Barley2035: A decadal vision for barley research and breeding

Authors: Jiang, Congcong ^{1, 6}, Kan, Jinhong ¹, Gao, Guangqi ¹, Dockter, Christoph ², Li, Chengdao ³, Wu, Wenxue ¹, Yang, Ping ^{1, 6, ∗}, Stein, Nils ^{4, 5, ∗∗}

Source: In Molecular Plant 3 February 2025 18(2):195-218

Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism

Authors: Fusi, Riccardo, Rosignoli, Serena, Lou, Haoyu, Sangiorgi, Giuseppe, Bovina, Riccardo, Pattem, Jacob K., Borkar, Aditi N., Lombardi, Marco, Forestan, Cristian, Milner, Sara G., Davis, Jayne L., Lale, Aneesh, Kirschner, Gwendolyn K., Swarup, Ranjan, Tassinari, Alberto, Pandey, Bipin K., York, Larry M., Atkinson, Brian S., Sturrock, Craig J., Mooney, Sacha J., Hochholdinger, Frank, Tucker, Matthew R., Himmelbach, Axel, Stein, Nils, Mascher, Martin, Nagel, Kerstin A., De Gara, Laura, Simmonds, James, Uauy, Cristobal, Tuberosa, Roberto, Lynch, Jonathan P., Yakubov, Gleb E., Bennett, Malcolm J., Bhosale, Rahul, Salvi, Silvio

Source: Proceedings of the National Academy of Sciences of the United States of America, 2022 Aug 01. 119(31), 1-10.

Access URL: https://www.jstor.org/stable/27172171

Global range expansion history of pepper ( Capsicum spp.) revealed by over 10,000 genebank accessions

Authors: Tripodi, Pasquale, Rabanus-Wallace, Mark Timothy, Barchi, Lorenzo, Kale, Sandip, Esposito, Salvatore, Acquadro, Alberto, Schafleitner, Roland, van Zonneveld, Maarten, Prohens, Jaime, Diez, Maria José, Börner, Andreas, Salinier, Jérémy, Caromel, Bernard, Bovy, Arnaud, Boyaci, Filiz, Pasev, Gancho, Brandt, Ronny, Himmelbach, Axel, Portis, Ezio, Finkers, Richard, Lanteri, Sergio, Paran, Ilan, Lefebvre, Véronique, Giuliano, Giovanni, Stein, Nils

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Aug . 118(34), 1-9.

Access URL: https://www.jstor.org/stable/27075517

A reference-guided TILLING by amplicon-sequencing platform supports forward and reverse genetics in barley

Authors: Jiang, Congcong, Lei, Miaomiao, Guo, Yu, Gao, Guangqi, Shi, Lijie, Jin, Yanlong, Cai, Yu, Himmelbach, Axel, Zhou, Shenghui, He, Qiang, Yao, Xuefeng, Kan, Jinhong, Haberer, Georg, Duan, Fengying, Li, Lihui, Liu, Jun, Zhang, Jing, Spannagl, Manuel, Liu, Chunming, Stein, Nils, Feng, Zongyun, Mascher, Martin, Yang, Ping

Source: In Plant Communications 11 July 2022 3(4)

Insights into breeding history, hotspot regions of selection, and untapped allelic diversity for bread wheat breeding

Authors: Lehnert, Heike, Berner, Thomas, Lang, Daniel, Beier, Sebastian, Stein, Nils, Himmelbach, Axel, Kilian, Benjamin, Keilwagen, Jens

Source: Plant journal. 112(4):897-918

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165495307.0x000001&indx=1&recIds=ETOCvdc_100165495307.0x000001

Barley Ror1 encodes a class XI myosin required for mlo‐based broad‐spectrum resistance to the fungal powdery mildew pathogen

Authors: Acevedo‐Garcia, Johanna, Walden, Kim, Leissing, Franz, Baumgarten, Kira, Drwiega, Katarzyna, Kwaaitaal, Mark, Reinstädler, Anja, Freh, Matthias, Dong, Xue, James, Geo Velikkakam, Baus, Lisa C., Mascher, Martin, Stein, Nils, Schneeberger, Korbinian, Brocke‐Ahmadinejad, Nahal, Kollmar, Martin, Schulze‐Lefert, Paul, Panstruga, Ralph

Source: Plant journal. 112(1):84-103

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165188860.0x000001&indx=1&recIds=ETOCvdc_100165188860.0x000001

Genome sequences of three Aegilops species of the section Sitopsis reveal phylogenetic relationships and provide resources for wheat improvement

Authors: Avni, Raz, Lux, Thomas, Minz‐Dub, Anna, Millet, Eitan, Sela, Hanan, Distelfeld, Assaf, Deek, Jasline, Yu, Guotai, Steuernagel, Burkhard, Pozniak, Curtis, Ens, Jennifer, Gundlach, Heidrun, Mayer, Klaus F. X., Himmelbach, Axel, Stein, Nils, Mascher, Martin, Spannagl, Manuel, Wulff, Brande B. H., Sharon, Amir

