'A network of mutualities of being': socio-material archaeological networks and biological ties at \c{C}atalh\'oy\'uk

Authors: Mazzucato, Camilla, Coscia, Michele, Doğu, Ayça Küçükakdağ, Haddow, Scott, Kılıç, Muhammed Sıddık, Yüncü, Eren, Somel, Mehmet

Subject Terms: Physics - Physics and Society, Computer Science - Social and Information Networks

Access URL: http://arxiv.org/abs/2406.19149

Single hybrid population but multiple parental individuals at the origin of parthenogenetic rock lizards Darevskia sapphirina and D. bendimahiensis Schmidtler, & Eiselt Darevsky (1994) endemic to the area of Lake Van in East Turkey

Authors: Erdolu, Meriç ^a, Şahin, Mehmet Kürşat ^b, Somel, Mehmet ^a, Yanchukov, Alexey ^{c, ⁎}

Source: In Molecular Phylogenetics and Evolution December 2023 189

Spatial and temporal heterogeneity in human mobility patterns in Holocene Southwest Asia and the East Mediterranean

Authors: Koptekin, Dilek, Yüncü, Eren, Rodríguez-Varela, Ricardo, Altınışık, N. Ezgi, Psonis, Nikolaos, Kashuba, Natalia, Yorulmaz, Sevgi, George, Robert, Kazancı, Duygu Deniz, Kaptan, Damla, Gürün, Kanat, Vural, Kıvılcım Başak, Gemici, Hasan Can, Vassou, Despoina, Daskalaki, Evangelia, Karamurat, Cansu, Lagerholm, Vendela K., Erdal, Ömür Dilek, Kırdök, Emrah, Marangoni, Aurelio, Schachner, Andreas, Üstündağ, Handan, Shengelia, Ramaz, Bitadze, Liana, Elashvili, Mikheil, Stravopodi, Eleni, Özbaşaran, Mihriban, Duru, Güneş, Nafplioti, Argyro, Rose, C. Brian, Gencer, Tuğba, Darbyshire, Gareth, Gavashelishvili, Alexander, Pitskhelauri, Konstantine, Çevik, Özlem, Vuruşkan, Osman, Kyparissi-Apostolika, Nina, Büyükkarakaya, Ali Metin, Oğuzhanoğlu, Umay, Günel, Sevinç, Tabakaki, Eugenia, Aliev, Akper, Ibrahimov, Anar, Shadlinski, Vaqif, Sampson, Adamantios, Kılınç, Gülşah Merve, Atakuman, Çiğdem, Stamatakis, Alexandros, Poulakakis, Nikos, Erdal, Yılmaz Selim, Pavlidis, Pavlos, Storå, Jan, Özer, Füsun, Götherström, Anders, Somel, Mehmet

Source: In Current Biology 9 January 2023 33(1):41-57

“A Network of Mutualities of Being”: Socio-material Archaeological Networks and Biological Ties at Çatalhöyük: “A Network of Mutualities of Being”: Socio-material Archaeological Networks and Biological Ties at Çatalhöyük: C. Mazzuczto et al.

Authors: Mazzucato, Camilla, Coscia, Michele, Küçükakdağ Doğu, Ayça, Haddow, Scott, Kılıç, Muhammed Sıddık, Yüncü, Eren, Somel, Mehmet

Source: Journal of Archaeological Method & Theory; Mar2025, Vol. 32 Issue 1, p1-36, 36p

Pre-processing of paleogenomes: mitigating reference bias and postmortem damage in ancient genome data.

Authors: Koptekin, Dilek, Yapar, Etka, Vural, Kıvılcım Başak, Sağlıcan, Ekin, Altınışık, N. Ezgi, Malaspinas, Anna-Sapfo, Alkan, Can, Somel, Mehmet

Source: Genome Biology; 1/9/2025, Vol. 26 Issue 1, p1-23, 23p

An explanation for the sister repulsion phenomenon in Patterson's f-statistics.

Authors: Atağ, Gözde^1,2, atag.gozde@gmail.com, Waldman, Shamam³, Carmi, Shai⁴, Somel, Mehmet¹, atag.gozde@gmail.com

Source: Genetics; Nov2024, Vol. 228 Issue 3, p1-8, 8p

READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics.

