Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data

Authors: Sri Devan Appasamy, John Berrisford, Romana Gaborova, Sreenath Nair, Stephen Anyango, Sergei Grudinin, Mandar Deshpande, David Armstrong, Ivanna Pidruchna, Joseph I. J. Ellaway, Grisell Díaz Leines, Deepti Gupta, Deborah Harrus, Mihaly Varadi, Sameer Velankar

Source: Scientific Data, Vol 10, Iss 1, Pp 1-13 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2052-4463

Access URL: https://doaj.org/article/d0756c17794b4f30a37d6a65e24cb126

PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank

Authors: Ibrahim Roshan Kunnakkattu, Preeti Choudhary, Lukas Pravda, Nurul Nadzirin, Oliver S. Smart, Qi Yuan, Stephen Anyango, Sreenath Nair, Mihaly Varadi, Sameer Velankar

Source: Journal of Cheminformatics, Vol 15, Iss 1, Pp 1-11 (2023)

Subject Terms: PDB, RDKit, Ligand, Protein structure, Python, CCD, Information technology, T58.5-58.64, Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/1758-2946

Access URL: https://doaj.org/article/7838307f755a49408678c077b01f6d64

Identifying protein conformational states in the Protein Data Bank: Toward unlocking the potential of integrative dynamics studies

Authors: Joseph I. J. Ellaway, Stephen Anyango, Sreenath Nair, Hossam A. Zaki, Nurul Nadzirin, Harold R. Powell, Aleksandras Gutmanas, Mihaly Varadi, Sameer Velankar

Source: Structural Dynamics, Vol 11, Iss 3, Pp 034701-034701-8 (2024)

Subject Terms: Crystallography, QD901-999

File Description: electronic resource

Relation: https://doaj.org/toc/2329-7778

Access URL: https://doaj.org/article/2f98abeaf372423c983a6288a14b7e31

Facilitative lysosomal transport of bile acids alleviates ER stress in mouse hematopoietic precursors

Authors: Avinash K. Persaud, Sreenath Nair, Md Fazlur Rahman, Radhika Raj, Brenna Weadick, Debasis Nayak, Craig McElroy, Muruganandan Shanmugam, Sue Knoblaugh, Xiaolin Cheng, Rajgopal Govindarajan

Source: Nature Communications, Vol 12, Iss 1, Pp 1-18 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/087a41082d3d4e2c8dbfb1af03cf1a8b

Adult stem cell deficits drive Slc29a3 disorders in mice

Authors: Sreenath Nair, Anne M. Strohecker, Avinash K. Persaud, Bhawana Bissa, Shanmugam Muruganandan, Craig McElroy, Rakesh Pathak, Michelle Williams, Radhika Raj, Amal Kaddoumi, Alex Sparreboom, Aaron M. Beedle, Rajgopal Govindarajan

Source: Nature Communications, Vol 10, Iss 1, Pp 1-20 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/808693518ee945b095baa8826e112354

Development and Validation of a Sensitive and Specific LC-MS/MS Method for IWR-1-Endo, a Wnt Signaling Inhibitor: Application to a Cerebral Microdialysis Study

Authors: Sreenath Nair, Abigail Davis, Olivia Campagne, John D. Schuetz, Clinton F. Stewart

Source: Molecules, Vol 27, Iss 17, p 5448 (2022)

Subject Terms: IWR-1-endo, Wnt signaling inhibitor, LC-MS/MS, solid-phase extraction, pharmacokinetics, cerebral microdialysis, Organic chemistry, QD241-441

File Description: electronic resource

Relation: https://www.mdpi.com/1420-3049/27/17/5448; https://doaj.org/toc/1420-3049

Access URL: https://doaj.org/article/0978174873e34ab9ab6f8ef978f8098b

CNS Penetration of Cyclophosphamide and Metabolites in Mice Bearing Group 3 Medulloblastoma and Non-Tumor Bearing Mice

Authors: Olivia Campagne, Abigail Davis, Bo Zhong, Sreenath Nair, Victoria Haberman, Yogesh T. Patel, Laura Janke, Martine F. Roussel, Clinton Stewart

Source: Journal of Pharmacy & Pharmaceutical Sciences, Vol 22, Iss 1 (2019)

Subject Terms: Therapeutics. Pharmacology, RM1-950, Pharmacy and materia medica, RS1-441

File Description: electronic resource

Relation: https://journals.library.ualberta.ca/jpps/index.php/JPPS/article/view/30608; https://doaj.org/toc/1482-1826

Access URL: https://doaj.org/article/8e8830a614c54c6a918f8222913019e8

Investigating the Central Nervous System Disposition of Actinomycin D: Implementation and Evaluation of Cerebral Microdialysis and Brain Tissue Measurements Supported by UPLC-MS/MS Quantification

Authors: Julia Benzel, Gzona Bajraktari-Sylejmani, Philipp Uhl, Abigail Davis, Sreenath Nair, Stefan M. Pfister, Walter E. Haefeli, Johanna Weiss, Jürgen Burhenne, Kristian W. Pajtler, Max Sauter

Source: Pharmaceutics, Vol 13, Iss 9, p 1498 (2021)

Subject Terms: actinomycin D, UPLC-MS/MS, central nervous system, micro-sampling, cerebral microdialysis, Pharmacy and materia medica, RS1-441

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4923/13/9/1498; https://doaj.org/toc/1999-4923

Access URL: https://doaj.org/article/6d2c781dcce146709e38cf0c7f15a912

Mudra: Choreography in Hands

Authors: Sreenath Nair

Source: Body, Space & Technology Journal, Vol 12 (2013)

Subject Terms: mudra, inscription, kinetics, mimesis, embodiment, fingerature, kutiyattam, Natyasastra, optical mechanism, Fine Arts

File Description: electronic resource

Relation: https://www.bstjournal.com/articles/61; https://doaj.org/toc/1470-9120

Access URL: https://doaj.org/article/3fc5505024e14f558e34cdbfdd9b7e88

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