ROOD-MRI: Benchmarking the robustness of deep learning segmentation models to out-of-distribution and corrupted data in MRI

Authors: Boone, Lyndon, Biparva, Mahdi, Forooshani, Parisa Mojiri, Ramirez, Joel, Masellis, Mario, Bartha, Robert, Symons, Sean, Strother, Stephen, Black, Sandra E., Heyn, Chris, Martel, Anne L., Swartz, Richard H., Goubran, Maged

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2203.06060

The Impact of Preprocessing Pipeline Choice in Univariate and Multivariate Analyses of PET Data

Authors: Norgaard, Martin, Greve, Douglas N., Svarer, Claus, Strother, Stephen C., Knudsen, Gitte M., Ganz, Melanie

Source: 2018 International Workshop on Pattern Recognition in Neuroimaging (PRNI) Pattern Recognition in Neuroimaging (PRNI), 2018 International Workshop on. :1-4 Jun, 2018

Relation: 2018 International Workshop on Pattern Recognition in Neuroimaging (PRNI)

Assessing remission in major depressive disorder using a functional-structural data fusion pipeline: A CAN-BIND-1 study

Authors: Ayyash, Sondos, Davis, Andrew D., Alders, Gésine L., MacQueen, Glenda, Strother, Stephen C., Hassel, Stefanie, Zamyadi, Mojdeh, Arnott, Stephen R., Harris, Jacqueline K., Lam, Raymond W., Milev, Roumen, Müller, Daniel J., Kennedy, Sidney H., Rotzinger, Susan, Frey, Benicio N., Minuzzi, Luciano, Hall, Geoffrey B.

Source: In IBRO Neuroscience Reports June 2024 16:135-146

An empirical analysis of structural neuroimaging profiles in a staging model of depression

Authors: Nogovitsyn, Nikita, Ballester, Pedro, Lasby, Mike, Dunlop, Katharine, Ceniti, Amanda K., Squires, Scott, Rowe, Jessie, Ho, Keith, Suh, JeeSu, Hassel, Stefanie, Souza, Roberto, Casseb, Raphael F., Harris, Jacqueline K., Zamyadi, Mojdeh, Arnott, Stephen R., Strother, Stephen C., Hall, Geoffrey, Lam, Raymond W., Poppenk, Jordan, Lebel, Catherine, Bray, Signe, Metzak, Paul, MacIntosh, Bradley J., Goldstein, Benjamin I., Wang, JianLi, Rizvi, Sakina J., MacQueen, Glenda, Addington, Jean, Harkness, Kate L., Rotzinger, Susan, Kennedy, Sidney H., Frey, Benicio N.

Source: In Journal of Affective Disorders 15 April 2024 351:631-640

Relation of hippocampal volume and SGK1 gene expression to treatment remission in major depression is moderated by childhood maltreatment: A CAN-BIND-1 report

Authors: Mazurka, Raegan, Cunningham, Simone, Hassel, Stefanie, Foster, Jane A., Nogovitsyn, Nikita, Fiori, Laura M., Strother, Stephen C., Arnott, Stephen R., Frey, Benicio N., Lam, Raymond W., MacQueen, Glenda M., Milev, Roumen V., Rotzinger, Susan, Turecki, Gustavo, Kennedy, Sidney H., Harkness, Kate L.

Source: In European Neuropsychopharmacology January 2024 78:71-80

ROOD-MRI: Benchmarking the robustness of deep learning segmentation models to out-of-distribution and corrupted data in MRI

Authors: Boone, Lyndon, Biparva, Mahdi, Mojiri Forooshani, Parisa, Ramirez, Joel, Masellis, Mario, Bartha, Robert, Symons, Sean, Strother, Stephen, Black, Sandra E., Heyn, Chris, Martel, Anne L., Swartz, Richard H., Goubran, Maged

