Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms

Authors: Nagasaka, Kota, Davidson, Iain F., Stocsits, Roman R., Tang, Wen, Wutz, Gordana, Batty, Paul, Panarotto, Melanie, Litos, Gabriele, Schleiffer, Alexander, Gerlich, Daniel W., Peters, Jan-Michael

Source: In Molecular Cell 7 September 2023 83(17):3049-3063

HiCognition: a visual exploration and hypothesis testing tool for 3D genomics.

Authors: Langer, Christoph C. H., Mitter, Michael, Stocsits, Roman R., Gerlich, Daniel W.

Source: Genome Biology; 7/5/2023, Vol. 24 Issue 1, p1-19, 19p

Airn Transcriptional Overlap, But Not Its lncRNA Products, Induces Imprinted Igf2r Silencing

Authors: Latos, Paulina A., Pauler, Florian M., Koerner, Martha V., Şenergin, H. Başak, Hudson, Quanah J., Stocsits, Roman R., Allhoff, Wolfgang, Stricker, Stefan H., Klement, Ruth M., Warczok, Katarzyna E., Aumayr, Karin, Pasierbek, Pawel, Barlow, Denise P.

Source: Science, 2012 Dec . 338(6113), 1469-1472.

Access URL: http://dx.doi.org/10.1126/science.1228110

H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress

Authors: Sawicka, Anna, Hartl, Dominik, Goiser, Malgorzata, Pusch, Oliver, Stocsits, Roman R., Tamir, Ido M., Mechtler, Karl, Seiser, Christian

Source: Genome research. 24(11):1808-1820

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN603391377&indx=1&recIds=ETOCRN603391377

Cohesin and CTCF do not assemble TADs in Xenopussperm and male pronuclei

Authors: Jessberger, Gregor, Várnai, Csilla, Stocsits, Roman R., Tang, Wen, Stary, Georg, Peters, Jan-Michael

Source: Genome Research; 2023, Vol. 33 Issue: 12 p2094-2107, 14p

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

Authors: Luan Yun-xia, Stocsits Roman R, Letsch Harald O, Simon Sabrina, Gowri-Shankar Vivek, Bartel Daniela, Dell'Ampio Emiliano, Szucsich Nikolaus U, Meusemann Karen, von Reumont Björn M, Wägele Johann, Pass Günther, Hadrys Heike, Misof Bernhard

Source: BMC Evolutionary Biology, Vol 9, Iss 1, p 119 (2009)

Subject Terms: Evolution, QH359-425

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2148/9/119; https://doaj.org/toc/1471-2148

Access URL: https://doaj.org/article/73a130c7c7254074a12ecfad1ccf098c

Multiple sequence alignments of partially coding nucleic acid sequences

Authors: Fried Claudia, Hofacker Ivo L, Stocsits Roman R, Stadler Peter F

Source: BMC Bioinformatics, Vol 6, Iss 1, p 160 (2005)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/6/160; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/d872fbca058a4c78b24ab746192f9729

RNAP as a Moving Barrier to Loop Extrusion

Authors: van den Berg, Aafke A., Wutz, Gordana, Stocsits, Roman R., Brandao, Hugo, Busslinger, Georg, Peters, Jan-Michael, Mirny, Leonid

Source: Biophysical journal. 116(S1):22a-22a

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100076353969.0x000001&indx=1&recIds=ETOCvdc_100076353969.0x000001

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SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs.

Authors: Lelij, Petra¹, Stocsits, Roman R¹, Ladurner, Rene¹, Petzold, Georg¹, Kreidl, Emanuel¹, Koch, Birgit^1,2, Schmitz, Julia¹, Neumann, Beate², Ellenberg, Jan², Peters, Jan‐Michael¹

Source: EMBO Journal. Nov2014, Vol. 33 Issue 22, p2643-2658. 16p. 6 Graphs.

Subject Terms: *SISTER chromatid exchange, *MITOSIS, *RNA splicing, *MESSENGER RNA, *GENE expression, *EUKARYOTES

Airn Transcriptional Overlap, But Not Its IncRNA Products, Induces Imprinted Igf2r Silencing.

Authors: Latos, Paulina A.^1,2, Pauler, Florian M.¹, fpauler@cemm.oeaw.ac.at, Koerner, Martha V.¹, Şenergin, H. Başak^1,3, Hudson, Quanah J.¹, Stocsits, Roman R.⁴, Allhoff, Wolfgang¹, Stricker, Stefan H.^1,5, Klement, Ruth M.¹, Warczok, Katarzyna E.¹, Aumayr, Karin⁴, Pasierbek, Pawel⁶, Barlow, Denise P.¹, dbarlow@cemm.oeaw.ac.at

Source: Science; 12/14/2012, Vol. 338 Issue 6113, p1469-1472, 4p

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships.

Authors: von Reumont, Björn M., Meusemann, Karen, Szucsich, Nikolaus U., Dell'Ampio, Emiliano, Gowri-Shankar, Vivek, Bartel, Daniela, Simon, Sabrina, Letsch, Harald O., Stocsits, Roman R., Yun-xia Luan, Wägele, Johann Wolfgang, Pass, Günther, Hadrys, Heike, Misof, Bernhard

Source: BMC Evolutionary Biology; 2009, Vol. 9, Special section p1-19, 19p, 4 Diagrams

Subject Terms: CASE studies, PHYLOGENY, ARTHROPODA, ANIMAL genetics, BIOLOGY

Multiple sequence alignments of partially coding nucleic acid sequences.

Authors: Stocsits, Roman R., Hofacker, Ivo L., Fried, Claudia, Stadler, Peter F.

Source: BMC Bioinformatics; 2005, Vol. 6, p160-8, 8p, 2 Charts, 6 Graphs

Subject Terms: NUCLEOTIDE sequence, AMINO acid sequence, NUCLEIC acid analysis, GENOMES, RNA, BIOINFORMATICS