Quantum transport senses community structure in networks

Authors: Zhao, Chenchao, Song, Jun S.

Source: Phys. Rev. E 98, 022301 (2018)

Subject Terms: Quantum Physics, Condensed Matter - Other Condensed Matter, Computer Science - Data Structures and Algorithms, Quantitative Biology - Quantitative Methods, Statistics - Machine Learning

Access URL: http://arxiv.org/abs/1711.04979

Spectral clustering of single-cell multi-omics data on multilayer graphs

Authors: Zhang, Shuyi, Leistico, Jacob R, Cho, Raymond J, Cheng, Jeffrey B, Song, Jun S

Source: Bioinformatics. 38(14):3600-3608

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100155624247.0x000001&indx=1&recIds=ETOCvdc_100155624247.0x000001

Exact heat kernel on a hypersphere and its applications in kernel SVM

Authors: Zhao, Chenchao, Song, Jun S.

Subject Terms: Statistics - Machine Learning, Quantitative Biology - Quantitative Methods, Statistics - Computation

Access URL: http://arxiv.org/abs/1702.01373

Epigenomic tensor predicts disease subtypes and reveals constrained tumor evolution

Authors: Leistico, Jacob R., Saini, Priyanka, Futtner, Christopher R., Hejna, Miroslav, Omura, Yasuhiro, Soni, Pritin N., Sandlesh, Poorva, Milad, Magdy, Wei, Jian-Jun, Bulun, Serdar, Parker, J. Brandon, Barish, Grant D., Song, Jun S., Chakravarti, Debabrata

Source: In Cell Reports 30 March 2021 34(13)

Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation

Authors: Liu, Yale, Cook, Christopher, Sedgewick, Andrew J., Zhang, Shuyi, Fassett, Marlys S., Ricardo-Gonzalez, Roberto R., Harirchian, Paymann, Kashem, Sakeen W., Hanakawa, Sho, Leistico, Jacob R., North, Jeffrey P., Taylor, Mark A., Zhang, Wei, Man, Mao-Qiang, Charruyer, Alexandra, Beliakova-Bethell, Nadejda, Benz, Stephen C., Ghadially, Ruby, Mauro, Theodora M., Kaplan, Daniel H., Kabashima, Kenji, Choi, Jaehyuk, Song, Jun S., Cho, Raymond J., Cheng, Jeffrey B.

Source: In iScience 23 October 2020 23(10)

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution

Authors: Cheng, Jeffrey B., Sedgewick, Andrew J., Finnegan, Alex I., Harirchian, Paymann, Lee, Jerry, Kwon, Sunjong, Fassett, Marlys S., Golovato, Justin, Gray, Matthew, Ghadially, Ruby, Liao, Wilson, Perez White, Bethany E., Mauro, Theodora M., Mully, Thaddeus, Kim, Esther A., Sbitany, Hani, Neuhaus, Isaac M., Grekin, Roy C., Yu, Siegrid S., Gray, Joe W., Purdom, Elizabeth, Paus, Ralf, Vaske, Charles J., Benz, Stephen C., Song, Jun S., Cho, Raymond J.

Source: In Cell Reports 23 October 2018 25(4):871-883

Disruption of the β1L Isoform of GABP Reverses Glioblastoma Replicative Immortality in a TERT Promoter Mutation-Dependent Manner

Authors: Mancini, Andrew, Xavier-Magalhães, Ana, Woods, Wendy S., Nguyen, Kien-Thiet, Amen, Alexandra M., Hayes, Josie L., Fellmann, Christof, Gapinske, Michael, McKinney, Andrew M., Hong, Chibo, Jones, Lindsey E., Walsh, Kyle M., Bell, Robert J.A., Doudna, Jennifer A., Costa, Bruno M., Song, Jun S., Perez-Pinera, Pablo, Costello, Joseph F.

Source: In Cancer Cell 10 September 2018 34(3):513-528

On a Conjecture of Givental

Authors: Song, Jun S., Song, Yun S.

Source: J.Math.Phys. 45 (2004) 4539-4550

Subject Terms: High Energy Physics - Theory, Mathematics - Algebraic Geometry

Access URL: http://arxiv.org/abs/hep-th/0103254

The Hurwitz Enumeration Problem of Branched Covers and Hodge Integrals

Authors: Monni, Stefano, Song, Jun S., Song, Yun S.

Source: J.Geom.Phys. 50 (2004) 223-256

Subject Terms: High Energy Physics - Theory, Mathematics - Algebraic Geometry

Access URL: http://arxiv.org/abs/hep-th/0009129

Local genomic features predict the distinct and overlapping binding patterns of the bHLH‐Zip family oncoproteins MITF and MYC‐MAX

Authors: Hejna, Miroslav, Moon, Wooyoung M., Cheng, Jeffrey, Kawakami, Akinori, Fisher, David E., Song, Jun S.