Source: Plant journal. 110(1):179-192

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100160369098.0x000001&indx=1&recIds=ETOCvdc_100160369098.0x000001

Prospects of telomere‐to‐telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome

Authors: Navrátilová, Pavla, Toegelová, Helena, Tulpová, Zuzana, Kuo, Yi‐Tzu, Stein, Nils, Doležel, Jaroslav, Houben, Andreas, Šimková, Hana, Mascher, Martin

Source: Plant biotechnology journal. 20(7):1373-1386

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100154072269.0x000001&indx=1&recIds=ETOCvdc_100154072269.0x000001

A catalogue of resistance gene homologs and a chromosome‐scale reference sequence support resistance gene mapping in winter wheat

Authors: Kale, Sandip M., Schulthess, Albert W., Padmarasu, Sudharsan, Boeven, Philipp H. G., Schacht, Johannes, Himmelbach, Axel, Steuernagel, Burkhard, Wulff, Brande B. H., Reif, Jochen C., Stein, Nils, Mascher, Martin

Source: Plant biotechnology journal. 20(9):1730-1742

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100158696880.0x000001&indx=1&recIds=ETOCvdc_100158696880.0x000001

BaRTv2: a highly resolved barley reference transcriptome for accurate transcript‐specific RNA‐seq quantification

Authors: Coulter, Max, Entizne, Juan Carlos, Guo, Wenbin, Bayer, Micha, Wonneberger, Ronja, Milne, Linda, Schreiber, Miriam, Haaning, Allison, Muehlbauer, Gary J., McCallum, Nicola, Fuller, John, Simpson, Craig, Stein, Nils, Brown, John W. S., Waugh, Robbie, Zhang, Runxuan

Source: Plant journal. 111(4):1183-1202

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100158364731.0x000001&indx=1&recIds=ETOCvdc_100158364731.0x000001

Six‐rowed wild‐growing barleys are hybrids of diverse origins

Authors: Guo, Yu, Himmelbach, Axel, Weiss, Ehud, Stein, Nils, Mascher, Martin

Source: Plant journal. 111(3):849-858

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157168791.0x000001&indx=1&recIds=ETOCvdc_100157168791.0x000001

Professor Andreas Graner: driven by the quest to unlock crop plant genomes for conservation and utilization of germplasm for breeding.

Authors: Varshney, Rajeev K.¹ (AUTHOR) rajeev.varshney@murdoch.edu.au, Stein, Nils² (AUTHOR), Reif, Jochen² (AUTHOR)

Source: Plant Biotechnology Journal. Dec2023, Vol. 21 Issue 12, p2426-2432. 7p.

Subject Terms: *GERMPLASM, *PLANT germplasm, *CROPS, *PLANT conservation, *GERMPLASM conservation, *MALTING, *PLANT breeding, *RESTRICTION fragment length polymorphisms

Geographic Terms: GERMANY

Improved genome assembly and pan‐genome provide key insights into eggplant domestication and breeding

Authors: Barchi, Lorenzo, Rabanus‐Wallace, Mark Timothy, Prohens, Jaime, Toppino, Laura, Padmarasu, Sudharsan, Portis, Ezio, Rotino, Giuseppe Leonardo, Stein, Nils, Lanteri, Sergio, Giuliano, Giovanni

Source: Plant journal. 107(2):579-596

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131165824.0x000001&indx=1&recIds=ETOCvdc_100131165824.0x000001

Comparative study of free amino acids at metabolite and gene expression levels in Triticeae during cold acclimation.

Authors: Singh, Kalpita, Gulyás, Zsolt, Athmer, Benedikt, Kovács, Bettina, Mednyánszky, Zsuzsanna, Galiba, Gábor, Stein, Nils, Simon-Sarkadi, Lívia, Kocsy, Gábor

Source: Journal of Plant Biochemistry & Biotechnology; Dec2024, Vol. 33 Issue 4, p558-569, 12p

Leaf Variegation and Impaired Chloroplast Development Caused by a Truncated CCT Domain Gene in albostrians Barley

Authors: Li, Mingjiu, Hensel, Goetz, Mascher, Martin, Melzer, Michael, Budhagatapalli, Nagaveni, Rutten, Twan, Himmelbach, Axel, Beier, Sebastian, Korzun, Viktor, Kumlehn, Jochen, Börner, Thomas, Stein, Nils

Source: The Plant Cell, 2019 Jul 01. 31(7), 1430-1445.