Source: In NeuroImage September 2023 278

Response Inhibition and Predicting Response to Pharmacological and Cognitive Behavioral Therapy Treatments for Major Depressive Disorder: A Canadian Biomarker Integration Network for Depression Study

Authors: Dhami, Prabhjot, Quilty, Lena C., Schwartzmann, Benjamin, Uher, Rudolf, Allen, Timothy A., Kloiber, Stefan, Lam, Raymond W., MacQueen, Glenda, Frey, Benicio N., Milev, Roumen, Müller, Daniel J., Strother, Stephen C., Blier, Pierre, Soares, Claudio N., Parikh, Sagar V., Turecki, Gustavo, Foster, Jane A., Rotzinger, Susan, Kennedy, Sidney H., Farzan, Faranak

Source: In Biological Psychiatry: Cognitive Neuroscience and Neuroimaging February 2023 8(2):162-170

Language discordance as a marker of disparities in cerebrovascular risk and stroke outcomes: A multi-center Canadian study

Authors: Muir, Ryan T., Kapoor, Arunima, Cayley, Megan L., Sicard, Michelle N, Lien, Karen, Southwell, Alisia, Dowlatshahi, Dar, Sahlas, Demetrios J., Saposnik, Gustavo, Mandzia, Jennifer, Casaubon, Leanne K., Hassan, Ayman, Perez, Yael, Selchen, Daniel, Murray, Brian J., Lanctot, Krista, Kapral, Moira K., Herrmann, Nathan, Strother, Stephen, Yu, Amy．Y．X, Austin, Peter C., Bronskill, Susan E., Swartz, Richard H.

Source: In Cerebral Circulation - Cognition and Behavior 2023 4

The development of the pediatric stroke neuroimaging platform (PEDSNIP)

Authors: Domi, Trish, Robertson, Amanda, Lee, Wayne, Wintle, Richard F., Stence, Nicholas, Bernard, Timothy, Kirton, Adam, Carlson, Helen, Andrade, Andrea, Rafay, Mubeen F., Bjornson, Bruce, Kim, Danny, Dowling, Michael, Bonnett, Wilmot, Rivkin, Michael, Krishnan, Pradeep, Shroff, Manohar, Ertl-Wagner, Birgit, Strother, Stephen, Arnott, Steven, Wintermark, Max, Kassner, Andrea, deVeber, Gabrielle, Dlamini, Nomazulu

Source: In NeuroImage: Clinical 2023 39

A hierarchy of cognitive brain networks revealed by multivariate performance metrics

Authors: Strother, Stephen C., Sarraf, Saman, Grady, Cheryl

Source: 2014 48th Asilomar Conference on Signals, Systems and Computers Signals, Systems and Computers, 2014 48th Asilomar Conference on. :603-607 Nov, 2014

Relation: 2014 48th Asilomar Conference on Signals, Systems and Computers

Porting a neuro-imaging application to a CPU-GPU cluster

Authors: Nakhjavani, Reza Sina, Sharify, Sahel, Hashemi, Ali B., Lu, Alan W., Amza, Cristiana, Strother, Stephen

Source: 2014 International Conference on High Performance Computing & Simulation (HPCS) High Performance Computing & Simulation (HPCS), 2014 International Conference on. :137-145 Jul, 2014

Relation: 2014 International Conference on High Performance Computing & Simulation (HPCS)

Predicting Cognitive Impairment in Cerebrovascular Disease Using Spoken Discourse Production

Authors: Roberts, Angela, Aveni, Katharine, Basque, Shalane, Orange, Joseph B., McLaughlin, Paula, Ramirez, Joel, Troyer, Angela K., Gutierrez, Stephanie, Chen, Angie, Bartha, Robert, Binns, Malcolm A., Black, Sandra E., Casaubon, Leanne K., Dowlatshahi, Dar, Hassan, Ayman, Kwan, Donna, Levine, Brian, Mandzia, Jennifer, Sahlas, Demetrios J., Scott, Christopher J. M., Strother, Stephen, Sunderland, Kelly M., Symons, Sean, Swartz, Richard

Source: Topics in Language Disorders. Jan-Mar 2021 41(1):73-98.

