Comprehensive identification of hub mRNAs and lncRNAs in colorectal cancer using galaxy: an in silico transcriptome analysis

Authors: Mohsen Yari, Milad Eidi, Mohammad-Amin Omrani, Zahra Fazeli, Mohammad Rahmanian, Soudeh Ghafouri-Fard

Source: Discover Oncology, Vol 16, Iss 1, Pp 1-16 (2025)

Subject Terms: Genes, MRNA, LncRNA, Biomarker, Colorectal cancer, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6011

Access URL: https://doaj.org/article/3568254391ba48d096688f54edd35d9d

Up-regulation of MAPK14-related lncRNAs in the circulation of migraineurs

Authors: Fatemeh Ensafi Talemi, Bashdar Mahmud Hussen, Fatemeh Keshmir, Abolfazl Movafagh, Parisa Sarabi, Mohammad Rahmanian, Arezou Sayad, Soudeh Ghafouri-Fard

Source: Scientific Reports, Vol 15, Iss 1, Pp 1-8 (2025)

Subject Terms: Migraine, MAPK14, LncRNA, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/7380304a937a45deb0fa5e497ea37c3b

Tissue levels of regulatory T cell related lncRNAs in lung cancer: evidence for dysregulation of immune responses

Authors: Farbod Esfandi, Bashdar Mahmud Hussen, Ali Shakeri Abroudi, Melika Djamali, Solat Eslami, Fatemeh Sadat Feghahati, Arezou Sayad, Soudeh Ghafouri-Fard

Source: Discover Oncology, Vol 16, Iss 1, Pp 1-9 (2025)

Subject Terms: Lung cancer, LncRNA, TH2-LCR, RMRP, IFNG-AS1, MAFTRR, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6011

Access URL: https://doaj.org/article/504acf84fbe442ae893616015ae25509

Expression study of Wnt/β-catenin signaling pathway associated lncRNAs in schizophrenia

Authors: Fatemeh Manafzadeh, Behzad Baradaran, Seyed Gholamreza Noor Azar, Kamran Javidi Aghdam, Reza Dabbaghipour, Asghar Shayannia, Soudeh Ghafouri-Fard

Source: Annals of General Psychiatry, Vol 24, Iss 1, Pp 1-10 (2025)

Subject Terms: Schizophrenia, Antipsychotic drugs, Wnt/β-catenin pathway, Β-catenin, lncRNA, Psychiatry, RC435-571

File Description: electronic resource

Relation: https://doaj.org/toc/1744-859X

Access URL: https://doaj.org/article/b4a39858c2574a5895c44dfd5e82c92a

Bioinformatics analysis of mitochondrial metabolism-related genes demonstrates their importance in renal cell carcinoma

Authors: Mohsen Ahmadi, Maryam Motallebinezhad, Pegah Mousavi, Amir Hossein Miladipour, Shamim Fooladgar, Soudeh Ghafouri-Fard, Seyed Amirhossein Fazeli

Source: Discover Oncology, Vol 16, Iss 1, Pp 1-19 (2025)

Subject Terms: Mitochondrial energy metabolism, Renal cell carcinoma, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6011

Access URL: https://doaj.org/article/b0c00cc3d7e242c6b8d2406bf0305fb3

Performance of cell free DNA as a screening tool based on the results of first trimester screening

Authors: Mahtab Motevasselian, Mohammad Amin Omrani, Soraya Saleh Gargari, Sarang Younesi, Mohammad Mahdi Taheri Amin, Pourandokht Saadati, Soudabeh Jamali, Mohammad-Hossein Modarresi, Shahram Savad, Majid Rahmani, Saloomeh Amidi, Saeed Delshad, Fariba Navidpour, Samira Chagheri, Yalda Mohammadi, Sheyda Khalilian, Solat Eslami, Soudeh Ghafouri-Fard

Source: Molecular Cytogenetics, Vol 17, Iss 1, Pp 1-8 (2024)

Subject Terms: Non-invasive prenatal testing, NIPT, Screening, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1755-8166

Access URL: https://doaj.org/article/9ff6c3df0981408da4e2b0d934c00538

Identification of RN7SK LncRNA as a novel biomarker in Alzheimer’s disease using bioinformatics and expression analysis