Source: Pigment cell & melanoma research. 32(4):500-509

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100090983443.0x000001&indx=1&recIds=ETOCvdc_100090983443.0x000001

Descendant Gromov-Witten Invariants, Simple Hurwitz Numbers, and the Virasoro Conjecture for P^1

Authors: Song, Jun S.

Source: Adv.Theor.Math.Phys. 3 (1999) 1721-1768

Subject Terms: High Energy Physics - Theory, Mathematics - Algebraic Geometry

Access URL: http://arxiv.org/abs/hep-th/9912078

Three-Dimensional Gorenstein Singularities and SU(3) Modular Invariants

Authors: Song, Jun S.

Source: Adv.Theor.Math.Phys. 4 (2000) 791-822

Subject Terms: High Energy Physics - Theory

Access URL: http://arxiv.org/abs/hep-th/9908008

Of McKay Correspondence, Non-linear Sigma-model and Conformal Field Theory

Authors: He, Yang-Hui, Song, Jun S.

Source: Adv.Theor.Math.Phys. 4 (2000) 747-790

Subject Terms: High Energy Physics - Theory

Access URL: http://arxiv.org/abs/hep-th/9903056

Intratumoral Heterogeneity of the Epigenome

Authors: Mazor, Tali, Pankov, Aleksandr, Song, Jun S., Costello, Joseph F.

Source: In Cancer Cell 11 April 2016 29(4):440-451

YAP Induces Human Naive Pluripotency

Authors: Qin, Han, Hejna, Miroslav, Liu, Yanxia, Percharde, Michelle, Wossidlo, Mark, Blouin, Laure, Durruthy-Durruthy, Jens, Wong, Priscilla, Qi, Zhongxia, Yu, Jingwei, Qi, Lei S., Sebastiano, Vittorio, Song, Jun S., Ramalho-Santos, Miguel

Source: In Cell Reports 15 March 2016 14(10):2301-2312

Chromatin structure and context-dependent sequence features control prime editing efficiency.

Authors: Kim, Somang, Yuan, Jimmy B., Woods, Wendy S., Newton, Destry A., Perez-Pinera, Pablo, Song, Jun S.

Source: Frontiers in Genetics; 2024, p1-15, 15p

Subject Terms: NUCLEIC acid hybridization, STATISTICAL learning, CHROMATIN, GENOME editing, STATISTICAL mechanics, HETEROCHROMATIN, REVERSE transcriptase

DNA Methylation and Somatic Mutations Converge on the Cell Cycle and Define Similar Evolutionary Histories in Brain Tumors

Authors: Mazor, Tali, Pankov, Aleksandr, Johnson, Brett E., Hong, Chibo, Hamilton, Emily G., Bell, Robert J.A., Smirnov, Ivan V., Reis, Gerald F., Phillips, Joanna J., Barnes, Michael J., Idbaih, Ahmed, Alentorn, Agusti, Kloezeman, Jenneke J., Lamfers, Martine L.M., Bollen, Andrew W., Taylor, Barry S., Molinaro, Annette M., Olshen, Adam B., Chang, Susan M., Song, Jun S., Costello, Joseph F.

Source: In Cancer Cell 14 September 2015 28(3):307-317

The Cancer Genome Atlas Analysis Predicts MicroRNA for Targeting Cancer Growth and Vascularization in Glioblastoma

Authors: Wong, Hon-Kit Andus, Fatimy, Rachid El, Onodera, Courtney, Wei, Zhiyun, Yi, Ming, Mohan, Athul, Gowrisankaran, Sindhuja, Karmali, Priya, Marcusson, Eric, Wakimoto, Hiroaki, Stephens, Robert, Uhlmann, Erik J, Song, Jun S, Tannous, Bakhos, Krichevsky, Anna M

Source: In Molecular Therapy July 2015 23(7):1234-1247

The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer

Authors: Bell, Robert J. A., Rube, H. Tomas, Kreig, Alex, Mancini, Andrew, Fouse, Shaun D., Nagarajan, Raman P., Choi, Serah, Hong, Chibo, He, Daniel, Pekmezci, Melike, Wiencke, John K., Wrensch, Margaret R., Chang, Susan M., Walsh, Kyle M., Myong, Sua, Song, Jun S., Costello, Joseph F.

Source: Science, 2015 May . 348(6238), 1036-1039.

Access URL: https://www.jstor.org/stable/44710309

NF45 and NF90/NF110 coordinately regulate ESC pluripotency and differentiation

Authors: Ye, Julia, Jin, Hu, Pankov, Aleksandr, Song, Jun S., Blelloch, Robert

Source: RNA. 23(8):1270-1284

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN612191072&indx=1&recIds=ETOCRN612191072