Peer Reviewed: Y

Page Count: 26

Sponsoring Agency: National Institute on Deafness and Other Communication Disorders (NIDCD)

Descriptors: Prediction, Discourse Analysis, Language Impairments, Dementia, Risk, Prevention, Speech Communication, Neuropsychology, Diagnostic Tests, Evaluation Criteria, Classification, Evaluation Methods

Cerebello-limbic functional connectivity patterns in youth at clinical high risk for psychosis

Authors: Nogovitsyn, Nikita, Metzak, Paul D., Casseb, Raphael F., Souza, Roberto, Harris, Jacqueline K., Prati, Lionel M., Zamyadi, Mojdeh, Bray, Signe L., Lebel, Catherine, Hassel, Stefanie, Strother, Stephen, Goldstein, Benjamin I., Wang, JianLi, Kennedy, Sidney H., MacQueen, Glenda M., Addington, Jean

Source: In Schizophrenia Research February 2022 240:220-227

Predicting escitalopram treatment response from pre-treatment and early response resting state fMRI in a multi-site sample: A CAN-BIND-1 report

Authors: Harris, Jacqueline K., Hassel, Stefanie, Davis, Andrew D., Zamyadi, Mojdeh, Arnott, Stephen R., Milev, Roumen, Lam, Raymond W., Frey, Benicio N., Hall, Geoffrey B., Müller, Daniel J., Rotzinger, Susan, Kennedy, Sidney H., Strother, Stephen C., MacQueen, Glenda M., Greiner, Russell

Source: In NeuroImage: Clinical 2022 35

Spatiotemporal fMRI data processing using generalized canonical correlation analysis

Authors: Afshin-Pour, Babak, Hossein-Zadeh, Gholam-Ali, Strother, Stephen C., Grady, Chery, Soltanian-Zadeh, Hamid

Source: 2010 17th Iranian Conference of Biomedical Engineering (ICBME) Biomedical Engineering (ICBME), 2010 17th Iranian Conference of. :1-4 Nov, 2010

Relation: 2010 17th Iranian Conference Of Biomedical Engineering (ICBME)

Data-driven evaluation and optimization of acquisition strategies for ultra-high-field functional MRI at 7 Tesla

Authors: Barry, Robert L., Strother, Stephen C., Gatenby, J. Christopher, Gore, John C.

Source: 2010 Biomedical Sciences and Engineering Conference Biomedical Sciences and Engineering Conference (BSEC), 2010. :1-4 May, 2010

Relation: 2010 Biomedical Sciences and Engineering Conference (BSEC)

Structural covariance pattern abnormalities of insula in major depressive disorder: A CAN-BIND study report

Authors: Ge, Ruiyang, Hassel, Stefanie, Arnott, Stephen R., Davis, Andrew D., Harris, Jacqueline K., Zamyadi, Mojdeh, Milev, Roumen, Frey, Benicio N., Strother, Stephen C., Müller, Daniel J., Rotzinger, Susan, MacQueen, Glenda M., Kennedy, Sidney H., Lam, Raymond W., Vila-Rodriguez, Fidel

Source: In Progress in Neuropsychopharmacology & Biological Psychiatry 20 December 2021 111

Hypothalamus volume and DNA methylation of stress axis genes in major depressive disorder: A CAN-BIND study report

Authors: Suh, Jee Su, Fiori, Laura M., Ali, Mohammad, Harkness, Kate L., Ramonas, Milita, Minuzzi, Luciano, Hassel, Stefanie, Strother, Stephen C., Zamyadi, Mojdeh, Arnott, Stephen R., Farzan, Faranak, Foster, Jane A., Lam, Raymond W., MacQueen, Glenda M., Milev, Roumen, Müller, Daniel J., Parikh, Sagar V., Rotzinger, Susan, Sassi, Roberto B., Soares, Claudio N., Uher, Rudolf, Kennedy, Sidney H., Turecki, Gustavo, Frey, Benicio N.

