Improving the quality of protein structure models by selecting from alignment alternatives

Authors: Sommer Ingolf, Toppo Stefano, Sander Oliver, Lengauer Thomas, Tosatto Silvio CE

Source: BMC Bioinformatics, Vol 7, Iss 1, p 364 (2006)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/7/364; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/a4b83b73bdfe41b8a31a9b550b939872

Local protein structure prediction using discriminative models

Authors: Lengauer Thomas, Sommer Ingolf, Sander Oliver

Source: BMC Bioinformatics, Vol 7, Iss 1, p 14 (2006)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/7/14; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/42016804e00f4967ad75b8d257cee450

NOXclass: prediction of protein-protein interaction types

Authors: Sommer Ingolf, Domingues Francisco S, Zhu Hongbo, Lengauer Thomas

Source: BMC Bioinformatics, Vol 7, Iss 1, p 27 (2006)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/7/27; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/7bf8dbcbb3254c36816924942f43ba32

The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 Å resolution

Authors: Mueller, Florian, Sommer, Ingolf, Baranov, Pavel, Matadeen, Rishi, Stoldt, Matthias, Wöhnert, Jens, Görlach, Matthias, van Heel, Marin, Brimacombe, Richard ^*

Source: In Journal of Molecular Biology 2000 298(1):35-59

Alignment of Non-Covalent Interactions at Protein-Protein Interfaces.

Authors: Hongbo Zhu¹ hzhu@mpi-inf.mpg.de, Sommer, Ingolf¹, Lengauer, Thomas¹, Domingues, Francisco S.¹

Source: PLoS ONE. 2008, Vol. 3 Issue 4, p1-9. 9p. 2 Diagrams, 1 Graph.

Subject Terms: *PROTEIN-protein interactions, *PROTEIN binding, *HYDROGEN bonding, *PEPTIDES, *VAN der Waals forces, *BIOLOGICAL interfaces, *MIMICRY (Chemistry), *MOLECULAR association, *PROTEIN research

Moment invariants as shape recognition technique for comparing protein binding sites.

Authors: Sommer, Ingolf, Müller, Oliver, Domingues, Francisco S.

Source: Bioinformatics; December 1 2007, Vol. 23 Issue 23, p3139-3146, 8p

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STRUCTURAL DESCRIPTORS OF PROTEIN-PROTEIN BINDING SITES.

Authors: SANDER, OLIVER, DOMINGUES, FRANCISCO S., ZHU, HONGBO, LENGAUER, THOMAS, SOMMER, INGOLF

Source: Proceedings of the 6th Asia-Pacific Bioinformatics Conference; 2007, p79-88, 10p

Subject Terms: PROTEIN-protein interactions, PROTEIN binding, BINDING sites, BIOINFORMATICS, SELF-organizing maps

PROFILE-PROFILE ALIGNMENT: A POWERFUL TOOL FOR PROTEIN STRUCTURE PREDICTION.

Authors: VON ÖHSEN, NIKLAS, SOMMER, INGOLF, ZIMMER, RALF

Source: Biocomputing 2003 - Proceedings of the Pacific Symposium; 2002, p252-263, 12p

Subject Terms: PROTEIN structure, COMPUTATIONAL biology, AMINO acid sequence, BIOINFORMATICS, STRUCTURAL proteomics

Chapter 14: Three-Dimensional Organization of the Bacterial Ribosome and Its Subunits: Transition from Low-Resolution Models to High-Resolution Structures.

Authors: BRIMACOMBE, RICHARD, GREUER, BARBARA, MUELLER, FLORIAN, OSSWALD, MONIKA, RINKE-APPEL, JUTTA, SOMMER, INGOLF

Source: Ribosome; 2000, p151-163, 13p

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Confidence measures for protein fold recognition.

Authors: Sommer, Ingolf, Zien, Alexander, von Öhsen, Niklas, Zimmer, Ralf, Lengauer, Thomas

Source: Bioinformatics; Jun2002, Vol. 18 Issue 6, p802-812, 11p

Methods for refining interactively established models of ribosomal RNA towards a physico-chemically plausible structure.

Authors: Sommer, Ingolf, Brimacombe, Richard

Source: Journal of Computational Chemistry; Mar2001, Vol. 22 Issue 4, p407-417, 11p

Historisch wichtige Methoden statt neueste Trends: Bioinformatik. Methoden zur Vorhersage von RNA‐ und Proteinstrukturen. Von Gerhard Steger. Birkhäuser, Basel 2003, 302 Seiten, brosch., 48,‐ Euro ISBN 3‐7643‐6951‐5

Authors: Sommer, Ingolf

Source: Nachrichten aus der Chemie; December 2003, Vol. 51 Issue: 12 p1287-1288, 2p

Arby: automatic protein structure prediction using profile-profile alignment and confidence measures

Authors: von Öhsen, Niklas, Sommer, Ingolf, Zimmer, Ralf, Lengauer, Thomas

Source: Bioinformatics; September 2004, Vol. 20 Issue: 14 p2228-2228, 1p