iBrick: a new standard for iterative assembly of biological parts with homing endonucleases.

Authors: Jia-Kun Liu, Wei-Hua Chen, Shuang-Xi Ren, Guo-Ping Zhao, Jin Wang

Source: PLoS ONE, Vol 9, Iss 10, p e110852 (2014)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4203835?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/d4bdb5c9ec9c45f788428fa84da5e435

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors: Tadashi Imanishi, Takeshi Itoh, Yutaka Suzuki, Claire O'Donovan, Satoshi Fukuchi, Kanako O Koyanagi, Roberto A Barrero, Takuro Tamura, Yumi Yamaguchi-Kabata, Motohiko Tanino, Kei Yura, Satoru Miyazaki, Kazuho Ikeo, Keiichi Homma, Arek Kasprzyk, Tetsuo Nishikawa, Mika Hirakawa, Jean Thierry-Mieg, Danielle Thierry-Mieg, Jennifer Ashurst, Libin Jia, Mitsuteru Nakao, Michael A Thomas, Nicola Mulder, Youla Karavidopoulou, Lihua Jin, Sangsoo Kim, Tomohiro Yasuda, Boris Lenhard, Eric Eveno, Yoshiyuki Suzuki, Chisato Yamasaki, Jun-ichi Takeda, Craig Gough, Phillip Hilton, Yasuyuki Fujii, Hiroaki Sakai, Susumu Tanaka, Clara Amid, Matthew Bellgard, Maria de Fatima Bonaldo, Hidemasa Bono, Susan K Bromberg, Anthony J Brookes, Elspeth Bruford, Piero Carninci, Claude Chelala, Christine Couillault, Sandro J de Souza, Marie-Anne Debily, Marie-Dominique Devignes, Inna Dubchak, Toshinori Endo, Anne Estreicher, Eduardo Eyras, Kaoru Fukami-Kobayashi, Gopal R Gopinath, Esther Graudens, Yoonsoo Hahn, Michael Han, Ze-Guang Han, Kousuke Hanada, Hideki Hanaoka, Erimi Harada, Katsuyuki Hashimoto, Ursula Hinz, Momoki Hirai, Teruyoshi Hishiki, Ian Hopkinson, Sandrine Imbeaud, Hidetoshi Inoko, Alexander Kanapin, Yayoi Kaneko, Takeya Kasukawa, Janet Kelso, Paul Kersey, Reiko Kikuno, Kouichi Kimura, Bernhard Korn, Vladimir Kuryshev, Izabela Makalowska, Takashi Makino, Shuhei Mano, Regine Mariage-Samson, Jun Mashima, Hideo Matsuda, Hans-Werner Mewes, Shinsei Minoshima, Keiichi Nagai, Hideki Nagasaki, Naoki Nagata, Rajni Nigam, Osamu Ogasawara, Osamu Ohara, Masafumi Ohtsubo, Norihiro Okada, Toshihisa Okido, Satoshi Oota, Motonori Ota, Toshio Ota, Tetsuji Otsuki, Dominique Piatier-Tonneau, Annemarie Poustka, Shuang-Xi Ren, Naruya Saitou, Katsunaga Sakai, Shigetaka Sakamoto, Ryuichi Sakate, Ingo Schupp, Florence Servant, Stephen Sherry, Rie Shiba, Nobuyoshi Shimizu, Mary Shimoyama, Andrew J Simpson, Bento Soares, Charles Steward, Makiko Suwa, Mami Suzuki, Aiko Takahashi, Gen Tamiya, Hiroshi Tanaka, Todd Taylor, Joseph D Terwilliger, Per Unneberg, Vamsi Veeramachaneni, Shinya Watanabe, Laurens Wilming, Norikazu Yasuda, Hyang-Sook Yoo, Marvin Stodolsky, Wojciech Makalowski, Mitiko Go, Kenta Nakai, Toshihisa Takagi, Minoru Kanehisa, Yoshiyuki Sakaki, John Quackenbush, Yasushi Okazaki, Yoshihide Hayashizaki, Winston Hide, Ranajit Chakraborty, Ken Nishikawa, Hideaki Sugawara, Yoshio Tateno, Zhu Chen, Michio Oishi, Peter Tonellato, Rolf Apweiler, Kousaku Okubo, Lukas Wagner, Stefan Wiemann, Robert L Strausberg, Takao Isogai, Charles Auffray, Nobuo Nomura, Takashi Gojobori, Sumio Sugano

Source: PLoS Biology, Vol 2, Iss 6, p e162 (2004)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1544-9173; https://doaj.org/toc/1545-7885

Access URL: https://doaj.org/article/06eb24ad78484cfc8526622555aa94d3

A preliminary study of the mechanism of nitrate-stimulated remarkable increase of rifamycin production in Amycolatopsis mediterranei U32 by RNA-seq.