Source: In Psychoneuroendocrinology October 2021 132

Resting state fMRI scanner instabilities revealed by longitudinal phantom scans in a multi-center study

Authors: Kayvanrad, Aras, Arnott, Stephen R., Churchill, Nathan, Hassel, Stefanie, Chemparathy, Aditi, Dong, Fan, Zamyadi, Mojdeh, Gee, Tom, Bartha, Robert, Black, Sandra E., Lawrence-Dewar, Jane M., Scott, Christopher J.M., Symons, Sean, Davis, Andrew D., Hall, Geoffrey B., Harris, Jacqueline, Lobaugh, Nancy J., MacQueen, Glenda, Woo, Cindy, Strother, Stephen

Source: In NeuroImage 15 August 2021 237

MRI-visible perivascular space volumes, sleep duration and daytime dysfunction in adults with cerebrovascular disease

Authors: Strong, Michael, Kleinstiver, Peter, Rashkovan, Natalie, Bronskill, Susan, Black, Sandra E., Borrie, Michael, Finger, Elizabeth, Fischer, Corinne, Frank, Andrew, Freedman, Morris, Kumar, Sanjeev, Pasternak, Stephen, Pollock, Bruce, Rajji, Tarek, Seitz, Dallas, Tang-Wai, David, Tartaglia, Carmela, Varriano, Brenda, Abrahao, Agessandro, Chum, Marvin, Shoesmith, Christen, Turnbull, John, Zinman, Lorne, Lawrence-Dewar, Jane, Kwan, Donna, Tan, Brian, Fraser, Julia, McIlroy, Bill, Cornish, Ben, Van Ooteghem, Karen, Faria, Frederico, Montero-Odasso, Manuel, Sarquis-Adamson, Yanina, Black, Alanna, Greenberg, Barry, Hatch, Wendy, Hudson, Chris, Leontieva, Elena, Margolin, Ed, Mandelcorn, Efrem, Tayyari, Faryan, Defrawy, Sherif, Brien, Don, Chen, Ying, Coe, Brian, Munoz, Doug, Bonnick, Alisia, Casaubon, Leanne, Dowlatshahi, Dar, Hassan, Ayman, Mandzia, Jennifer, Sahlas, Demetrios, Saposnik, Gustavo, Swartz, Richard H., Breen, David, Grimes, David, Jog, Mandar, Lang, Anthony, Marras, Connie, Masellis, Mario, Steeves, Tom, Bulman, Dennis, Dilliott, Allison Ann, Ghani, Mahdi, Hegele, Rob, Robinson, John, Rogaeva, Ekaterina, Farhan, Sali, Bartha, Rob, Haddad, Hassan, Nanayakkara, Nuwan, Ramirez, Joel, Scott, Christopher, Symons, Sean, Berezuk, Courtney, Holmes, Melissa, Adamo, Sabrina, Ozzoude, Miracle, Zamyadi, Mojdeh, Arnott, Stephen, Beaton, Derek, Binns, Malcolm, Lou, Wendy, Raamana, Pradeep, Strother, Stephen, Sunderland, Kelly, Theyers, Athena, Uthirakumaran, Abiramy, Zou, Guangyong (GY), Sujanthan, Sujeevini, Munoz, David, Dixon, Roger A., Woulfe, John, Levine, Brian, McLaughlin, Paula, Orange, J.B., Peltsch, Alicia, Roberts, Angela, Troyer, Angela, Holmes, Melissa F., Scott, Christopher J.M., Gao, Fuqiang, Yu, Di, Swardfager, Walter, Boulos, Mark I., Murray, Brian J., Bartha, Robert, Lim, Andrew

Source: In Sleep Medicine July 2021 83:83-88