram to Distinguish Circumscribed Astrocytic Gliomas and Diffuse Gliomas: A Multicenter Study

Authors: Li, Shuang, Su, Xiaorui, Peng, Juan, Chen, Ni, Liu, Yanhui, Zhang, Simin, Shao, Hanbing, Tan, Qiaoyue, Yang, Xibiao, Liu, Yaou, Gong, Qiyong, Yue, Qiang

Source: In Academic Radiology February 2024 31(2):639-647

Magnetic Resonance Imaging Features of Zinc Finger Translocation Associated-RELA Fusion Ependymoma Compared to Its Wild-Type Counterpart

Authors: Shao, Hanbing, Chen, Ni, Su, Xiaorui, Zheng, Linmao, Yang, Xibiao, Wan, Xinyue, Zhang, Simin, Tan, Qiaoyue, Li, Shuang, Gong, Qiyong, Yue, Qiang

Source: World neurosurgery. 175:e1283-e1291

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194405089.0x000001&indx=1&recIds=ETOCvdc_100194405089.0x000001

Deep Learning for Noninvasive Assessment of H3 K27M Mutation Status in Diffuse Midline Gliomas Using MR Imaging

Authors: Li, Junjie, Zhang, Peng, Qu, Liying, Sun, Ting, Duan, Yunyun, Wu, Minghao, Weng, Jinyuan, Li, Zhaohui, Gong, Xiaodong, Liu, Xing, Wang, Yongzhi, Jia, Wenqing, Su, Xiaorui, Yue, Qiang, Li, Jianrui, Zhang, Zhiqiang, Barkhof, Frederik, Huang, Raymond Y., Chang, Ken, Sair, Haris, Ye, Chuyang, Zhang, Liwei, Zhuo, Zhizheng, Liu, Yaou

Source: Journal of magnetic resonance imaging. 58(3):850-861

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191317616.0x000001&indx=1&recIds=ETOCvdc_100191317616.0x000001

An MRI Study Combining Virtual Brain Grafting and Surface‐Based Morphometry Analysis to Investigate Contralateral Alterations in Cortical Morphology in Patients With Diffuse Low‐Grade Glioma

Authors: Zhang, Simin, Sun, Huaiqiang, Yang, Xibiao, Wan, Xinyue, Tan, QiaoYue, Li, Shuang, Shao, Hanbin, Su, Xiaorui, Yue, Qiang, Gong, Qiyong

Source: Journal of magnetic resonance imaging. 58(3):741-749

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100189973780.0x000001&indx=1&recIds=ETOCvdc_100189973780.0x000001

Multiparametric mapping of white matter reorganizations in patients with frontal glioma‐related epilepsy

Authors: Zhang, Simin, Zhao, Fei, Yang, Xibiao, Tan, Qiaoyue, Li, Shuang, Shao, Hanbin, Su, Xiaorui, Gong, Qiyong, Yue, Qiang

Source: CNS neuroscience & therapeutics. 29(8):2366-2376

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187360357.0x000001&indx=1&recIds=ETOCvdc_100187360357.0x000001