Authors: Masoumeh Kazemi, Reza Naghdi Sadeh, Mahmoud Shekari Khaniani, Maryam Rezazadeh, Sima Mansoori Derakhshan, Soudeh Ghafouri-Fard

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-17 (2024)

Subject Terms: Alzheimer’s disease, Bioinformatics, Biomarker, LncRNA, RN7SK, PBMC, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/882f508b9f624adb9ee2fdad78a0d7fd

The role of circRNAs in resistance to doxorubicin

Authors: Mahla Sanati, Soudeh Ghafouri-Fard

Source: Cell Communication and Signaling, Vol 22, Iss 1, Pp 1-20 (2024)

Subject Terms: CircRNA, non-coding RNA, Cancer, Doxorubicin, Medicine, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/1478-811X

Access URL: https://doaj.org/article/ef475227befa48a7af0b77ccb4fe8794

Circular RNAs: novel noncoding players in male infertility

Authors: Emad Babakhanzadeh, Fakhr-Alsadat Hoseininasab, Ali Khodadadian, Majid Nazari, Reza Hajati, Soudeh Ghafouri-Fard

Source: Hereditas, Vol 161, Iss 1, Pp 1-14 (2024)

Subject Terms: Non-coding RNAs, circRNA, Male infertility, Spermatogenesis, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1601-5223

Access URL: https://doaj.org/article/17a9c26fbab4434d8fded77cc232b77e

Importance of LINC00852/miR-145-5p in breast cancer: a bioinformatics and experimental study

Authors: Abbas Shakoori, Asghar Hosseinzadeh, Nahid Nafisi, Ramesh Omranipour, Leyla Sahebi, Nazanin Hosseinkhan, Mohsen Ahmadi, Soudeh Ghafouri-Fard, Maryam Abtin

Source: Discover Oncology, Vol 15, Iss 1, Pp 1-13 (2024)

Subject Terms: LINC00852, miR-145-5p, Breast cancer, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6011

Access URL: https://doaj.org/article/83577bf4c3fa43c387e072ee1d3c4d11

Expression pattern of long non-coding RNAs in treatment-naïve and medicated schizophrenia patients

Authors: Kamran Javidi Aghdam, Behzad Baradaran, Shima Rahmani, Fatemeh Manafzadeh, Seyed Gholamreza Noor Azar, Shahrokh Aghayan, Asghar Shayannia, Soudeh Ghafouri-Fard

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)

Subject Terms: Schizophrenia, IFNG, IL18R, IL18RAP, IFNG-AS1-001, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/0d60b5a361f14fa8b01c77e03a5880dd

Targeting mRNA-coding genes in prostate cancer using CRISPR/Cas9 technology with a special focus on androgen receptor signaling

Authors: Mobina Tabibian, Fahimeh Salasar Moghaddam, Elahe Motevaseli, Soudeh Ghafouri-Fard

Source: Cell Communication and Signaling, Vol 22, Iss 1, Pp 1-20 (2024)

Subject Terms: Prostate cancer, Androgen receptor, CRISPR/Cas9, Medicine, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/1478-811X

Access URL: https://doaj.org/article/86716c71ceaa441d929c4337049dc4a8

A comprehensive outline of the role of non-coding RNAs in vitiligo

Authors: Fateme Sadat Feghahati, Soudeh Ghafouri-Fard

Source: Biochemistry and Biophysics Reports, Vol 41, Iss , Pp 101916- (2025)

Subject Terms: Vitiligo, lncRNA, circRNA, miRNA, Biology (General), QH301-705.5, Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405580825000032; https://doaj.org/toc/2405-5808

Access URL: https://doaj.org/article/890bd513e11f4b898963fc2451c30797

Expression assays of selected lncRNAs in non-functioning pituitary adenomas

Authors: Parisa Esmaeili Motlagh, Soudeh Ghafouri-Fard, Solat Eslami, Guive Sharifi, Mohammad Taheri

Source: Discover Oncology, Vol 15, Iss 1, Pp 1-19 (2024)

Subject Terms: Non-functioning pituitary adenomas, EGFR, EGFR-AS1, FALEC, LINC00240, SNHG12, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2730-6011

