Prevalence of mutations associated with artemisinin partial resistance and sulfadoxine–pyrimethamine resistance in 13 regions in Tanzania in 2021: a cross-sectional survey

Authors: Juliano, Jonathan J, Giesbrecht, David J, Simkin, Alfred, Fola, Abebe A, Lyimo, Beatus M, Pereus, Dativa, Bakari, Catherine, Madebe, Rashid A, Seth, Misago D, Mandara, Celine I, Popkin-Hall, Zachary R, Moshi, Ramadhan, Mbwambo, Ruth B, Niaré, Karamoko, MacInnis, Bronwyn, Francis, Filbert, Mbwambo, Daniel, Garimo, Issa, Chacky, Frank, Aaron, Sijenunu, Lusasi, Abdallah, Molteni, Fabrizio, Njau, Ritha J A, Nhiga, Samwel L, Mohamed, Ally, Bailey, Jeffrey A, Ishengoma, Deus S

Source: In The Lancet Microbe October 2024 5(10)

Capsid transfer of the retrotransposon Copia controls structural synaptic plasticity in Drosophila.

Authors: M'Angale, P. Githure¹, Lemieux, Adrienne¹, Liu, Yumeng², Wang, Shuhao¹, Zinter, Max¹, Alegre, Gimena¹, Simkin, Alfred¹, Budnik, Vivian¹, Kelch, Brian A.², brian.kelch@umassmed.edu, Thomson, Travis¹, Travis.Thomson@umassmed.edu

Source: PLoS Biology; 2/18/2025, Vol. 23 Issue 2, p1-27, 27p

Application of a new highly multiplexed amplicon sequencing tool to evaluate Plasmodium falciparum antimalarial resistance and relatedness in individual and pooled samples from Dschang, Cameroon.

Authors: Sadler, Jacob M.¹, Simkin, Alfred², Tchuenkam, Valery P. K.³, Gerdes Gyuricza, Isabela^1,4, Fola, Abebe A.², Wamae, Kevin⁵, Assefa, Ashenafi^1,6, Niaré, Karamoko², Thwai, Kyaw¹, White, Samuel J.¹, Moss, William J.⁷, Dinglasan, Rhoel R.⁸, Nsango, Sandrine Eveline⁹, Tume, Christopher B.³, Parr, Jonathan B.^1,4,10, Ali, Innocent Mbulli³, Bailey, Jeffrey A.^2,11, Juliano, Jonathan J.^1,4,10,12 jjuliano@med.unc.edu

Source: Frontiers in Parasitology. 2025, p1-16. 16p.

Subject Terms: *PLASMODIUM falciparum, *ANTIMALARIALS, *POLYMERASE chain reaction, *MALARIA, *DRUG resistance

Population genomics of Plasmodium ovale species in sub-Saharan Africa.

Authors: Carey-Ewend, Kelly, Popkin-Hall, Zachary R., Simkin, Alfred, Muller, Meredith, Hennelly, Chris, He, Wenqiao, Moser, Kara A., Gaither, Claudia, Niaré, Karamoko, Aghakanian, Farhang, Feleke, Sindew, Brhane, Bokretsion G., Phanzu, Fernandine, Kashamuka, Melchior Mwandagalirwa, Aydemir, Ozkan, Sutherland, Colin J., Ishengoma, Deus S., Ali, Innocent M., Ngasala, Billy, Kalonji, Albert

Source: Nature Communications; 11/27/2024, Vol. 15 Issue 1, p1-13, 13p

Subject Terms: WHOLE genome sequencing, TETRAHYDROFOLATE dehydrogenase, GENOMICS, MALARIA prevention, PLASMODIUM

High-throughput genotyping of Plasmodium vivax in the Peruvian Amazon via molecular inversion probes.

Authors: Popkin-Hall, Zachary R., Niaré, Karamoko, Crudale, Rebecca, Simkin, Alfred, Fola, Abebe A., Sanchez, Juan F., Pannebaker, Danielle L., Giesbrecht, David J., Kim Jr., Isaac E., Aydemir, Özkan, Bailey, Jeffrey A., Valdivia, Hugo O., Juliano, Jonathan J.

Source: Nature Communications; 11/25/2024, Vol. 15 Issue 1, p1-11, 11p

Subject Terms: MOLECULAR probes, PLASMODIUM vivax, PLASMODIUM falciparum, MOLECULAR epidemiology, DNA vaccines

A widespread sequence-specific mRNA decay pathway mediated by hnRNPs A1 and A2/B1

Authors: Geissler, Rene, Simkin, Alfred, Floss, Doreen, Patel, Ravi, Fogarty, Elizabeth A., Scheller, Jürgen, Grimson, Andrew

Source: Genes & development. 30(9):1070-1085

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN606329877&indx=1&recIds=ETOCRN606329877

RECURRENT AND RECENT SELECTIVE SWEEPS IN THE piRNA PATHWAY

Authors: Simkin, Alfred, Wong, Alex, Poh, Yu-Ping, Theurkauf, William E., Jensen, Jeffrey D.

Source: Evolution, 2013 Apr 01. 67(4), 1081-1090.

Access URL: http://dx.doi.org/10.1111/evo.12011

Evolutionary Dynamics of microRNA target sites across vertebrate evolution.

Authors: Simkin, Alfred^1,2 (AUTHOR), Geissler, Rene¹ (AUTHOR), McIntyre, Alexa B. R.^1,3 (AUTHOR), Grimson, Andrew¹ (AUTHOR) asimkin@elon.edu

Source: PLoS Genetics. 2/3/2020, Vol. 16 Issue 2, p1-33. 33p.

Subject Terms: *MICRORNA, *REGULATOR genes, *GENETIC regulation, *BINDING sites

MicroRNA-9

Authors: Yuva-Aydemir, Yeliz, Simkin, Alfred, Gascon, Eduardo, Gao, Fen-Biao

Source: RNA biology. 8(4):557-564

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100053906471.0x000001&indx=1&recIds=ETOCvdc_100053906471.0x000001

A genome-wide comparative study identifies novel cis-regulatory elements co-regulated by hnRNPs A1 and A2/B1
Eurkaryotic mRNA processing (Meeting)

Authors: Geissler, Rene, Simkin, Alfred, Fogarty, Elizabeth A., Grimson, Andrew W.

Source: Abstracts of papers presented at the ... meeting on eukaryotic mRNA processing. 2015:72-72

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN603354497&indx=1&recIds=ETOCCN603354497

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