Access URL: https://www.jstor.org/stable/26743185

Leveraging a phased pangenome for haplotype design of hybrid potato

Authors: Cheng, Lin, Wang, Nan, Bao, Zhigui, Zhou, Qian, Guarracino, Andrea, Yang, Yuting, Wang, Pei, Zhang, Zhiyang, Tang, Dié, Zhang, Pingxian, Wu, Yaoyao, Zhou, Yao, Zheng, Yi, Hu, Yong, Lian, Qun, Ma, Zhaoxu, Lassois, Ludivine, Zhang, Chunzhi, Lucas, William J., Garrison, Erik, Stein, Nils, Städler, Thomas, Zhou, Yongfeng, Huang, Sanwen

Source: Nature; 20250101, Issue: Preprints p1-10, 10p

Structural variation in the pangenome of wild and domesticated barley

Authors: Jayakodi, Murukarthick, Lu, Qiongxian, Pidon, Hélène, Rabanus-Wallace, M. Timothy, Bayer, Micha, Lux, Thomas, Guo, Yu, Jaegle, Benjamin, Badea, Ana, Bekele, Wubishet, Brar, Gurcharn S., Braune, Katarzyna, Bunk, Boyke, Chalmers, Kenneth J., Chapman, Brett, Jørgensen, Morten Egevang, Feng, Jia-Wu, Feser, Manuel, Fiebig, Anne, Gundlach, Heidrun, Guo, Wenbin, Haberer, Georg, Hansson, Mats, Himmelbach, Axel, Hoffie, Iris, Hoffie, Robert E., Hu, Haifei, Isobe, Sachiko, König, Patrick, Kale, Sandip M., Kamal, Nadia, Keeble-Gagnère, Gabriel, Keller, Beat, Knauft, Manuela, Koppolu, Ravi, Krattinger, Simon G., Kumlehn, Jochen, Langridge, Peter, Li, Chengdao, Marone, Marina P., Maurer, Andreas, Mayer, Klaus F. X., Melzer, Michael, Muehlbauer, Gary J., Murozuka, Emiko, Padmarasu, Sudharsan, Perovic, Dragan, Pillen, Klaus, Pin, Pierre A., Pozniak, Curtis J., Ramsay, Luke, Pedas, Pai Rosager, Rutten, Twan, Sakuma, Shun, Sato, Kazuhiro, Schüler, Danuta, Schmutzer, Thomas, Scholz, Uwe, Schreiber, Miriam, Shirasawa, Kenta, Simpson, Craig, Skadhauge, Birgitte, Spannagl, Manuel, Steffenson, Brian J., Thomsen, Hanne C., Tibbits, Josquin F., Nielsen, Martin Toft Simmelsgaard, Trautewig, Corinna, Vequaud, Dominique, Voss, Cynthia, Wang, Penghao, Waugh, Robbie, Westcott, Sharon, Rasmussen, Magnus Wohlfahrt, Zhang, Runxuan, Zhang, Xiao-Qi, Wicker, Thomas, Dockter, Christoph, Mascher, Martin, Stein, Nils

Source: Nature; December 2024, Vol. 636 Issue: 8043 p654-662, 9p

Promises and challenges of crop translational genomics

Authors: Mascher, Martin, Jayakodi, Murukarthick, Shim, Hyeonah, Stein, Nils

Source: Nature; December 2024, Vol. 636 Issue: 8043 p585-593, 9p

The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding

Authors: Gao, Liangliang, Koo, Dal-Hoe, Juliana, Philomin, Rife, Trevor, Singh, Daljit, Lemes da Silva, Cristiano, Lux, Thomas, Dorn, Kevin M., Clinesmith, Marshall, Silva, Paula, Wang, Xu, Spannagl, Manuel, Monat, Cecile, Friebe, Bernd, Steuernagel, Burkhard, Muehlbauer, Gary J., Walkowiak, Sean, Pozniak, Curtis, Singh, Ravi, Stein, Nils, Mascher, Martin, Fritz, Allan, Poland, Jesse

Source: Theoretical and applied genetics. 134(2):529-542

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193255052.0x000001&indx=1&recIds=ETOCvdc_100193255052.0x000001

De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes

Authors: Shimizu, Kentaro K, Copetti, Dario, Okada, Moeko, Wicker, Thomas, Tameshige, Toshiaki, Hatakeyama, Masaomi, Shimizu-Inatsugi, Rie, Aquino, Catharine, Nishimura, Kazusa, Kobayashi, Fuminori, Murata, Kazuki, Kuo, Tony, Delorean, Emily, Poland, Jesse, Haberer, Georg, Spannagl, Manuel, Mayer, Klaus F X, Gutierrez-Gonzalez, Juan, Muehlbauer, Gary J, Monat, Cecile, Himmelbach, Axel, Padmarasu, Sudharsan, Mascher, Martin, Walkowiak, Sean, Nakazaki, Tetsuya, Ban, Tomohiro, Kawaura, Kanako, Tsuji, Hiroyuki, Pozniak, Curtis, Stein, Nils, Sese, Jun, Nasuda, Shuhei, Handa, Hirokazu

Source: Plant & cell physiology. 62(1):8-27

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100128214518.0x000001&indx=1&recIds=ETOCvdc_100128214518.0x000001