Access URL: https://doaj.org/article/d55465a4506244da862606f8eff356df

Corrigendum: The impact of non-coding RNAs in the epithelial to mesenchymal transition

Authors: Bashdar Mahmud Hussen, Hamed Shoorei, Mahdi Mohaqiq, Marcel E. Dinger, Hazha Jamal Hidayat, Mohammad Taheri, Soudeh Ghafouri-Fard

Source: Frontiers in Molecular Biosciences, Vol 11 (2024)

Subject Terms: lncRNA, miRNA, epithelial to mesenchymal transition, expression, biomarker, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2024.1524742/full; https://doaj.org/toc/2296-889X

Access URL: https://doaj.org/article/190fdd48c85340548822bb6d900524f7

Impact of GRM7 gene variations on glioblastoma risk in the Iranian population

Authors: Elena Jamali, Atefeh Harsij, Mohammadamin Yarahmadi, Farahnaz Bidari-Zerehpoush, Yasaman Gholinezhad, Solat Eslami, Hossein Farahzadi, Fariba Agahi, Mohadeseh Fathi, Soudeh Ghafouri-Fard, Mohammad Samadian

Source: Molecular and Cellular Probes, Vol 78, Iss , Pp 101996- (2024)

Subject Terms: GRM7, Glioblastoma, Polymorphism, Biology (General), QH301-705.5, Medicine

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0890850824000483; https://doaj.org/toc/0890-8508

Access URL: https://doaj.org/article/ce478b00b66449a6ad96c4653788a405

Application of CRISPR/Cas9 technology in the modeling of Gaucher disorder

Authors: Mehran Reyhani-Ardabili, Mohadeseh Fathi, Soudeh Ghafouri-Fard

Source: Biochemistry and Biophysics Reports, Vol 40, Iss , Pp 101872- (2024)

Subject Terms: Gaucher disease (GD), GBA1, CRISPR, Biology (General), QH301-705.5, Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S240558082400236X; https://doaj.org/toc/2405-5808

Access URL: https://doaj.org/article/b92f11cb75084d8e833919b789fbbc92

Inhibition of breast cancer cell growth and migration through siRNA-mediated modulation of circ_0009910/miR-145-5p/MUC1 axis

Authors: Maryam Abtin, Nahid Nafisi, Asghar Hosseinzadeh, Sepideh Kadkhoda, Ramesh Omranipour, Leyla Sahebi, Masoumeh Razipour, Soudeh Ghafouri-Fard, Abbas Shakoori

Source: Non-coding RNA Research, Vol 9, Iss 2, Pp 367-375 (2024)

Subject Terms: Breast cancer, Circ_0009910, miR-145-5p, MUC1, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2468054024000167; https://doaj.org/toc/2468-0540

Access URL: https://doaj.org/article/0c8ba7fb37e247c7a34dad53b7e3212f

CRISPR/Cas9 gene editing: a novel strategy for fighting drug resistance in respiratory disorders

Authors: Bashdar Mahmud Hussen, Zana Baqi Najmadden, Snur Rasool Abdullah, Mohammed Fatih Rasul, Suhad A. Mustafa, Soudeh Ghafouri-Fard, Mohammad Taheri

Source: Cell Communication and Signaling, Vol 22, Iss 1, Pp 1-21 (2024)

Subject Terms: Respiratory disease, CRISPR/ Cas9, Drug resistance, Medicine, Cytology, QH573-671

File Description: electronic resource

Relation: https://doaj.org/toc/1478-811X

Access URL: https://doaj.org/article/b22fe0c5d78d4d25b3e1d04e3800d09d

CRISPR/Cas9 technology in the modeling of and treatment of mucopolysaccharidosis

Authors: Mehran Reyhani-Ardabili, Soudeh Ghafouri-Fard

Source: Biochemistry and Biophysics Reports, Vol 39, Iss , Pp 101771- (2024)

Subject Terms: Mucopolysaccharidosis, MPS, CRISPR/Cas9, Biology (General), QH301-705.5, Biochemistry, QD415-436

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2405580824001353; https://doaj.org/toc/2405-5808

Access URL: https://doaj.org/article/e080667c77a34579a3271672b765bcb2