Authors: Alaçamlı, Erkin, Naidoo, Thijessen, Güler, Merve N., Sağlıcan, Ekin, Aktürk, Şevval, Mapelli, Igor, Vural, Kıvılcım Başak, Somel, Mehmet, Malmström, Helena, Günther, Torsten

Source: Genome Biology; 8/12/2024, Vol. 25 Issue 1, p1-20, 20p

Benchmarking kinship estimation tools for ancient genomes using pedigree simulations.

Authors: Aktürk, Şevval, Mapelli, Igor, Güler, Merve N., Gürün, Kanat, Katırcıoğlu, Büşra, Vural, Kıvılcım Başak, Sağlıcan, Ekin, Çetin, Mehmet, Yaka, Reyhan, Sürer, Elif, Atağ, Gözde, Çokoğlu, Sevim Seda, Sevkar, Arda, Altınışık, N. Ezgi, Koptekin, Dilek, Somel, Mehmet

Source: Molecular Ecology Resources; Jul2024, Vol. 24 Issue 5, p1-17, 17p

Subject Terms: KINSHIP, GENOMES, GENE frequency, INBREEDING, GENEALOGY, SINGLE nucleotide polymorphisms

Investigating food production‐associated DNA methylation changes in paleogenomes: Lack of consistent signals beyond technical noise.

Authors: Çokoğlu, Sevim Seda, Koptekin, Dilek, Fidan, Fatma Rabia, Somel, Mehmet

Source: Evolutionary Applications; Jul2024, Vol. 17 Issue 7, p1-11, 11p

Subject Terms: DNA methylation, FOSSIL DNA, SIGNAL-to-noise ratio, NOISE, METHYLATION

Geographic Terms: AFRICA

Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town

Authors: Krzewińska, Maja, Kjellström, Anna, Günther, Torsten, Hedenstierna-Jonson, Charlotte, Zachrisson, Torun, Omrak, Ayça, Yaka, Reyhan, Kılınç, Gülşah Merve, Somel, Mehmet, Sobrado, Veronica, Evans, Jane, Knipper, Corina, Jakobsson, Mattias, Storå, Jan, Götherström, Anders

Source: In Current Biology 10 September 2018 28(17):2730-2738

Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean

Authors: Kilinç, Giilşah Merve, Koptekin, Dilek, Atakuman, Çiğdem, Sümer, Arev Pelin, Dönertaş, Handan Melike, Yaka, Reyhan, Bilgin, Cemal Can, Büyükkarakaya, Ali Metin, Baird, Douglas, Altinişik, Ezgi, Flegontov, Pavel, Götherström, Anders, Togan, inci, Somel, Mehmet

Source: Proceedings: Biological Sciences, 2017 Nov . 284(1867), 1-9.

Access URL: https://www.jstor.org/stable/44684038

Ancient Sheep Genomes Reveal Four Millennia of North European Short-Tailed Sheep in the Baltic Sea Region.

Authors: Larsson, Martin N A¹, Miranda, Pedro Morell¹, Pan, Li¹, Vural, Kıvılcım Başak², Kaptan, Damla², Soares, André Elias Rodrigues¹, Kivikero, Hanna³, Kantanen, Juha⁴, Somel, Mehmet², Özer, Füsun⁵, Johansson, Anna M⁶, Storå, Jan⁷, Günther, Torsten¹, torsten.gunther@ebc.uu.se

Source: Genome Biology & Evolution; Jun2024, Vol. 16 Issue 6, p1-16, 16p

Investigating Holocene human population history in North Asia using ancient mitogenomes

Authors: Kılınç, Gülşah, Kashuba, Natalija, Yaka, Reyhan, Sümer, Arev, Yüncü, Eren, Shergin, Dmitrij, Ivanov, Grigorij, Kichigin, Dmitrii, Pestereva, Kjunnej, Volkov, Denis, Mandryka, Pavel, Kharinskii, Artur, Tishkin, Alexey, Ineshin, Evgenij, Kovychev, Evgeniy, Stepanov, Aleksandr, Alekseev, Aanatolij, Fedoseeva, Svetlana, Somel, Mehmet, Jakobsson, Mattias, Krzewińska, Maja, Storå, Jan, Götherström, Anders