Authors: Zhi Hui Shao¹, Shuang Xi Ren¹, Xin Qiang Liu¹, Jian Xu², Han Yan¹, Guo Ping Zhao^1,3,4,5, Jin Wang¹ jinwang@sibs.ac.cn

Source: Microbial Cell Factories. 2015, Vol. 14 Issue 1, p1-11. 11p. 2 Color Photographs, 4 Charts, 1 Graph.

Subject Terms: *RIFAMYCINS, *AMYCOLATOPSIS mediterranei, *RNA sequencing, *NITRATES, *GENE expression, *BIOSYNTHESIS

Synthesis, Antifungal Activities and Qualitative Structure Activity Relationship of Carabrone Hydrazone Derivatives as Potential Antifungal Agents.

Authors: Hao Wang¹ k2wanghao@gmail.com, Shuang-Xi Ren¹ rensx123@gmail.com, Ze-Yu He¹ skyhugh2012@gmail.com, De-Long Wang¹ moraldragonwang@gmail.com, Xiao-Nan Yan¹ orgshylock@gmail.com, Jun-Tao Feng¹ fengjt67@hotmail.com, Xing Zhang¹ zhxing1952@126.com

Source: International Journal of Molecular Sciences. Mar2014, Vol. 15 Issue 3, p4257-S14. 30p. 3 Diagrams.

Subject Terms: *HYDRAZONE derivatives, *ANTIFUNGAL agents, *AGRICULTURAL productivity, *COLLETOTRICHUM lagenarium, *BOTRYTIS cinerea, *PHYTOPATHOGENIC fungi

Synthesis and Antifungal Activities of Carabrol Ester Derivatives.

Authors: Jun-Tao Feng, Hao Wang, Shuang-Xi Ren, Jun He, Yong Liu, Xing Zhang

Source: Journal of Agricultural & Food Chemistry; 4/18/2012, Vol. 60 Issue 15, p3817-3823, 7p

Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).

Authors: Yue-Qing Zhang¹, Shuang-Xi Ren², Hua-Lin Li¹, Yong-Xiang Wang¹, Gang Fu², Jian Yang³, Zhi-Qiang Qin¹, You-Gang Miao⁴, Wen-Yi Wang¹, Run-Sheng Chen³, Yan Shen², Zhu Chen², Zheng-Hong Yuan¹, Guo-Ping Zhao^2,4, Di Qu¹, Danchin, Antoine⁵, Yu-Mel Wen¹ ymwen@shmu.edu.cn

Source: Molecular Microbiology. Sep2003, Vol. 49 Issue 6, p1577. 17p.

Subject Terms: *STAPHYLOCOCCUS, *MICROBIAL virulence, *GENOMES

Variant-type PML-RARα fusion transcript in acute promyelocytic leukemia: Use of a cryptic coding sequence from intron 2 of the RARα gene and identification of a new clinical subtype resistant to retinoic acid therapy.

Authors: Bai-Wei Gu, Hui Xiong, Yan Zhou, Bing Chen, Li Wang, Shuo Dong, Zhi-Yuan Yu, Ling-Feng Lu, Ming Zhong, Hai-Feng Yin, Gen-Feng Zhu, Wei Huang, Shuang-Xi Ren, Gallagher, Robert E., Waxman, Samuel, Guo-Qiang Chen, Zhu-Gang Wang, Zhu Chen

Source: Proceedings of the National Academy of Sciences of the United States of America; 5/28/2002, Vol. 99 Issue 11, p7640, 6p, 8 Diagrams, 1 Chart, 2 Graphs

Subject Terms: TRETINOIN, INTRONS

Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris.

Authors: Wei Qian¹, Yantao Jia¹, Shuang-xi Ren^2,3, Yong-qiang He⁴, Jia-xun Feng⁴, Ling-feng Lu², Qihong Sun¹, Ge Ying¹, Dong-jie Ta⁴, Hua Tang⁵, Wei Wu¹, Pel Hao^6,7, Lifeng Wang¹, Bo-le Jiang⁴, Shenyan Zeng¹, Wen-yi Gu², Gang Lu², Li Rong⁸, Yingchuan Tian¹, Zhijian Yao⁸

Source: Genome Research. Jun2005, Vol. 15 Issue 6, p757-767. 11p.

Subject Terms: *XANTHOMONAS campestris, *XANTHOMONAS, *CRUCIFER black rot, *CRUCIFERAE diseases & pests, *TRANSPOSONS, *MOBILE genetic elements, *GENOMICS, *MOLECULAR genetics