Source: Scientific reports. 8(1):1-10

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171409482.0x000001&indx=1&recIds=ETOCvdc_100171409482.0x000001

Human inbreeding has decreased in time through the Holocene

Authors: Ceballos, Francisco C., Gürün, Kanat, Altınışık, N. Ezgi, Gemici, Hasan Can, Karamurat, Cansu, Koptekin, Dilek, Vural, Kıvılcım Başak, Mapelli, Igor, Sağlıcan, Ekin, Sürer, Elif, Erdal, Yılmaz Selim, Götherström, Anders, Özer, Füsun, Atakuman, Çiğdem, Somel, Mehmet

Source: Current biology. 31(17):3925-3934.e8

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138953157.0x000001&indx=1&recIds=ETOCvdc_100138953157.0x000001

Transcriptomic insights into human brain evolution: acceleration, neutrality, heterochrony

Authors: Somel, Mehmet, Rohlfs, Rori, Liu, Xiling

Source: In Current Opinion in Genetics & Development December 2014 29:110-119

Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears

Authors: Liu, Shiping, Lorenzen, Eline D., Fumagalli, Matteo, Li, Bo, Harris, Kelley, Xiong, Zijun, Zhou, Long, Korneliussen, Thorfinn Sand, Somel, Mehmet, Babbitt, Courtney, Wray, Greg, Li, Jianwen, He, Weiming, Wang, Zhuo, Fu, Wenjing, Xiang, Xueyan, Morgan, Claire C., Doherty, Aoife, O’Connell, Mary J., McInerney, James O., Born, Erik W., Dalén, Love, Dietz, Rune, Orlando, Ludovic, Sonne, Christian, Zhang, Guojie, Nielsen, Rasmus, Willerslev, Eske, Wang, Jun

Source: In Cell 8 May 2014 157(4):785-794

The Demographic Development of the First Farmers in Anatolia

Authors: Kılınç, Gülşah Merve, Omrak, Ayça, Özer, Füsun, Günther, Torsten, Büyükkarakaya, Ali Metin, Bıçakçı, Erhan, Baird, Douglas, Dönertaş, Handan Melike, Ghalichi, Ayshin, Yaka, Reyhan, Koptekin, Dilek, Açan, Sinan Can, Parvizi, Poorya, Krzewińska, Maja, Daskalaki, Evangelia A., Yüncü, Eren, Dağtaş, Nihan Dilşad, Fairbairn, Andrew, Pearson, Jessica, Mustafaoğlu, Gökhan, Erdal, Yılmaz Selim, Çakan, Yasin Gökhan, Togan, İnci, Somel, Mehmet, Storå, Jan, Jakobsson, Mattias, Götherström, Anders

Source: Current biology. 26(19):2659-2666

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100065336284.0x000001&indx=1&recIds=ETOCvdc_100065336284.0x000001

The time and place of origin of South Caucasian languages: insights into past human societies, ecosystems and human population genetics.

Authors: Gavashelishvili, Alexander, Chukhua, Merab, Sakhltkhutsishvili, Kakhi, Koptekin, Dilek, Somel, Mehmet

Source: Scientific Reports; 11/30/2023, Vol. 13 Issue 1, p1-14, 14p

Subject Terms: HUMAN population genetics, COPPER Age, IRON Age, INDO-European languages, ECOSYSTEMS, GENETIC variation, MOBILE genetic elements, PHYLOGENETIC models

Geographic Terms: SOUTH Caucasus, COLCHIS

Temporal changes in the gene expression heterogeneity during brain development and aging

Authors: Işıldak, Ulaş, Somel, Mehmet, Thornton, Janet M., Dönertaş, Handan Melike

Source: Scientific reports. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164290308.0x000001&indx=1&recIds=ETOCvdc_100164290308.0x000001

Effects of coumaphos on locomotor activities of different honeybee (Apis mellifera L.) subspecies and ecotypes.

Authors: Arslan, Okan Can, Erdem, Babür, Somel, Mehmet, GIRAY, Tugrul, Kence, Meral

Source: Apidologie; Aug2023, Vol. 54 Issue 4, p1-18, 18p